Re: [vox-tech] Matlab question

[Jeff Newmiller]

On Sat, 12 Jan 2002, Kevin Dawson wrote:

> 
> Hi,
> 
> Do you know how to parse Matlab data by Perl or C? If I save a matrix
> from Matlab, it's anything but text. Matlab (Linux student version)
> doesn't offer an export option in other formats than (.mat).

Haven't used Matlab in years, and quick search on the web failed to
uncover any such utilities.

Two suggestions: try Octave, a free analysis package similar to Matlab, or
try to set up a shell-accessible script that invokes Matlab, loads the mat
file, displays the variables of interest to stdout, and quits.  Then use
Perl to invoke that command and operate on the output.

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RE: [vox-tech] Matlab question

[Holland, Matt]

Try "help dlmwrite" in Matlab.  You can use it to write a matrix to a plain
text file using whatever delimiter you desire.  I don't have Matlab in front
of me at the moment, so I forget the exact syntax, but it's pretty simple.

Matt 

-Original Message-
From: Kevin Dawson
To: [EMAIL PROTECTED]
Sent: 1/12/2002 9:10 PM
Subject: [vox-tech] Matlab question

Hi,

Do you know how to parse Matlab data by Perl or C? If I save a matrix
from Matlab, it's anything but text. Matlab (Linux student version)
doesn't offer an export option in other formats than (.mat).

Thank you for your help,
Kevin

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Re: [vox-tech] (no subject)

[Henry House]

On Sat, Jan 12, 2002 at 03:21:17PM -0800, Ryan wrote:
> What is that `winmail.dat` attachment?

It is added by certain Microsoft mail software automatically. It usually does
nothing but waste space and bandwidth. If the message has any real
attachments, they are encoded inside the winmail.dat amy may be extracted
using the handy program tnef.

> On Saturday, January 12 2002 12:21 pm, Eric C Moloy wrote:
> > Hello.  I am getting started with Red Hat 7.1 for the first time, and I am
> > having trouble connecting to the web.  The eth0 device fails to inititalize
> > at startup.  The following settings appear for the eth0 device:
> >
> > IP address -> entered correctly
> > netmask -> 255.255.255.0
> > network -> 169.237.204.0
> > broadcast -> 169.237.204.255
> >
> > after startup, I activate the eth0 device and try to connect.  I get an
> > unknown hosts error message.  The error message suggests that I may have to
> > set the $SOCKS_NS environment variable to point tot he appropriate name
> > server.
> >
> > Any suggestions?  Thanks very much.

Welcome Eric. Here are some general suggestions to help you to get help:

* Add a descriptive subject to your message
* Copy and paste error messages exactly as they appear into your e-mail.

More specifically, we need the output of 'ifconfig', 'route -n', ifconfig
eth0', and the contents of /etc/resolv.conf to diagnose the problem.

-- 
Henry House
The attached file is a digital signature. See 
for information.  My OpenPGP key: .



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RE: [vox-tech] newbie

[Kevin Dawson]

Hi Eric,

Thank you for the useful suggestions. With the comment that 'the machine
can talk to itself via SAMBA' I meant that smbdclient -L myhostname
lists the available SAMBA services. The crossover cable will probably
fix the issue.

Thank you and everyone else for the useful advice,

Kevin

-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED]] On Behalf Of Eric Engelhard
Sent: Saturday, January 12, 2002 6:29 PM
To: [EMAIL PROTECTED]
Subject: Re: [vox-tech] newbie

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[vox-tech] Matlab question

[Kevin Dawson]

Hi,

Do you know how to parse Matlab data by Perl or C? If I save a matrix
from Matlab, it's anything but text. Matlab (Linux student version)
doesn't offer an export option in other formats than (.mat).

Thank you for your help,
Kevin

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Re: [vox-tech] dumb perl question

[Jeff Newmiller]

On Sat, 12 Jan 2002, Peter Jay Salzman wrote:

> 
> i know i should know this by now...
>
> how does one get assignments out of a backreference from a regex match?

By evaluating the match in a list context.  See "man perlop" under "Regexp
Quote-Like Operators".

Try:

   print join( ":", "100.extra" =~ /(\d+)\.(.*)/), "\n";

What you do with the resulting list is up to you, and if you only put one
pair of parentheses in the match, your list will only include one item.
When you join the list into a scalar, it will "concatenate" all "one" 
of the list items together, so

  $_ = "100.extra";

  $num = join '', /(\d+)/;

pulls the first sequence of one or more digits out of the string and puts
it into $num.

As far as I know, creating a list context means the left hand side of the
assignment must be a list, or you have to call a function that expects a
list (such as join).

[...]

