[QE-users] K_POINTS problem of band_interpolation.x

2024-05-15 Thread Shuai Zhao
Dear QE user,

I am studying the example of band_interpolation.x in the PP examples folder 
“~/qe-7.2/PP/examples/exx_interpolated_bands_example/pbe_fourier” 
I extract the pwscf.xml file directly from the filexml.tar.gz file using the 
tar commend. Then use the commend:

band_interpolation.x < fourier.in > fourier.out

and got this error:

PROGRAM: band_interpolation
k_points = none

%%
 Error in routine band_interpolation (1):
  K_POINTS card must be specified with tpiba_b
 %%

 stopping …

The input file fourier.in is directly used in the folder without any 
modification:

&INTERPOLATION
  method = 'fourier'
  miller_max = 7
/
ROUGHNESS
  3
  1.0d0  0.50d0  0.250d0
K_POINTS { tpiba_b }
  5
   L 20
   gG 20
   X 0
   1.0 1.0 0.0 30
   gG  1

Looking forward to hear a reply. Thanks in advance.

Best regards,

Shuai Zhao
Chongqing University of Technology 
P.R. China
___
The Quantum ESPRESSO community stands by the Ukrainian
people and expresses its concerns about the devastating
effects that the Russian military offensive has on their
country and on the free and peaceful scientific, cultural,
and economic cooperation amongst peoples
___
Quantum ESPRESSO is supported by MaX (www.max-centre.eu)
users mailing list users@lists.quantum-espresso.org
https://lists.quantum-espresso.org/mailman/listinfo/users

Re: [Pw_forum] (no subject)

2015-12-01 Thread Shuai
For some non-cubic structure, even I increase the density of K points, 
the Nscf still gives different fermi energy level.


but if I didn't use occupations  = 'Tetrahedra' for NSCF, it can produce 
the same Fermi energy level.


I suggest you try to change the occupations in nscf input file.

On 12/01/2015 05:02 PM, Tariq Sami wrote:

Dear all,
 I have a (very basic) question regarding band structure 
calculations.
One requires Fermi energy for band structure calculations but the are 
two different Fermi energies in the
scf and nscf outputs. Can anyone please tell which one should i use 
and what's the basic difference?

Thanks in advance



___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum


--
PhD candidate
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan

___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum

Re: [Pw_forum] imaginary frequency at extended Q point

2015-10-20 Thread Shuai
Dear Tanlin,

I cannot give you suggestions but I have a confusion that you relaxed 
the structure under 120 Ry of ecutwfc but for the SCF calculation you 
used 50 Ry.

I guess the total energy for 50 Ry SCF is NOT lowest (to some extent) 
with the structure relaxed by 120 Ry. I am not sure whether it will 
finally impact the result. Why you reduce the Ecut so significantly?

