Re: [QE-users] unable to open the output file of vc relax inxcrysden while performing calculation for slab

2018-10-13 Thread Priyanka Makkar
Hi Hari,
Thanks for the reply. As suggested by  you, I have checked the lattice
parameters and atomic positions in output of vc-relax and both are present.
I am sending you the input file. kindly help me out in resolving the issue.




 
   title = 'MnF-slab' ,
 calculation = 'vc-relax' ,
restart_mode = 'from_scratch' ,
  outdir = '/home/p20170414/MnF-slab/' ,
  wfcdir = '/home/p20170414/MnF-slab/' ,
  pseudo_dir =
'/opt/apps/quantum_espresso/qe-6.1/pseudo/pslibrary.1.0.0/pbe/PSEUDOPOTENTIALS/'
,
  prefix = 'pwscf' ,
   verbosity = 'high' ,
 /
 
   ibrav = 0,
   celldm(1) = 11.3557527319d0,
 nat = 28,
ntyp = 3,
 ecutwfc = 40 ,
 ecutrho = 480 ,
   input_dft = 'pbe' ,
 occupations = 'smearing' ,
 degauss = 0.005d0 ,
smearing = 'methfessel-paxton' ,
   nspin = 2 ,
   starting_magnetization(1) = 0.5,
  lda_plus_u = .true. ,
 lda_plus_u_kind = 0 ,
Hubbard_U(1) = 1.769,
Hubbard_U(2) = 6.531,
vdw_corr = 'grimme-d2' ,
 /
 
   scf_must_converge = .false. ,
conv_thr = 1d-06 ,
 mixing_mode = 'local-TF' ,
 mixing_beta = 0.7d0 ,
 /
 
ion_dynamics = 'bfgs' ,
 /
 
   cell_dynamics = 'bfgs' ,
 /
CELL_PARAMETERS alat
 1.00.00.0
-0.50.8660254040.0
 0.00.03.297106646
ATOMIC_SPECIES
   Fe   55.84500  Fe.pbe-n-rrkjus_psl.1.0.0.UPF
   Mn   54.93800  Mn.pbe-spn-rrkjus_psl.1.0.0.UPF
O   15.99940  O.pbe-n-rrkjus_psl.1.0.0.UPF
ATOMIC_POSITIONS crystal
   Fe  0.00.00.030955041
O  0.3632881490.1816440750.064691840
O  0.8183559240.1816440750.064691840
O  0.8183559240.6367118500.064691840
O  0.40.70.070255356
   Mn  0.50.00.123820165
   Mn  0.00.50.123820165
   Mn  0.50.50.123820165
O  0.60.30.177384975
O  0.1816440760.3632881500.182948491
O  0.1816440760.8183559250.182948491
O  0.6367118510.8183559250.182948491
   Fe  0.00.00.216685290
   Mn  0.30.70.247640331
   Fe  0.70.30.278595372
O  0.0299548160.5149774080.312332171
O  0.4850225910.5149774080.312332171
O  0.4850225910.9700451830.312332171
O  0.10.00.317895687
   Mn  0.166670.30.371460496
   Mn  0.166670.80.371460496
   Mn  0.70.80.371460496
O  0.30.60.425025306
O  0.3033785170.1516892590.430588821
O  0.8483107420.1516892590.430588821
O  0.8483107420.6966214840.430588821
   Fe  0.70.30.464325620
   Mn  0.00.00.495280662
K_POINTS automatic
  4 4 1   0 0 0




*Priyanka Makkar*
*Research Scholar*
*BITS Pilani K K Birla Goa Campus*
*India*




On Tue, Sep 25, 2018 at 7:54 PM Hari Paudyal 
wrote:

