[Pw_forum] The equal k-points cannot lead to the same energy band.

2016-05-28 Thread lyzhao
Dear all,
I ran a band structure calculation at some high symmetry k-points for a 
hexagonal structure (SiC 111).
I try the following two sets of k-points:
S1. 
K_POINTS
 3
 0.000 0.000  0.000 1.0
 0.333 0.333  0.000 1.0
 0.500 0.000  0.000 1.0
S2. 
K_POINTS 
 3
 0.0   0.0   0.0 1
-0.333  0.667  0.000 1
 0.000  0.500  0.000 1

S1 leads to the following energy band:
  k = 0. 0. 0. (  1139 PWs)   bands (ev):
   -17.6202  -7.0494  -4.2017  -4.2017  -0.4467   1.5150   1.6453   2.3677
  k = 0.3330 0.3330 0. (  1095 PWs)   bands (ev):
   -15.2584 -10.1839  -6.6316  -4.3186   0.2328   1.6659   3.8224   4.8909
  k = 0.5000 0. 0. (  1096 PWs)   bands (ev):
   -15.1008 -10.7511  -5.7976  -4.1069  -0.3499   0.3805   4.1445   5.3833
 highest occupied, lowest unoccupied level (ev):-4.1069   -0.4467
however, S2 leads to:
  k = 0. 0. 0. (  1139 PWs)   bands (ev):
   -17.7480  -7.1365  -4.3482  -4.3482  -0.5055   1.5128   1.6485   2.3416
  k =-0.3330 0.6670 0. (  1092 PWs)   bands (ev):
   -15.8503  -9.8006  -5.8672  -4.9789   0.6816   0.8106   3.0639   4.2245
  k = 0. 0.5000 0. (  1102 PWs)   bands (ev):
   -15.1554 -10.1200  -7.9378  -4.0954   0.0949   3.2276   4.3675   4.3703
 highest occupied, lowest unoccupied level (ev):-4.0954   -0.5055
 
The differences between two results seem to be large.
The differences between two jobs are only the setting of k-points. 
The input file is as follow:
*
&control
 calculation='scf'
 restart_mode='from_scratch',
 prefix='SiC111'
/
&system
ibrav=0,nat=2,ntyp=2
ecutwfc = 15.0, occupations='fixed'
nbnd=8
/
&electrons
 diagonalization='david',
 conv_thr =  1.0d-10,
 mixing_beta = 0.5,
 startingwfc='random',
/
ATOMIC_SPECIES
Si  28.06 Si.pbe-mt_gipaw.UPF 
C   12.01 C.pbe-mt_gipaw.UPF
K_POINTS
 3
 0.000 0.000  0.000 1.0
 0.333 0.333  0.000 1.0
 0.500 0.000  0.000 1.0

CELL_PARAMETERS (angstrom)
 2.6844596  -1.5498735   0.000   
 0.000   3.0997470   0.000   
 0.000   0.000  20.0077731   
ATOMIC_POSITIONS (crystal)
 C 0.00   0.00   0.50  
 Si0.33  -0.33   0.50  
*


Any help will be appreciated.

Youzhao Lan
Zhejiang Normal University, 
China.











2016-05-29  12:42:52___
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Re: [Pw_forum] Band gap value through charged supercell calculation

2016-05-28 Thread Mostafa Youssef
Dear Evan,


I would consult literature for that matter.  It is very difficult and 
counterproductive to discuss this in an online forum.


Mostafa
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[Pw_forum] STM images after CP calculations

2016-05-28 Thread Eduardo Cisternas
Dear QE community:

After suceesfull Car-Parrinello calculations in QE v5.1.1 for thiols/Au111
surface I wanted to obtain STM images for this system.

The last input was

+

&control

title = 'd2tiofeno_b0',

calculation = 'cp',

disk_io = 'high',

wf_collect = .TRUE.,

pseudo_dir = '/home/ecisternas/pseudos'

restart_mode = 'restart',

ndr = 64,

ndw = 65,

nstep  = 10,
...
+

and was completed satisfactorily in a cluster.