Best wishes,

Shuai

On 10/20/2015 04:19 PM, Lorenzo Paulatto wrote:
> Dear 潭影空人心,
> the imaginary frequencies could just be an artifact of the Fourier
> interpolation procedure, which means that you need to do the ph.x calculation
> on a finer grid.. If that is not possible, your best bet is to try to push
> convergence a bit and try to change the method of acoustic sum rule used.
>
> hth
>
> On Tuesday, October 20, 2015 09:36:53 AM 潭影空人心 wrote:
>> Dear all,   I used nq1 = 2, nq2 = 2, nq3 = 2 and nq1 = 4, nq2 = 4, nq3 = 4
>> ,respectively, to do a phonon calculation. There is no imaginary frequency
>> at the calculated Q points, but after calculations of Q2R and MATDYN,
>> imaginary frequencies appear near GAMMA point(not GAMMA point).
>   
>> My settings are as follows:
>> 1.lattice relaxation under pressure:
>> &control
>>  calculation   = 'vc-relax'
>> 
>   restart_mode  = 'from_scratch'
>>  prefix= 'cras'
>> 
>   pseudo_dir=
>> '/data1/tan1/software/espresso-5.1/pseudo/' outdir=
>> './tempdir/'
>>  etot_conv_thr = 1.0D-6
>>  forc_conv_thr = 1.0D-4
>>  tstress   = .true.
>>  tprnfor   = .true.
>>   
>   / &system ibrav = 8
>>  A = 5.58
>>  B = 3.36
>>  C = 6.17
>>  nat   = 8
>>  ntyp  = 4
>>  ecutwfc   = 120
>>  occupations   = 'smearing'
>>  smearing  = 'methfessel-paxton'
>>  degauss   = 0.04
>>  nspin = 2
>>  starting_magnetization(1) = -1
>>  starting_magnetization(2) = 1
>>  starting_magnetization(3) = 0
>>  starting_magnetization(4) = 0
>> /
>> &electrons
>>  electron_maxstep  = 100
>>  conv_thr  = 1.0d-6
>>  mixing_beta   = 0.7
>>  
>   /
>> &ions
>>  ion_dynamics = 'bfgs'
>> /
>> &cell
>> press = 1500
>> cell_dynamics = 'bfgs'
>> press_conv_thr= 0.1
>> cell_factor   = 2.5d0
>> /
>> ATOMIC_SPECIES
>> Cr1   51.9961   Cr.pz-hgh.UPF
>> Cr2   51.9961   Cr.pz-hgh.UPF
>> As1   74.9216   As.pz-hgh.UPF
>> As2   74.9216   As.pz-hgh.UPF
>> ATOMIC_POSITIONS (crystal)
>> Cr1   0.012000  0.25  0.201000  1 0 1
>> Cr2   0.988000  0.75  0.799000  1 0 1
>> Cr2   0.512000  0.25  0.299000  1 0 1
>> Cr1   0.488000  0.75  0.701000  1 0 1
>> As1   0.195000  0.25  0.582000  1 0 1
>> As2   0.805000  0.75  0.418000  1 0 1
>> As2   0.695000  0.25  0.918000  1 0 1
>> As1   0.305000  0.75  0.082000  1 0 1
>> K_POINTS {automatic}
>>
>   6 8 6 0 0 0
>>
>>
>>
>>
>> 2.interior coordination relaxation:
>> All is the same as above, but "ecutwfc = 50"
>> 3.self-consistent iteration for phonon calculation:
>> &control
>> calculation   = 'scf'
>>  restart_mode  = 'from_scratch' prefix
>>   = 'cras'   pseudo_dir
>>= '/data1/tan1/software/espresso-5.1/pseudo/' outdir
>>= './tempdir/'  tstress   = .true.
>> tprnfor   = .true.
>> /
>>   &system
>> ibrav = 0 celldm(1) =
>> 10.54467182 nat   = 8 ntyp
>> = 4 ecutwfc   = 50 occupations   =
>> 'smearing' smearing  = 'methfessel-paxton' degauss
>>   

Re: [Pw_forum] Convergence NOT achieved for Sr2MnMoO6 using PAW pp

2015-10-09 Thread Shuai

Dear Stefano and Pang,

Thank you very much for your advices.

I reduced to 10 atoms, then it converged well. But when I enlarged to 40 
atoms, it cannot converge with the same parameters of 10 atoms.


I then made a little change about the lattice parameters:

Sr   (0, 0, 0)  -->  Sr   (0.25, 0.25, 0.25)
Mn  (0.25, 0.25, 0.25)   -->  Mn  (0, 0, 0)
Mo  (0.75, 0.25, 0.25)   -->  Mo  (0.5, 0, 0)
O(0.25, 0.25, 0)-->  O(0.25, 0, 0)

and it can also converged well. What confused me is the difference 
between two lattice parameters is only a displacement, why causing the 
different convergence results?


