Re: [QE-users] How to describe the covalent interactions

2018-11-26 Thread Premkumar Thirumalaisamy
Hi
Charge density and ELF is most preferable to describe the bonding nature
and electron sharing between the atoms. From the PDOS, if the electronic
states of the atoms are energetically as well as spatially degenerate,
there might be possibility of covalent interactions between those atoms.
Bond strength of the specific bond is calculated using Crystal Orbital
Hamiltonian Population (COHP) plots, which is also useful to describe the
type of bonding in between two atoms (if it is large bond strength the
interaction must be covalent).

On Sat, Nov 24, 2018 at 5:34 PM Gui Wei <201707021...@cqu.edu.cn> wrote:

> Hi
> What analytical methods can be used to qualitatively or quantitatively
> describe the covalent interactions between atoms in different
> functionalized graphene/metal substrate heterostructures?Integrate the
> hybrid peak of PDOS?The width of pseudogap of TDOS? Bader charge population
> analysis?ELF?bond order?
>
>
> Wei gui
> School of Mechanical Engineering,Chongqing University, China
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Regards,
Premkumar T.
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Re: [QE-users] phonons with vdW functional

2018-11-26 Thread Aleksandra Oranskaia
I will be very thankful for any thoughts on this issue.
Also if you know QE experts please kindly redirect the message.


> On Nov 26, 2018, at 6:05 PM, Aleksandra Oranskaia 
>  wrote:
> 
> Hello dear users and developers of QE,
> 
> I am trying to calculate phonons using very good structure (tightly 
> optimized, matching the experimental one, etc), but whatever I do the result 
> is:
> 
>  
> %%
>  Error in routine cdiaghg (448):
>  S matrix not positive definite
>  
> %%
> 
> I varied:
> - number of processors (with too large # of processors similar issues are 
> reported)
> - ecutrho increasing it up to ecutwfc*15
> - different smearings schemes (the system is a narrow band gap semiconductor)
> - different diagonalization procedures (from my personal experience: david 
> fail sometimes where cg saves the day)
> - used nosym=.true.
> 
> I would highly appreciate any thoughts on the nature of this mistake 
> happening in the very beginning of phonon calculation.
> 
> 
> Best,
> Alex.
> ___
> Aleksandra Oranskaia (M.Sc.)
> ChemS PhD student, KAUST
> Phone: +966 50 1335254
> 
> 
> 
> 
> 
> 


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[QE-users] phonons with vdW functional

2018-11-26 Thread Aleksandra Oranskaia
Hello dear users and developers of QE,

I am trying to calculate phonons using very good structure (tightly optimized, 
matching the experimental one, etc), but whatever I do the result is:

 %%
 Error in routine cdiaghg (448):
 S matrix not positive definite
 %%

I varied:
- number of processors (with too large # of processors similar issues are 
reported)
- ecutrho increasing it up to ecutwfc*15
- different smearings schemes (the system is a narrow band gap semiconductor)
- different diagonalization procedures (from my personal experience: david fail 
sometimes where cg saves the day)
- used nosym=.true.

I would highly appreciate any thoughts on the nature of this mistake happening 
in the very beginning of phonon calculation.


Best,
Alex.
___
Aleksandra Oranskaia (M.Sc.)
ChemS PhD student, KAUST
Phone: +966 50 1335254







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Re: [QE-users] Relax with electric field cannot converge

2018-11-26 Thread Christoph Wolf
I think there is a typo

lelfield = .TURE. ,

for your convergence issue: run a calc without electric field first, then
restart by reading the charge density from file(startingpot='file') with
field turn on at a small value (you can play that game several times and
increase the value gradually)!

HTH,
Chris



-- 
Postdoctoral Researcher
Center for Quantum Nanoscience, Institute for Basic Science
Ewha Womans University, Seoul, South Korea
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Re: [QE-users] Keep the symmetry during a calculation

2018-11-26 Thread Lorenzo Paulatto
But I'm not sure *PW/tools/cell2ibrav.f90* 
I tried to recompile with and without adding *PW/tools/cell2ibrav.f90* 


Hello,
do not include that file at all, it's an external tool that's not used 
here. Just apply the two-line patch to move_ions.f90


cheers

--
Lorenzo Paulatto - Paris
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