However, when I try to obtain a .cube file (to generate
STM images) using the input file:

+
&inputpp
prefix = 'd2tiofeno_b_65'
filplot = 'd2tiobSTM'
outdir = '/home/ecisternas/2015/d2tiofeno_b/'
plot_num = 6,
sample_bias=-0.3735d0,
 /
&plot
nfile = 1,
filepp(1) = 'd2tiobSTMtest',
iflag = 3,
output_format = 6,
e1(1) = 0.1, e1(2) = 0.0, e1(3) = 0.0,
e2(1) = 0.0, e2(2) = 0.1, e2(3) = 0.0,
e3(1) = 0.0, e3(2) = 0.0, e3(3) = 1.0,
x0(1) = 0.5, x0(2) = 0.5, x0(3) = 0.0,
/nx = 40, ny = 40,
nx = 4, ny=4, nz=4,
fileout='d2tiobSTM_test.cube'

+

I don´t obtain the .cube file, despite the job ends without errors.

I will thank enormously any help with this issue.

Best regards,

-- 

*Dr. Eduardo Cisternas Jara*
Physics Department
Universidad de La Frontera

*Temuco - CHILE*
F: +56 - 45 - 232 52 46

-- 
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Si usted no es el destinatario de esta comunicación, le informamos que 
cualquier divulgación, distribución o copia de esta información constituye 
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[Pw_forum] Plot Wannier density with cp.x

2016-05-28 Thread Meli Rocco
Dear All,
I am trying to compute Wannier functions. Unfortunately I didn’t managed to 
make wannier90 work (the code does not converges after 1000 iterations), 
therefore I switched to cp.x. I performed a SCF calculation at first (to obtain 
a converged KS ground state), then a CP-WF calculation with the option CALWF=4 
(in order to obtain the converged Wannier ground state). I managed to obtain 
Wannier centers (in the .wfc file) and they are as expected. Wannier spreads 
are in fort.24 and look quite good too. Now I would like to plot the density 
for some selected Wannier function. I tried to use CALWF=1 with NWF=4 (and with 
the default vale WFFORT=40) but no density seems to be printed (it should be in 
unit 40). I tried a restart from the SCF as well as a new calculation with CPWF 
without success.

I included my input file below. What am I doing wrong? How can I obtain the 
density of selected Wannier functions obtained with cp.x (possibly in a format 
that VMD or XCrysDen understand, preferably a Cube file)?

I am using QE version 5.0.2 but I can easily access other versions too. My 
input for the first CP-WF calculation is the following:

&CONTROL
calculation='cp-wf',
restart_mode='restart',
title='0_q1_cpwf',
prefix='0_q1',
wf_collect=.TRUE.,
outdir='tmp',
tstress=.false.,
tprnfor=.true.,
saverho=.true.,
pseudo_dir='/home/meli/pseudo',
ndr=50,
ndw=51,
nstep=1000,
iprint=1,
dt = 1.0d0,
ekin_conv_thr = 1.0d-8,
etot_conv_thr = 1.0d-6,
forc_conv_thr = 1.0d-2,
/

&SYSTEM
ibrav=8,
celldm(1)=20.463430107,
celldm(2)=0.8660254037844387,
celldm(3)=0.9249151312417805,
nat=96,
ntyp=4,
ecutwfc=70,
tot_charge=1
/

&ELECTRONS
emass=400.D0,
emass_cutoff=3.D0,
orthogonalization='Gram-Schmidt',
tcg=.true.,
passop=0.3,
maxiter=250,
conv_thr=1.d-8,
/

&IONS
ion_dynamics = "none",
/

&WANNIER
wfsd = 3
calwf = 4
nit = 100
nsd = 100
nsteps = 200
tolw = 1.0D-14
/

ATOMIC_SPECIES
Al 26.9815 Al.cpi.UPF
N 14.007 N.pbe-mt_fhi.UPF
O 15.999 O_felix_ABINIT.pp
In 114.818 In_nonlcc.cpi.UPF

