Re: [OMPI users] Open MPI exited on signal 11 (Segmentation fault). Trying to run a script that uses Open MPI

2013-07-05 Thread Ralph Castain
Well, it's telling you that your program segfaulted - so I'd start with that, 
perhaps looking for any core it might have dropped.

On Jul 4, 2013, at 8:36 PM, Rick White  wrote:

> Hello, 
> 
> I have this error:
> mpiexec noticed that process rank 1 with PID 16087 on node server exited on 
> signal 11 (Segmentation fault)
> 
> Wondering how to fix it?
> 
> Cheers and many thanks
> Rick
> 
> -- 
> Richard Allen White III M.S.
> PhD Candidate - Suttle Lab
> Department of Microbiology & Immunology
> The University of British Columbia 
> Vancouver, BC, Canada
> cell.  604-440-5150 
> http://www.ocgy.ubc.ca/~suttle/ 
> 
> 
> ___
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users



Re: [OMPI users] Open MPI exited on signal 11 (Segmentation fault). Trying to run a script that uses Open MPI

2013-07-05 Thread Ed Blosch
Compile with -traceback and -check all if using Intel.   Otherwise find the 
right compiler options to check array bounds accesses and to dump a stack 
trace. Then compile debug and run that way. Assuming it fails, you probably 
will get good info on the source of the problem. If it doesn't fail then the 
compiler has a bug (not as rare as you might think).

You need to look at the application output. Not the output from mpirun.

Ed


Sent via the Samsung Galaxy S™ III, an AT&T 4G LTE smartphone

 Original message 
From: Ralph Castain  
Date:  
To: Open MPI Users  
Subject: Re: [OMPI users] Open MPI exited on signal 11 (Segmentation fault).    
Trying to run a script that uses Open MPI 
 
Well, it's telling you that your program segfaulted - so I'd start with that, 
perhaps looking for any core it might have dropped.

On Jul 4, 2013, at 8:36 PM, Rick White  wrote:

Hello, 

I have this error:
mpiexec noticed that process rank 1 with PID 16087 on node server exited on 
signal 11 (Segmentation fault)

Wondering how to fix it?

Cheers and many thanks
Rick

-- 
Richard Allen White III M.S.
PhD Candidate - Suttle Lab
Department of Microbiology & Immunology
The University of British Columbia 
Vancouver, BC, Canada
cell.  604-440-5150 
http://www.ocgy.ubc.ca/~suttle/ 


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