[Pw_forum] Enquiry about the Pseudopotential

2016-02-08 Thread song kenan
Dear All,

I am a new user of Quantum Espresso code. I have carbon, hydrogen and bismuth 
atoms in my system and want to do the non-collinear calculation. Can I use 
C.pbe-mt_fhi.UPF, H.pbe-kjpaw.UPF and Bi_MT_PBE.UPF as the pseudopotentials for 
these three atoms when calculating the band structure? I check the 
pseudopotential files and found the the following information.

For C.pbe-mt_fhi.UPF

Generated using FHI98PP, converted with fhi2upf.x v.5.0.2
Origin: Abinit web site
Date: 08-Sep-2012 (PG)
Pseudopotential type: SL
Element:  C
Functional: PBE

Suggested minimum cutoff for wavefunctions:   0. Ry
Suggested minimum cutoff for charge density:   0. Ry
The Pseudo was generated with a Scalar-Relativistic Calculation
L component and cutoff radius for Local Potential:  2   0.


For H.pbe-kjpaw.UPF

Generated using "atomic" code by A. Dal Corso (espresso distribution)
Author: "Lorenzo Paulatto" /paula...@sissa.it/
Generation date: 15Apr2008
Pseudopotential type: PAW
Element:  H
Functional:  SLA  PW   PBX  PBC

Suggested minimum cutoff for wavefunctions:  46. Ry
Suggested minimum cutoff for charge density: 201. Ry
The Pseudo was generated with a Non-Relativistic Calculation
L component and cutoff radius for Local Potential:  1   0.7500

For Bi_MT_PBE.UPF

Generated using "atomic" code by A. Dal Corso (espresso distribution)
Author: anonymous
Generation date:  5Mar2010
Pseudopotential type: NC
Element: Bi
Functional: PBE

Suggested minimum cutoff for wavefunctions:  27. Ry
Suggested minimum cutoff for charge density: 108. Ry
The Pseudo was generated with a Fully-Relativistic Calculation
L component and cutoff radius for Local Potential:  0   2.2000
Pseudopotential contains additional information for spin-orbit calculations.


The Bi pseudopotential is fully relativistic and the C one is scalar 
relativistic; while H one is non relativistic. If I want to do the 
non-collinear calculation of band structure for my system, would anyone please 
give some suggestions on what pseudopotentials I should use for these atoms? 
Thank you very much in advance.

Kind regards,

Kieran Song
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[Pw_forum] Enquiry about Electrostatic Potential Energy

2015-07-15 Thread song kenan
Dear All,

I am trying to calculate the electrostatic potential energy by qunatum 
espresso. My parameters for pp.in file is written below.


   outdir='/home/likewise-open/ICN/ksong/Documents/6QLBi2Se3_halfrdipole/tmp',
   plot_num=11
   filplot = '6QLBi2Se3_halfr.pot'
/
 

   iflag=3,
   output_format=3
/

When I submit my calculation, I got an error information below.

application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0

I also checked my CRASH file and the information is written below.

 %%
 task # 0
 from chdens : error # 1
 nx,ny,nz, required
 %%


The pp.out file shows the information below.

 Program POST-PROC v.5.1.2 starts on 15Jul2015 at  9:56:51 

 This program is part of the open-source Quantum ESPRESSO suite
 for quantum simulation of materials; please cite
 "P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
  URL http://www.quantum-espresso.org;, 
 in publications or presentations arising from this work. More details at
 http://www.quantum-espresso.org/quote

 Parallel version (MPI), running on16 processors
 R & G space division:  proc/nbgrp/npool/nimage =  16

   Info: using nr1, nr2, nr3 values from input

   Info: using nr1s, nr2s, nr3s values from input

 IMPORTANT: XC functional enforced from input :
 Exchange-correlation  = PBE ( 1  4  3  4 0 0)
 Any further DFT definition will be discarded
 Please, verify this is what you really want


 Parallelization info
 
 sticks:   dense  smooth PW G-vecs:dense   smooth  PW
 Min  39  39 1113758137582167
 Max  40  40 1213776137762220
 Sum 637 637187   220333   220333   35309


 Calling punch_plot, plot_num =  11
 Writing data to file  6QLBi2Se3_halfr.pot
 Reading data from file  6QLBi2Se3_halfr.pot

 %%
 Error in routine chdens (1):
 nx,ny,nz, required
 %%

 stopping ...

