Re: [OMPI users] error with Vprotocol pessimist

2008-01-30 Thread Thomas Ropars

Jeff Squyres wrote:

On Jan 30, 2008, at 4:43 AM, Thomas Ropars wrote:

  
After running autogen.sh, the file opal/libltdl/loaders/dlopen.c  
doesn't
exist and more generally the directory opal/libltdl/loaders/ doesn't  
exist.
That's why I need to add the RTLD_GLOBAL flag after running  
autogen.sh.


I'm using the following version of the autotools.

autoconf (GNU Autoconf) 2.61
automake (GNU automake) 1.10
libtoolize (GNU libtool) 1.5.22



  

Sorry, I made a mistake ... I works fine for me too with LT 1.5.22

It seems that the problem is with LT 1.5.24
With this version, I only have in my sys_dl_open():
lt_module   module   = dlopen (filename, LT_LAZY_OR_NOW);
If you're running LT 1.5, that makes sense -- the loaders/ directory  
is new in the LT 2.x series, IIRC.  However, 1.5.22 should *default*  
to RTLD_GLOBAL; the switch to RTLD_LOCAL was a change in the LT 2.x  
series.


Indeed, when I used 1.5.22, I see the following in my sys_dl_open():

   lt_module   module   = dlopen (filename, LT_GLOBAL | LT_LAZY_OR_NOW);

And LT_GLOBAL is a #define for RTLD_GLOBAL.

Are you seeing something different?
  
What OS are you using?
  

Linux


  

Thomas
Jeff Squyres wrote:


We are testing for a specific line when looking for this patch:

test ! -z "`grep 'filename, LT_LAZY_OR_NOW' opal/libltdl/
loaders/dlopen.c`"; then

If this line is different in your dlopen.c, then it doesn't find it
and therefore autogen.sh doesn't patch it.

Did you already patch dlopen.c, perchance, or is your original
dlopen.c different than this?


On Jan 29, 2008, at 9:35 AM, Thomas Ropars wrote:


  
I've solved the problem by adding the flag RTLD_GLOBAL in the call  
to

dlopen() in function "sys_dl_open (loader_data, filename)"
(opal/libltdl/ltdl.c)

It seems that I need this flag. However when I run autogen.sh, I get
the
following:
** Adjusting libltdl for OMPI :-(
++ patching for argz bugfix in libtool 1.5
   -- your libtool doesn't need this! yay!
++ patching 64-bit OS X bug in ltmain.sh
   -- your libtool doesn't need this! yay!
++ RTLD_GLOBAL in libltdl
   -- your libltdl doesn't need this! yay!

Thomas

Thomas Ropars wrote:



Hi,

I have the same error message when fault tolerance is activated.
I'm using gcc version 4.1.3, with Ubuntu 7.10 (i686) (kernel
2.6.22-14-generic)

Thomas

Aurelien Bouteiller wrote:


  

If you want to use the pessimist message logging you have to use
the "-
mca vprotocol pessimist" flag on your command line. This should  
work

despite the bug because if I understand correctly, the issue you
experience should occur only when fault tolerance is disabled.
I have troubles to reproduce the particular bug you are
experiencing.
What compiler and what architecture are you using ?

Aurelien
Le 13 déc. 07 à 07:58, Thomas Ropars a écrit :






I still have the same error after update (r16951).

I have the lib/openmpi/mca_pml_v.so file in my builld and the
command
line I use is: mpirun -np 4 my_application

Thomas


Aurelien Bouteiller wrote:



  

I could reproduce and fix the bug. It will be corrected in trunk
as
soon as the svn is online again. Thanks for reporting the  
problem.


Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :






I cannot reproduce the error. Please make sure you have the  
lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe  
you

forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your  
command

line
options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :





  

Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :







Hi,

I've tried to test the message logging component vprotocol
pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol  
pessimist:

/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so:
undefined
symbol:
pml_v_output (ignored)


Regards

Thomas
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--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996





  


Re: [OMPI users] error with Vprotocol pessimist

2008-01-30 Thread Thomas Ropars
After running autogen.sh, the file opal/libltdl/loaders/dlopen.c doesn't 
exist and more generally the directory opal/libltdl/loaders/ doesn't exist.

That's why I need to add the RTLD_GLOBAL flag after running autogen.sh.