Best regards,

Shuai Zhao

On 10/09/2015 04:43 PM, stefano de gironcoli wrote:

I would give a shot to local-TF, mixing-beta not too small (~ 0.3).

is it a metal ? does increasing degauss help ?
is this an instability related to the occupation of the U-projectors ?
does it converge if you if you remove U ?
does the fcc cell with 10 atoms converge ?

stefano

On 09/10/2015 09:03, 庞瑞(PANG Rui) wrote:

Dear Zhao
The most efficient way is reducing the mixing_beta, you may try 0.1 
-0.01 or even smaller if you can afford the CPU time. Is 50 enough 
for O? You may check it, the smallest value usually is given in the 
PP file. A personal experience is that do not use semi-core PP. I do 
not understand the reason but I seldom get convergence when using 
semi-core PPs in periodical cases with PWSCF.

Good luck




--


庞瑞 (PANG Rui)

South University of Science and Technology of China/Department of Physics

No.1088,Xueyuan Road, Shenzhen,Guangdong

-- Original --
*From: * "Shuai";
*Date: * Fri, Oct 9, 2015 12:00 PM
*To: * "PWSCF Forum";
*Subject: * [Pw_forum] Convergence NOT achieved for Sr2MnMoO6 using 
PAW pp

Dear User:

I am doing the SCF calculation of Sr2MnMoO6 using PAW Potentials but it
cannot converged.

I checked different Ecut (30Ry, 40Ry or 50Ry), mixing mode (TF or
plain), diagonalization (david or cg) and mixing_beta (0.3, 0.7), but it
always not converged.

The SCF input is:

  &control
   calculation   = 'scf'
   prefix   = 'Sr2MnMoO6'
   restart_mode  = 'from_scratch'
   pseudo_dir= '/'
   outdir   = '/'
  /
  &system
   ibrav= 1
   celldm(1) = 15.27295
   nat   = 40
   ntyp = 4
   ecutwfc= 50
   ecutrho= 600
   occupations   = 'smearing'
   smearing  = 'mp'
   degauss= 0.01
   lda_plus_u = .true.
   Hubbard_U(2)  = 4.0
  /
  &electrons
   conv_thr = 1e-8
   mixing_mode   = 'TF'
   mixing_beta   = 0.7
   diagonalization = 'david'
  /
ATOMIC_SPECIES
   Sr87.620   Sr.pbe-spn-kjpaw_psl.1.0.0.UPF
   Mn   54.938   Mn.pbe-spn-kjpaw_psl.1.0.0.UPF
   Mo   95.960   Mo.pbe-spn-kjpaw_psl.1.0.0.UPF
   O 15.999   O.pbe-n-kjpaw_psl.1.0.0.UPF
ATOMIC_POSITIONS (crystal)
   Sr0.   0.   0.
   Sr0.5000   0.   0.
   Sr0.   0.5000   0.
   Sr0.5000   0.5000   0.
   Sr0.   0.   0.5000
   Sr0.5000   0.   0.5000
   Sr0.   0.5000   0.5000
   Sr0.5000   0.5000   0.5000
   Mn   0.2500   0.2500   0.2500
   Mo   0.7500   0.2500   0.2500
   Mo   0.2500   0.7500   0.2500
   Mn   0.7500   0.7500   0.2500
   Mo   0.2500   0.2500   0.7500
   Mn   0.7500   0.2500   0.7500
   Mn   0.2500   0.7500   0.7500
   Mo   0.7500   0.7500   0.7500
   O 0.2500  -0.0140   0.2500
   O-0.0140   0.2500   0.2500
   O 0.2500   0.2500  -0.0140
   O 0.7500   0.0140   0.2500
   O 0.5140   0.2500   0.2500
   O 0.7500   0.2500   0.0140
   O 0.2500   0.5140   0.2500
   O 0.0140   0.7500   0.2500
   O 0.2500   0.7500   0.0140
   O 0.7500   0.4860   0.2500
   O 0.4860   0.7500   0.2500
   O 0.7500   0.7500  -0.0140
   O 0.2500   0.0140   0.7500
   O 0.0140   0.2500   0.7500
   O 0.2500   0.2500   0.5140
   O 0.7500  -0.0140   0.7500
   O 0.4860   0.2500   0.7500
   O 0.7500   0.2500   0.4860
   O 0.2500   0.4860   0.7500
   O-0.0140   0.7500   0.7500
   O 0.2500   0.7500   0.4860
   O 0.7500   0.5140   0.7500
   O 0.5140   0.7500   0.7500
   O 0.7500   0.7500   0.5140
K_POINTS (automatic)
   4 4 4 1 1 1

Thanks in advance for your suggestions.

