[QE-users] Inquiry Regarding the atomic displacement in Phonon Calculation

2024-03-28 Thread zhouchao via users
Dear QE Community,

I hope this message finds you well. First and foremost, I want to express my 
gratitude for the assistance and guidance you have provided in the QE 
community, which has been immensely beneficial to me.

I have a long-standing question that I hope you can help me with. In phonon 
calculations, we obtain vibration frequencies and eigenvectors from the 
matdyn.out file. I am particularly interested in understanding how to interpret 
the vibration modes. For example, 

  
freq (1) =  -0.01 [THz] =  -0.20 [cm-1]  (  0.010966   
0.00-0.007875   0.00 0.408025   0.00   )  (  0.010966   
0.00-0.007875   0.00 0.408025   0.00   )  (  0.010966   
0.00-0.007875   0.00 0.408025   0.00   )  (  0.010966   
0.00-0.007875   0.00 0.408025   0.00   )  (  0.010966   
0.00-0.007875   0.00 0.408025   0.00   )  (  0.010966   
0.00-0.007875   0.00 0.408025   0.00   )




(0.010966, -0.007876, 0) represents the vibration displacement of the first 
atom or the normalized coordinates? Are the units in atomic units? For 
orthogonal cells, can these numbers be directly converted to atomic 
displacements, but how to convert for non-orthogonal cells? How should the 
imaginary part be understood? Thank you very much for your help.

zhouchao___
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[QE-users] Difference between data file saved inside outdir

2024-03-28 Thread Abdul Muhaymin via users

Hello all,

After a spin-polarized scf calculation, I have several files such as 
wfcup#.hdf5, wfcdw#hdf5 etc inĀ in outdir/prefix.save. The number of the 
files are equal to the 2*number of k points. However, after nscf 
calculation, I am getting more data files in the outdir (not in 
outdir/prefix.save). I have N number of prefix.wfc* files where N is the 
number of processor I used. What is the difference between these two 
type of files? Are they both wavefunction? If I delete them, will there 
be any problem?


Sincerely,
Abdul Muhaymin,
Graduate student,
Bilkent University, Ankara.
___
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people and expresses its concerns about the devastating
effects that the Russian military offensive has on their
country and on the free and peaceful scientific, cultural,
and economic cooperation amongst peoples
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