I'm using the following version of the autotools.

autoconf (GNU Autoconf) 2.61
automake (GNU automake) 1.10
libtoolize (GNU libtool) 1.5.22


Thomas
Jeff Squyres wrote:

We are testing for a specific line when looking for this patch:

 test ! -z "`grep 'filename, LT_LAZY_OR_NOW' opal/libltdl/ 
loaders/dlopen.c`"; then


If this line is different in your dlopen.c, then it doesn't find it  
and therefore autogen.sh doesn't patch it.


Did you already patch dlopen.c, perchance, or is your original  
dlopen.c different than this?



On Jan 29, 2008, at 9:35 AM, Thomas Ropars wrote:

  

I've solved the problem by adding the flag RTLD_GLOBAL in the call to
dlopen() in function "sys_dl_open (loader_data, filename)"
(opal/libltdl/ltdl.c)

It seems that I need this flag. However when I run autogen.sh, I get  
the

following:
** Adjusting libltdl for OMPI :-(
 ++ patching for argz bugfix in libtool 1.5
-- your libtool doesn't need this! yay!
 ++ patching 64-bit OS X bug in ltmain.sh
-- your libtool doesn't need this! yay!
 ++ RTLD_GLOBAL in libltdl
-- your libltdl doesn't need this! yay!

Thomas

Thomas Ropars wrote:


Hi,

I have the same error message when fault tolerance is activated.
I'm using gcc version 4.1.3, with Ubuntu 7.10 (i686) (kernel
2.6.22-14-generic)

Thomas

Aurelien Bouteiller wrote:

  
If you want to use the pessimist message logging you have to use  
the "-

mca vprotocol pessimist" flag on your command line. This should work
despite the bug because if I understand correctly, the issue you
experience should occur only when fault tolerance is disabled.
I have troubles to reproduce the particular bug you are  
experiencing.

What compiler and what architecture are you using ?

Aurelien
Le 13 déc. 07 à 07:58, Thomas Ropars a écrit :





I still have the same error after update (r16951).

I have the lib/openmpi/mca_pml_v.so file in my builld and the  
command

line I use is: mpirun -np 4 my_application

Thomas


Aurelien Bouteiller wrote:


  
I could reproduce and fix the bug. It will be corrected in trunk  
as

soon as the svn is online again. Thanks for reporting the problem.

Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :






I cannot reproduce the error. Please make sure you have the lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe you
forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your command
line
options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :




  

Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :






Hi,

I've tried to test the message logging component vprotocol
pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so:  
undefined

symbol:
pml_v_output (ignored)


Regards

Thomas
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--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


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Re: [OMPI users] error with Vprotocol pessimist

2008-01-29 Thread Jeff Squyres

We are testing for a specific line when looking for this patch:

test ! -z "`grep 'filename, LT_LAZY_OR_NOW' opal/libltdl/ 
loaders/dlopen.c`"; then


If this line is different in your dlopen.c, then it doesn't find it  
and therefore autogen.sh doesn't patch it.


Did you already patch dlopen.c, perchance, or is your original  
dlopen.c different than this?



On Jan 29, 2008, at 9:35 AM, Thomas Ropars wrote:


I've solved the problem by adding the flag RTLD_GLOBAL in the call to
dlopen() in function "sys_dl_open (loader_data, filename)"
(opal/libltdl/ltdl.c)

It seems that I need this flag. However when I run autogen.sh, I get  
the

following:
** Adjusting libltdl for OMPI :-(
 ++ patching for argz bugfix in libtool 1.5
-- your libtool doesn't need this! yay!
 ++ patching 64-bit OS X bug in ltmain.sh
-- your libtool doesn't need this! yay!
 ++ RTLD_GLOBAL in libltdl
-- your libltdl doesn't need this! yay!

Thomas

Thomas Ropars wrote:

Hi,

I have the same error message when fault tolerance is activated.
I'm using gcc version 4.1.3, with Ubuntu 7.10 (i686) (kernel
2.6.22-14-generic)

Thomas

Aurelien Bouteiller wrote:

If you want to use the pessimist message logging you have to use  
the "-

mca vprotocol pessimist" flag on your command line. This should work
despite the bug because if I understand correctly, the issue you
experience should occur only when fault tolerance is disabled.
I have troubles to reproduce the particular bug you are  
experiencing.