Best regards,

Shuai Zhao

--
PhD candidate
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan

___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum


___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum




___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mail

[Pw_forum] Convergence NOT achieved for Sr2MnMoO6 using PAW pp

2015-10-08 Thread Shuai
Dear User:

I am doing the SCF calculation of Sr2MnMoO6 using PAW Potentials but it 
cannot converged.

I checked different Ecut (30Ry, 40Ry or 50Ry), mixing mode (TF or 
plain), diagonalization (david or cg) and mixing_beta (0.3, 0.7), but it 
always not converged.

The SCF input is:

  &control
   calculation   = 'scf'
   prefix   = 'Sr2MnMoO6'
   restart_mode  = 'from_scratch'
   pseudo_dir= '/'
   outdir   = '/'
  /
  &system
   ibrav= 1
   celldm(1) = 15.27295
   nat   = 40
   ntyp = 4
   ecutwfc= 50
   ecutrho= 600
   occupations   = 'smearing'
   smearing  = 'mp'
   degauss= 0.01
   lda_plus_u = .true.
   Hubbard_U(2)  = 4.0
  /
  &electrons
   conv_thr = 1e-8
   mixing_mode   = 'TF'
   mixing_beta   = 0.7
   diagonalization = 'david'
  /
ATOMIC_SPECIES
   Sr87.620   Sr.pbe-spn-kjpaw_psl.1.0.0.UPF
   Mn   54.938   Mn.pbe-spn-kjpaw_psl.1.0.0.UPF
   Mo   95.960   Mo.pbe-spn-kjpaw_psl.1.0.0.UPF
   O 15.999   O.pbe-n-kjpaw_psl.1.0.0.UPF
ATOMIC_POSITIONS (crystal)
   Sr0.   0.   0.
   Sr0.5000   0.   0.
   Sr0.   0.5000   0.
   Sr0.5000   0.5000   0.
   Sr0.   0.   0.5000
   Sr0.5000   0.   0.5000
   Sr0.   0.5000   0.5000
   Sr0.5000   0.5000   0.5000
   Mn   0.2500   0.2500   0.2500
   Mo   0.7500   0.2500   0.2500
   Mo   0.2500   0.7500   0.2500
   Mn   0.7500   0.7500   0.2500
   Mo   0.2500   0.2500   0.7500
   Mn   0.7500   0.2500   0.7500
   Mn   0.2500   0.7500   0.7500
   Mo   0.7500   0.7500   0.7500
   O 0.2500  -0.0140   0.2500
   O-0.0140   0.2500   0.2500
   O 0.2500   0.2500  -0.0140
   O 0.7500   0.0140   0.2500
   O 0.5140   0.2500   0.2500
   O 0.7500   0.2500   0.0140
   O 0.2500   0.5140   0.2500
   O 0.0140   0.7500   0.2500
   O 0.2500   0.7500   0.0140
   O 0.7500   0.4860   0.2500
   O 0.4860   0.7500   0.2500
   O 0.7500   0.7500  -0.0140
   O 0.2500   0.0140   0.7500
   O 0.0140   0.2500   0.7500
   O 0.2500   0.2500   0.5140
   O 0.7500  -0.0140   0.7500
   O 0.4860   0.2500   0.7500
   O 0.7500   0.2500   0.4860
   O 0.2500   0.4860   0.7500
   O-0.0140   0.7500   0.7500
   O 0.2500   0.7500   0.4860
   O 0.7500   0.5140   0.7500
   O 0.5140   0.7500   0.7500
   O 0.7500   0.7500   0.5140
K_POINTS (automatic)
   4 4 4 1 1 1

Thanks in advance for your suggestions.