===
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   EXIT CODE: 1
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===

Could anyone give me any suggestion on how to sort out this problem?

Thanks in Advance.

Kieran
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[Pw_forum] Enquiry about the Electrostatic Potential

2015-05-28 Thread song kenan
Dear All,

I am trying to use Quantum Espresso to calculate the 
electrostatic potential energy for my system after the SCF calculation 
done. I am not sure about the result content in system.pot file. I put my pp.in 
and part of my system.pot files below. Would anyone 
kindly tell me what data I can use in system.pot file to get the 
electrostatic potential energy along z axis? Many thanks in advance.

My pp.in file

prefix='5QLBi2Se3_mr'
outdir='/home/likewise-open/ICN/ksong/Documents/5QLBi2Se3_mrbackup1/tmp/'
filplot='5QLBi2Se3_mr1.pot'
plot_num=11
/

Part of My system.pot file
   
  32  32 512  32  32 512  25   2
 07.75916043  0.  0.  0.  
0.  0.
   1.0.0. 
 -0.501217737   0.866025403778197480. 
  -6.6678505368968752E-006   3.8496863569861876E-006   16.691579978613341 
  225.69993924904.00   37.0011
   1   Bi5.00
   2   Se6.00
   1  -0.011310.006532.8308919641
   2  -0.006030.003481.5105879882
   3   0.529250.2886734465.1930843631
   4   0.534520.2886731413.8746164602
   5   0.525030.2886736896.2504959552
   6  -0.017030.009834.2626956951
   7  -0.022290.012875.5806628502
   8  -0.076520.5773546876.6385751891
   9  -0.057590.5773535941.8990010541
  10  -0.062860.5773538983.2189711992
  11   0.540550.2886727932.3655307152
  12  -0.068890.5773542464.7278900292
  13  -0.039730.022949.9461786781
  14  -0.034470.019908.6282115232
  15   0.500830.288675087   12.3097064031
  16   0.506100.288674782   10.9897362582
  17   0.519760.2886739947.5702991841
  18  -0.045450.02624   11.3779824081
  19  -0.050730.02929   12.6981194692
  20  -0.081790.5773549917.9583784182
  21  -0.086020.5773552359.0159569251
  22  -0.091280.577355539   10.3340909962
  23  -0.028380.016397.1044371862
  24   0.512130.2886744359.4809843442
  25  -0.097310.577355887   11.8433436582
  5.772298294E-01  5.773071795E-01  5.772545392E-01  5.773188601E-01  
5.773067513E-01
  5.771967928E-01  5.774445006E-01  5.773231264E-01  5.774004831E-01  
5.775318461E-01
  5.775734291E-01  5.774892435E-01  5.771917131E-01  5.771040644E-01  
5.772759125E-01
  5.774782464E-01  5.773745405E-01  5.774782946E-01  5.772758591E-01  
5.771041135E-01
  5.771917384E-01  5.774892353E-01  5.775733835E-01  5.775318541E-01  
5.774005710E-01
  5.773231206E-01  5.77094E-01  5.771967890E-01  5.773067493E-01  
5.773188938E-01
  5.772544836E-01  5.773072330E-01  5.773072330E-01  5.773072332E-01  
5.773751124E-01
  5.771342497E-01  5.772184821E-01  5.772746559E-01  5.775071669E-01  
5.774817575E-01
  5.770753598E-01  5.772579022E-01  5.773176257E-01  5.773036116E-01  
5.772402434E-01
  5.771482048E-01  5.773498542E-01  5.775592774E-01  5.771371869E-01  
5.771372919E-01

Kind regards,

Kieran Song   ___
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