What compiler and what architecture are you using ?

Aurelien
Le 13 déc. 07 à 07:58, Thomas Ropars a écrit :




I still have the same error after update (r16951).

I have the lib/openmpi/mca_pml_v.so file in my builld and the  
command

line I use is: mpirun -np 4 my_application

Thomas


Aurelien Bouteiller wrote:


I could reproduce and fix the bug. It will be corrected in trunk  
as

soon as the svn is online again. Thanks for reporting the problem.

Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :





I cannot reproduce the error. Please make sure you have the lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe you
forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your command
line
options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :





Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :





Hi,

I've tried to test the message logging component vprotocol
pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so:  
undefined

symbol:
pml_v_output (ignored)


Regards

Thomas
___
users mailing list
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--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


___
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http://www.open-mpi.org/mailman/listinfo.cgi/users




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Cisco Systems




Re: [OMPI users] error with Vprotocol pessimist

2008-01-29 Thread Thomas Ropars
I've solved the problem by adding the flag RTLD_GLOBAL in the call to 
dlopen() in function "sys_dl_open (loader_data, filename)" 
(opal/libltdl/ltdl.c)


It seems that I need this flag. However when I run autogen.sh, I get the 
following:

** Adjusting libltdl for OMPI :-(
 ++ patching for argz bugfix in libtool 1.5
-- your libtool doesn't need this! yay!
 ++ patching 64-bit OS X bug in ltmain.sh
-- your libtool doesn't need this! yay!
 ++ RTLD_GLOBAL in libltdl
-- your libltdl doesn't need this! yay!

Thomas

Thomas Ropars wrote:

Hi,

I have the same error message when fault tolerance is activated.
I'm using gcc version 4.1.3, with Ubuntu 7.10 (i686) (kernel 
2.6.22-14-generic)


Thomas

Aurelien Bouteiller wrote:
  
If you want to use the pessimist message logging you have to use the "- 
mca vprotocol pessimist" flag on your command line. This should work  
despite the bug because if I understand correctly, the issue you  
experience should occur only when fault tolerance is disabled.
I have troubles to reproduce the particular bug you are experiencing.  
What compiler and what architecture are you using ?


Aurelien
Le 13 déc. 07 à 07:58, Thomas Ropars a écrit :

  


I still have the same error after update (r16951).

I have the lib/openmpi/mca_pml_v.so file in my builld and the command
line I use is: mpirun -np 4 my_application

Thomas


Aurelien Bouteiller wrote:

  

I could reproduce and fix the bug. It will be corrected in trunk as
soon as the svn is online again. Thanks for reporting the problem.

Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :


  


I cannot reproduce the error. Please make sure you have the lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe you
forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your command  
line

options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :



  

Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :


  


Hi,

I've tried to test the message logging component vprotocol
pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so: undefined
symbol:
pml_v_output (ignored)


Regards

Thomas
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--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


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Re: [OMPI users] error with Vprotocol pessimist

2007-12-19 Thread Thomas Ropars

Hi,

I have the same error message when fault tolerance is activated.
I'm using gcc version 4.1.3, with Ubuntu 7.10 (i686) (kernel 
2.6.22-14-generic)


Thomas

Aurelien Bouteiller wrote:
If you want to use the pessimist message logging you have to use the "- 
mca vprotocol pessimist" flag on your command line. This should work  
despite the bug because if I understand correctly, the issue you  
experience should occur only when fault tolerance is disabled.
I have troubles to reproduce the particular bug you are experiencing.  
What compiler and what architecture are you using ?


Aurelien
Le 13 déc. 07 à 07:58, Thomas Ropars a écrit :

  

I still have the same error after update (r16951).

I have the lib/openmpi/mca_pml_v.so file in my builld and the command
line I use is: mpirun -np 4 my_application

Thomas


Aurelien Bouteiller wrote:


I could reproduce and fix the bug. It will be corrected in trunk as
soon as the svn is online again. Thanks for reporting the problem.

Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :


  

I cannot reproduce the error. Please make sure you have the lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe you
forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your command  
line

options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :




Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :


  

Hi,

I've tried to test the message logging component vprotocol
pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so: undefined
symbol:
pml_v_output (ignored)


Regards

Thomas
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--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


___
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Re: [OMPI users] error with Vprotocol pessimist

2007-12-13 Thread Aurelien Bouteiller
If you want to use the pessimist message logging you have to use the "- 
mca vprotocol pessimist" flag on your command line. This should work  
despite the bug because if I understand correctly, the issue you  
experience should occur only when fault tolerance is disabled.
I have troubles to reproduce the particular bug you are experiencing.  
What compiler and what architecture are you using ?


Aurelien
Le 13 déc. 07 à 07:58, Thomas Ropars a écrit :


I still have the same error after update (r16951).

I have the lib/openmpi/mca_pml_v.so file in my builld and the command
line I use is: mpirun -np 4 my_application

Thomas


Aurelien Bouteiller wrote:

I could reproduce and fix the bug. It will be corrected in trunk as
soon as the svn is online again. Thanks for reporting the problem.

Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :



I cannot reproduce the error. Please make sure you have the lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe you
forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your command  
line

options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :



Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :



Hi,

I've tried to test the message logging component vprotocol
pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so: undefined
symbol:
pml_v_output (ignored)


Regards

Thomas
___
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--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


___
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Re: [OMPI users] error with Vprotocol pessimist

2007-12-13 Thread Thomas Ropars

I still have the same error after update (r16951).

I have the lib/openmpi/mca_pml_v.so file in my builld and the command 
line I use is: mpirun -np 4 my_application


Thomas


Aurelien Bouteiller wrote:
I could reproduce and fix the bug. It will be corrected in trunk as  
soon as the svn is online again. Thanks for reporting the problem.


Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :

  

I cannot reproduce the error. Please make sure you have the lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe you
forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your command line
options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :



Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :

  

Hi,

I've tried to test the message logging component vprotocol  
pessimist.

(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so: undefined
symbol:
pml_v_output (ignored)


Regards

Thomas
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--
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Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


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Re: [OMPI users] error with Vprotocol pessimist

2007-12-12 Thread Aurelien Bouteiller
I could reproduce and fix the bug. It will be corrected in trunk as  
soon as the svn is online again. Thanks for reporting the problem.


Aurelien

Le 11 déc. 07 à 15:02, Aurelien Bouteiller a écrit :


I cannot reproduce the error. Please make sure you have the lib/
openmpi/mca_pml_v.so file in your build. If you don't, maybe you
forgot to run autogen.sh at the root of the trunk when you
removed .ompi_ignore.

If this does not fix the problem, please let me know your command line
options to mpirun.

Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :


Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :


Hi,

I've tried to test the message logging component vprotocol  
pessimist.

(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so: undefined
symbol:
pml_v_output (ignored)


Regards

Thomas
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--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


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Re: [OMPI users] error with Vprotocol pessimist

2007-12-11 Thread Aurelien Bouteiller
I cannot reproduce the error. Please make sure you have the lib/ 
openmpi/mca_pml_v.so file in your build. If you don't, maybe you  
forgot to run autogen.sh at the root of the trunk when you  
removed .ompi_ignore.


If this does not fix the problem, please let me know your command line  
options to mpirun.


Aurelien

Le 11 déc. 07 à 14:36, Aurelien Bouteiller a écrit :


Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :


Hi,

I've tried to test the message logging component vprotocol pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so: undefined
symbol:
pml_v_output (ignored)


Regards

Thomas
___
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users




--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996


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users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users





Re: [OMPI users] error with Vprotocol pessimist

2007-12-11 Thread Aurelien Bouteiller

Mmm, I'll investigate this today.

Aurelien
Le 11 déc. 07 à 08:46, Thomas Ropars a écrit :


Hi,

I've tried to test the message logging component vprotocol pessimist.
(svn checkout revision 16926)
When I run an mpi application, I get the following error :

mca: base: component_find: unable to open vprotocol pessimist:
/local/openmpi/lib/openmpi/mca_vprotocol_pessimist.so: undefined  
symbol:

pml_v_output (ignored)


Regards

Thomas
___
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users




--
Dr. Aurelien Bouteiller, Sr. Research Associate
Innovative Computing Laboratory - MPI group
+1 865 974 6321
1122 Volunteer Boulevard
Claxton Education Building Suite 350
Knoxville, TN 37996