Best regards,

Shuai Zhao

-- 
PhD candidate
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan

___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum


[Pw_forum] Energy of O2 in its triplet ground state

2015-01-16 Thread Shuai

Dear all,

I want to calculate the energy of the O2 in its triplet ground state. I 
have searched on the sites 
(http://qe-forge.org/pipermail/pw_forum/2012-July/099147.html) and do 
some tentative calculations.


Firstly, I calculated the two O atoms in a enough large box. the input 
file is:


 &control
   calculation= 'relax'
   prefix= 'O2'
   pseudo_dir= '/'
   outdir= '/'
 /
 &system
   ibrav = 1, celldm(1) = 30.0
   nat = 2, ntyp = 1,
   ecutwfc = 35, ecutrho = 280
   occupations = 'smearing', degauss = 0.01
   nspin = 2, starting_magnetization(1) = 0.3
 /
 &electrons
   mixing_mode= 'plain'
   mixing_beta= 0.3
   conv_thr= 1.0d-8
   electron_maxstep = 200
 /
 &ions
   ion_dynamics= 'bfgs'
 /
ATOMIC_SPECIES
O15.999O.pbe-n-kjpaw_psl.1.0.0.UPF
ATOMIC_POSITIONS {angstrom}
O5.0005763345.0290930415.029093041
O5.0094236665.8709069595.870906959
K_POINTS {gamma}

Secondly, I calculated the single O atom.

Finally, I calculated the binding energy of O2 by "2 x single O atom 
energy - O2 eneygy". But I am not sure it is correct or not. My question 
is if the "binding energy" is close to the experimental value ~ 5.7 eV, 
does it mean that the calculated energy of O2 is accurate?


Thanks in advance.

Sincerely,

S. Zhao
--
PhD candidate
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan
___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum

[Pw_forum] error in the bader analysis

2015-01-08 Thread shuai

Dear QE users,

I am doing the Bader analysis using Henkelman's code:

http://theory.cm.utexas.edu/henkelman/code/bader/

I followed the introduction from 
http://qe-forge.org/pipermail/pw_forum/2013-May/101965.html


After a SCF calculation, I used pp.x to obtain the charge file. The 
input of pp.x is:


 &inputpp
prefix   = 'STO'
outdir   = '/home/QE_jobs/Inorganic/STO/Bader/'
filplot   = 'STO_charge'
plot_num = 17
 /
 &plot
nfile = 1
filepp(1)  = 'STO_charge'
weight(1)= 1.0
iflag = 3
output_format= 5
fileout= 'STO_charge.dat'
e1(1) = 1.0, e1(2) = 0.0, e1(3) = 0.0,
e2(1) = 0.0, e2(2) = 1.0, e2(3) = 0.0,
e3(1) = 0.0, e3(2) = 0.0, e3(3) = 1.0,
 /

And then, I calculate the bader charge using Henkelman's code, got the 
error message:


  GRID BASED BADER ANALYSIS  (Version 0.28a 07/12/12)

  OPEN ... SMMO_charge
  GAUSSIAN-STYLE INPUT FILE
forrtl: severe (59): list-directed I/O syntax error, unit 100, file 
/home/shuai/QE_jobs/Inorganic/SMMO/Bader/SMMO_charge

Image  PCRoutine LineSource
bader  004B57CA  Unknown Unknown  Unknown
bader  004B42C6  Unknown Unknown  Unknown
bader  00472D80  Unknown Unknown  Unknown
bader  0043131E  Unknown Unknown  Unknown
bader  0043085F  Unknown Unknown  Unknown
bader  00456A03  Unknown Unknown  Unknown
bader  0040CEC3  Unknown Unknown  Unknown
bader  0040ECE4  Unknown Unknown  Unknown
bader  0040058C  Unknown Unknown  Unknown
bader  004004DC  Unknown Unknown  Unknown
bader  004CF69B  Unknown Unknown  Unknown
bader  004003A9  Unknown Unknown  Unknown

In fact, I down the H2O example from Henkelman's page, and ran the 
example successfully showed followed:


  GRID BASED BADER ANALYSIS  (Version 0.28a 07/12/12)