ATOMIC_POSITIONS (alat)
Al   0.833367149  -0.577350409  -0.926582146
Al   0.64210  -0.577350502  -0.926581467
Al   0.583366741  -0.433013000  -0.926581747
Al   0.833367149  -0.288674591  -0.926582146
Al   0.083365312  -0.433013000  -0.926581934
Al   0.64210  -0.288674498  -0.926581467
Al   0.583366510  -0.144337444  -0.926581888
Al   0.833366806  -0.866025000  -0.926582159
Al   0.083365025  -0.144337605  -0.926582015
Al   0.64124  -0.866025000  -0.926581404
Al   0.583366510  -0.721688556  -0.926581888
Al   0.083365025  -0.721688395  -0.926582015
Al   0.833366364  -0.577350254  -0.464125299
In   0.65119  -0.577350322  -0.464125789
In   0.583365982  -0.433013000  -0.464125973
Al   0.833366364  -0.288674746  -0.464125299
Al   0.083365679  -0.433013000  -0.464125270
In   0.65119  -0.288674678  -0.464125789
Al   0.583365864  -0.144337642  -0.464125646
Al   0.833366118  -0.866025000  -0.464125069
Al   0.083365630  -0.144337679  -0.464125137
Al   0.65184  -0.866025000  -0.464125516
Al   0.583365864  -0.721688358  -0.464125646
Al   0.083365630  -0.721688321  -0.464125137
Al   0.666546702  -0.577350328  -0.695353067
Al   0.166545322  -0.577350192  -0.695353291
In   0.416545452  -0.433013000  -0.695353391
Al   0.666546702  -0.288674672  -0.695353067
Al   0.916546325  -0.433013000  -0.695353300
Al   0.166545322  -0.288674808  -0.695353291
Al   0.416545614  -0.144337684  -0.695353219
Al   0.666546786  -0.866025000  -0.695353008
Al   0.916546407  -0.144337690  -0.695353185
Al   0.166545399  -0.866025000  -0.695353166
Al   0.416545614  -0.721688316  -0.695353219
Al   0.916546407  -0.721688310  -0.695353185
Al   0.666546992  -0.577350445  -0.232896826
Al   0.166544901  -0.577350296  -0.232896548
Al   0.416545373  -0.433013000  -0.232897391
Al   0.666546992  -0.288674555  -0.232896826
Al   0.916546260  -0.433013000  -0.232896408
Al   0.166544901  -0.288674704  -0.232896548
Al   0.416545560  -0.144337509  -0.232897164
Al   0.666547035  -0.866025000  -0.232896541
Al   0.916546260  -0.144337563  -0.232896247
Al   0.166545143  -0.866025000  -0.232896498
Al   0.416545560  -0.721688491  -0.232897164
Al   0.916546260  -0.721688437  -0.232896247
N0.833487081  -0.577350219  -0.287369821
N0.333484396  -0.577350420  -0.287370796
N0.583487176  -0.433013000  -0.287370611
N0.833487081  -0.288674781  -0.287369821
N0.083485316  -0.433013000  -0.287369844
N0.333484396  -0.288674580  -0.287370796
N0.583486959  -0.144337508  -0.287370261
N0.833486701  -0.866025000  -0.287369576
N0.083485178  -0.144337794  -0.287369852
N0.333484695  -0.866025000  -0.287370426
N0.583486959  -0.721688492  -0.287370261
N0.083485178  -0.721688206  -0.287369852
N0.833486732  -0.5773501

[Pw_forum] ecut and K point convergence of suppercell

2016-05-28 Thread deepakrai
Dear all,

I have checked the ecut and K point convergence of my primitive cell,
Using this primitive cell I have made a supper cell. My supper cell
contain  50 atoms and now I want to doped foreign atom in my supper cell.
I have also obtained the relax coordinate of doped supper cell.

MY QUESTION IS :-  Every time when I doped a foreign atom to my supper
cell, I have to check  ecut and K point convergence or not ?

I am asking this question because convergence checking for supper cell
containing 50 atom take very long time.


Regards
--
Deepak Kumar Rai
IIT BOMBAY
PHYSICS DEPARTMENT
INDIA

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