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> Hi Priyanka,
>
> If you provide your input/output file then it would be easy to figure out
> the problem exactly. This time I can only guess based on my experience
> using xcrysden. In each bfgs step you get lattice parameters and atomic
> position written in the output of vc-relax, I think you are missing those
> information. You can check your output if the system is relaxed correctly
> writing the output. Let us know, if any.
>
> Best,
> Hari Paudyal
> SUNY Binghamton, NY
>
> On Tue, Sep 25, 2018 at 4:41 AM Priyanka Makka

[QE-users] unable to open the output file of vc relax in xcrysden while performing calculation for slab

2018-09-25 Thread Priyanka Makkar
Hello all,
I am doing the calculation for making a slab of MnFe2O4 but the output file
is not opening in xcrysden after vc relax. It is giving the following error
as shown below. kindly help in getting the solution.

Your reply will be grateful.



   Operating system : Linux
[p20170414@kosambi ~]$ Package ImageMagick's convert: /usr/bin/convert
Package ImageMagick's import: /usr/bin/import
Package Xwd: /usr/bin/xwd
Executing: /opt/apps/xcrysden/bin/ftnunit
PWSCF version of the output: 6.1
TEXT-WIDGET: .a1.f1.t
PWSCF version of the output: 6.1
TEXT-WIDGET: .a2.f1.t
Executing: /usr/bin/gawk -f /opt/apps/xcrysden/Awk/pwo_coortype.awk
/home/p20170414/MnF-Slab/MnF-vc-relax.pw.out
ctypes = 0
pwOutputPresetWhat: /opt/apps/xcrysden/scripts/pwo2xsf.sh --latestcoor
/home/p20170414/MnF-Slab/MnF-vc-relax.pw.out
Executing: sh /opt/apps/xcrysden/scripts/pwo2xsf.sh --latestcoor
/home/p20170414/MnF-Slab/MnF-vc-relax.pw.out > pwo2xsf.xsf
Executing: sh /opt/apps/xcrysden/scripts/dummy.sh
/home/p20170414/MnF-Slab/MnF-vc-relax.pw.out
Number of Atoms:  0
Number of Frames: 0
Estimated number of bonds = 0
sInfo(dim) = 0; periodic(dim) = 0
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[QE-users] (no subject)

2018-07-23 Thread Priyanka Makkar
Dear Experts,
I am facing a problem in opening a PWscf output file for vc-relax in
Xcrysden. In the output file I am getting all the parameters zero when run
on server which are as follows:
Executing: sh /opt/apps/xcrysden/scripts/dummy.sh
/home/p20170414/MnF-Slab/MnF-slab-vc-relax.pw.out
Number of Atoms:  0
Number of Frames: 0
Estimated number of bonds = 0
sInfo(dim) = 0; periodic(dim) = 0

but in input file I am getting the following parameters
Executing: sh /opt/apps/xcrysden/scripts/pwi2xsf.sh
/home/p20170414/MnF-Slab/MnF-slab-vc-relax.pw.in
reading PRIMCOORD
Number of Atoms:  0
Number of Frames: 0
Estimated number of bonds = 0
sInfo(dim) = 3; periodic(dim) = 3
Executing: /opt/apps/xcrysden/bin/gengeom 0 1 11 1 1 1 1 xc_gengeom.31035
/tmp/xc_31035/pwi2xsf.xsf_out.raw
Executing: /opt/apps/xcrysden/bin/gengeom 2 1 11 1 1 1 1
/tmp/xc_31035/xc_struc.31035 /tmp/xc_31035/pwi2xsf.xsf_out.raw
reading PRIMCOORD
reading CONVCOORD
Number of Atoms:  46
Number of Frames: 12
natoms: 46 , ndel: 0
Filtered number of atoms: 46
Estimated number of bonds = 118
sInfo(dim) = 3; periodic(dim) = 3




 Anyone facing the same issue, please help me to solve this difficulty. I
will be waiting for the response.

Thanks and regards

*Priyanka Makkar*
*Research Scholar *

*Department of Chemistry*

*BITS PILANI K K BIRLA GOA CAMPUS  *
*+91-9650393163*
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