  OPEN ... CHG_H2O
  GAUSSIAN-STYLE INPUT FILE
  FFT-grid:   201 x 201 x 201
  CLOSE ... CHG_H2O

  RUN TIME:1.75 SECONDS

  CALCULATING BADER CHARGE DISTRIBUTION
 0  10  25  50  75  100
  PERCENT DONE:  **

  REFINING AUTOMATICALLY
  ITERATION: 1
  EDGE POINTS:291391
  REASSIGNED POINTS:   30629
  ITERATION: 2
  CHECKED POINTS: 207031
  REASSIGNED POINTS:2839
  ITERATION: 3
  CHECKED POINTS:  16568
  REASSIGNED POINTS: 346
  ITERATION: 4
  CHECKED POINTS:   3054
  REASSIGNED POINTS:   7
  ITERATION: 5
  CHECKED POINTS:123
  REASSIGNED POINTS:   0

  RUN TIME:  21.40 SECONDS

  CALCULATING MINIMUM DISTANCES TO ATOMS
 0  10  25  50  75  100
  PERCENT DONE:  **

  RUN TIME:1.87 SECONDS

  WRITING BADER ATOMIC CHARGES TO ACF.dat
  WRITING BADER VOLUME CHARGES TO BCF.dat

  NUMBER OF BADER MAXIMA FOUND:  3
  SIGNIFICANT MAXIMA FOUND:  3
   NUMBER OF ELECTRONS:   10.00413


I think maybe any mistake in the format of the charge output, but I 
can't fix it. Please give me suggestion and thanks in advance.


Best regards,

Shuai ZHAO
___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum

[Pw_forum] Asterisks in the output of the EXX scf calculation

2014-11-07 Thread shuai

Dear QE users,

I found some asterisks in the output of the EXX scf calculation. Is this 
a problem?


 End of self-consistent calculation

  k = 0.1250 0.1250 0.1250 (   835 PWs)   bands (ev):

***-997.9124
  -997.9064 -56.1824 -54.8866 -30.7739 -30.7739 -30.6988 -6.6122  -4.5868
-4.5868  -4.3601  -3.3399  -3.3399  -2.9208   9.4223 9.4224   9.8135
10.4095

  k = 0.1250 0.1250 0.3750 (   846 PWs)   bands (ev):

**-977.3748-975.0306-930.5885-918.4427-886.8817-865.9690
  -799.5980 -56.1816 -54.0570 -30.9205 -30.8097 -30.7602 -6.8481  -5.4203
-4.3657  -4.2079  -3.7042  -3.4980  -2.3643   1.3967 7.9681   8.0919
 9.4935

  k = 0.1250 0.3750 0.3750 (   846 PWs)   bands (ev):

**-992.8277-976.2631-944.1689-931.0699-916.4460-841.0418
  -822.0322 -56.1817 -54.0565 -30.9378 -30.8939 -30.7903 -16.6606  -5.8379
-5.0508  -4.8356  -4.4762  -3.8834  -1.9840  -1.5341 5.4616   7.0318
 7.7129

  k = 0.3750 0.3750 0.3750 (   850 PWs)   bands (ev):

*-994.8860-994.8799-972.5245-961.6722-957.9788-957.9671-919.9192
  -919.9135 -56.1807 -53.7768 -30.9508 -30.9508 -30.8499 -16.5073 -16.5061
-5.1084  -4.5639  -4.5061  -4.5060  -2.4662  -2.3105 -2.3104   6.8985
 7.3988

 highest occupied, lowest unoccupied level (ev): -3.3399   -2.9208

 convergence has been achieved in   9 iterations

the input is;
 &control
  calculation = 'scf'
   prefix = 'STO'
 restart_mode = 'from_scratch'
   pseudo_dir = '/'
   outdir = '/'
 /
 &system
ibrav = 1
celldm(1) = 7.379
  nat = 5
 ntyp = 3
 nbnd = 25
  ecutwfc = 25
  occupations = 'fixed'
input_dft = 'gaupbe'
 nqx1 = 1
 nqx2 = 1
 nqx3 = 1
x_gamma_extrapolation = .false.
 exxdiv_treatment = 'none'
 /
 &electrons
 conv_thr = 1e-6
  mixing_beta = 0.5
 /
ATOMIC_SPECIES
Sr87.62Sr.pbe-spn-kjpaw_psl.1.0.0.UPF
Ti47.867Ti.pbe-spn-kjpaw_psl.1.0.0.UPF
O15.999O.pbe-n-kjpaw_psl.1.0.0.UPF
ATOMIC_POSITIONS (alat)
Sr000
Ti0.50.50.5
O0.50.50
O0.500.5
O00.50.5
K_POINTS (automatic)
 4 4 4 1 1 1

Thanks in advance.

Best regards

S. Zhao

--
PhD student
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan
___
Pw_forum mailing list
Pw_forum@pwscf.org
http://pwscf.org/mailman/listinfo/pw_forum

[Pw_forum] about the output of the epsilon.x

2014-09-20 Thread shuai
Dear Paolo,

Thank you very much for your suggestion.

Best regards,

S. Zhao

On 2014?09?19? 22:50, Paolo Giannozzi wrote:
> On Fri, 2014-09-19 at 22:00 +0900, shuai wrote:
>
>> To whom has experience with epsilon.x
> not to me. Anyway, it took me 2' to follow "wmin" and "wmax" in code
> PP/src/epsilon.f90: in subroutine "grid_build", you have
>
>! set the energy grid
>!
>alpha = (wmax - wmin) / REAL(nw, DP)
>DO iw = 1, nw
>wgrid(iw) = wmin + iw * alpha
>ENDDO
>
> which clearly shows that the first grid point is not wmin but
> wmin + (wmax-wmin)/nw (nw being the number of grid points). I
> guess this should be
>
>alpha = (wmax - wmin) / REAL(nw-1, kind=DP)
>DO iw = 1, nw
>wgrid(iw) = wmin + (iw-1) * alpha
>ENDDO
>
> Paolo
>
>> I calculated the dielectric tensor using epsilon.x and got the output
>> files described in the eps_man.pdf. the input is:
>>
>>&inputpp
>>   outdir = '/'
>>   prefix = 'Si'
>>   calculation = 'eps'
>>/
>>&energy_grid
>>   smeartype = 'gauss'
>>   intersmear = 0.136d0
>>   intrasmear = 0.0d0
>>   wmax = 10
>>   wmin = 0
>>   nw = 200
>>   shift = 0
>>/
>>
>>
>> But in the output files the values of the frequency are from 0.005 to 10
>> with an increment of 0.005, in total 200 values in accordance with the
>> 'nw = 200'. My question is how to set for getting the results of
>> frequency= 0?
>>
>> Thanks in advance.
>>
>> Sincerely,
>>
>> S. Zhao
>>

-- 
PhD student
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan



[Pw_forum] about the output of the epsilon.x

2014-09-19 Thread shuai
To whom has experience with epsilon.x,

I calculated the dielectric tensor using epsilon.x and got the output 
files described in the eps_man.pdf. the input is:

  &inputpp
 outdir = '/'
 prefix = 'Si'
 calculation = 'eps'
  /
  &energy_grid
 smeartype = 'gauss'
 intersmear = 0.136d0
 intrasmear = 0.0d0
 wmax = 10
 wmin = 0
 nw = 200
 shift = 0
  /


But in the output files the values of the frequency are from 0.005 to 10 
with an increment of 0.005, in total 200 values in accordance with the 
'nw = 200'. My question is how to set for getting the results of 
frequency= 0?

Thanks in advance.

Sincerely,

S. Zhao

-- 
PhD student
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan



[Pw_forum] About the output of tddft

2014-07-30 Thread shuai
Dear all,

I followed the hands-on tutorial 
(http://media.quantum-espresso.org/santa_barbara_2009_07/slides-exercices/Tddfpt_tutorial.pdf)
 
to calculate the Na2 spectrum by TDDFT. Both of this tutorial and the 
CPC paper (the last sentence in the last but two paragraph in the 7th 
page) mentioned "the absorption coefficient can be found in the lines 
starting with */alpha/*" in the output file "/prefix/.plot".
But in my calculated output file "na2.plot", I didn't find any line 
starting with /*alpha*/. My QE version is 5.1. I post my input file here.

for turbo_lanczos.x

  &lr_input
 restart=.false.
 restart_step=500
 prefix='na2'
 outdir='/'
  /
  &lr_control
 itermax=1000
 ipol=4
  /

for turbo_spectrum.x

  &lr_input
 prefix = 'na2'
 outdir = '/'
 itermax = 1000
 itermax0 = 1000
 extrapolation = 'no'
 omegmax = 5
 delta_omeg = 0.001d0
 omeg = 0.d0
 ipol = 4
 epsil = 0.002d0
  /

Many thanks.

Best regards,

Yusen

-- 
Graduate student
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan

-- next part --
An HTML attachment was scrubbed...
URL: 
http://pwscf.org/pipermail/pw_forum/attachments/20140730/3d9daeb4/attachment.html
 


[Pw_forum] About the absorption spectrum of TDDFT

2014-07-22 Thread shuai
Hello all,
In the output file "**.plot" of turbo_spectrum.x, the 2nd column is the 
Energy [Ry], the 4th is Im part, and a line of S(E). My question:
1. Does the "S(E)" line demonstrate the relation between Energy and 
absorption intensity?
2. If so, how to translate it to wavelength versus absorption intensity?

Thanks in advance.

S. Zhao

-- 
Graduate student
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan



[Pw_forum] Could the TDDFT be used to calculate the inorganic semiconductor?

2014-07-04 Thread shuai
Dear all,

I'm a newbie and trying to calculate the optical property of inorganic 
semiconductor.
I noticed that the epsilon.x code could be used to the dielectric 
function, but doesn't implement in USPP. According to the previous 
advices in this forum, the TDDFT code would be an alternative. But I 
found from the publications that the TDDFT is commonly used to molecules 
(such as organic dyes).
So I wonder the TDDFT code can be used to calculate the inorganic 
semiconductor?

Thanks in advance.

Shuai

-- 
Graduate student
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan



[Pw_forum] Composition can be replaced by a background charge?

2014-06-16 Thread shuai
Dear QE users,

I had read a paper about the calculation of NH2CH=NH2PbI3 
(dx.doi.org/10.1021/cm404006p | Chem. Mater. 2014, 26, 1485?1491). In 
this paper, the researcher calculated the electronic structure using 
SIESTA, and the HC(NH2)2 was ignored and a uniform background charge 
density was added to neutralize the charge.
Thus, my question is whether the ESPRESSO can calculate by replacing the 
part of compound (e.g., CH3NH3 or CH(NH2)2) using a uniform background 
charge? Where can I find the tutorials about this?

Thanks in advance.

Best,

Shuai

-- 
PhD student
Graduate School of Life Science and Systems Engineering
Kyushu Institute of Technology, Japan



[Pw_forum] Questions about the relax/vc-relax calculation

2014-06-01 Thread Shuai
Dear QE users,

I am a new learner and I have two questions about the relax/vc-relax 
calculation.

The first is that if I do scf calculations by modifying the lattice 
constant and I could obtain the lattice constant with the lowest energy. 
And then on this basis if I do a relax calculation (not vc-relax), does 
its work equal to that of vc-relax?

The second one is about the vc-relax calculation. After got the vc-relax 
result, I could find the new cell_parameters and atomic positions from 
the /vc-relax.out/. Thus do I need to set the new cell_parameters and 
atomic positions as the new parameters in the file of /nscf.in/? or 
maybe the nscf calculation can read the cell_parameters and atomic 
positions automatically from the vc-relax.out?

Thanks in advance.

Best regards,

Shuai

--
*Graduate School of Life Science and Systems Engineering*
*Kyushu Institute of Technolog, Japan*
-- next part --
An HTML attachment was scrubbed...
URL: 
http://pwscf.org/pipermail/pw_forum/attachments/20140601/644836b9/attachment.html