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Re: [vox-tech] newbie

[Ryan]

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On Saturday, January 12 2002 05:06 pm, Peter Jay Salzman wrote:
> kevin, is this a crossover cable?  my understanding is that if you
> connect two NICs together, one (some?  all?) of the lines need to cross
> over to a different position.

The orange and green pairs need to be swapped on one end

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Re: [vox-tech] newbie

[ME]

On Thu, 10 Jan 2002, Kevin Dawson wrote:
> The acute issue is how to connect a Windows 98 laptop to the LINUX box.
> Today, I installed Redhat 7.1 and SAMBA. Consequently, the LINUX machine
> can talk to itself via SAMBA but the Windows laptop doesn't see it
> through the network (network == a patch-cable connecting the two NICs).
> Any help is appreciated.

>From the windows machine can you ping the IP address of the linux box?
>From the linux box can you ping the IP addres of the windows box?

then

Can you http, telnet or ssh from the windows box to the linux box

If you can do the above then we can examine confiuguration of Samba and
Linux and the windows machine.

-ME

-BEGIN GEEK CODE BLOCK-
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GCS/CM$/IT$/LS$/S/O$ !d--(++) !s !a+++(-) C++$() U$(+$) P+$>+++ 
L+++$(++) E W+++$(+) N+ o K w+$>++>+++ O-@ M+$ V-$>- !PS !PE Y+ !PGP
t@-(++) 5+@ X@ R- tv- b++ DI+++ D+ G--@ e+>++> h(++)>+ r*>? z?
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Re: [vox-tech] newbie

[Eric Engelhard]

Kevin Dawson wrote:
> 
> Hi,
> 
> I'm completely new to the realm of LINUX and to your discussion group.
> I'm a UC Davis grad student trying to put a bioinformatics workstation
> to work at home. Any idea, how I can get some help with
> installation-related questions?
> 
> The acute issue is how to connect a Windows 98 laptop to the LINUX box.
> Today, I installed Redhat 7.1 and SAMBA. Consequently, the LINUX machine
> can talk to itself via SAMBA but the Windows laptop doesn't see it
> through the network (network == a patch-cable connecting the two NICs).
> Any help is appreciated.

Hi Kevin,

OK, by saying that "the LINUX machine can talk to itself via SAMBA" do
you mean that your linux samba service is up and you can access files
with smbclient and the "service smb status" command returns good smb and
nmbd news? If so, then great. If you are not using a hub, then you need
a crossover cable. Heron's on E Street sells crossover cables and little
crossover converters (dual R45 jacks with the crossover internal).

--
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Re: [vox-tech] newbie

[ME]

> On Sat, 12 Jan 2002, Peter Jay Salzman wrote:
> > kevin, is this a crossover cable?  my understanding is that if you
> > connect two NICs together, one (some?  all?) of the lines need to cross over
> > to a different position.

On Sat, 12 Jan 2002, Gabriel Rosa wrote:
> my understanding is that the two signal pairs need to reverse, so they match
> up with the right pins on the other side. This is called a crossover cable.
> 
> Most patch cables, as labeled by fry's/etc, are straight through connections.
> 
> My advice would be to buy a cheap hub and make your life easier, since
> the hub will take regular cabling, and give you lots of blinking leds
> to tell you what's going on :)

If you really want to make your own:
http://mike.passwall.com/class/public/ethernet/10T.txt

1 and 3, 2 and 6. Why are 4 and 5 skipped? analog phones use center pairs,
and this allows for those to be used (backwards compatability thing with
rj45)

I second the suggestion for a hub. Useful for company who may bring 
their laptops over, and if IP MASQ uis setup, you can all geek out on the
internet. If you decide to go with a 10/100 hub, then why not pay the
extra ~$100 and get a Wireless Accesspoint with 10/100 ports too, and you
can roam in house with WEP and stuff. :-)

When you consider hubs, getting one with an uplink port is a good idea for
later expansion. (The uplink port logically does the same as a patch cable
and switches the Tx and Rx lines to allow you to connect  hub to a hub.)

-ME


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Re: [vox-tech] newbie

[Gabriel Rosa]

On Sat, 12 Jan 2002, Peter Jay Salzman wrote:

> kevin, is this a crossover cable?  my understanding is that if you
> connect two NICs together, one (some?  all?) of the lines need to cross over
> to a different position.

my understanding is that the two signal pairs need to reverse, so they match
up with the right pins on the other side. This is called a crossover cable.

Most patch cables, as labeled by fry's/etc, are straight through connections.

My advice would be to buy a cheap hub and make your life easier, since the hub
will take regular cabling, and give you lots of blinking leds to tell you
what's going on :)

-Gabe

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Re: [vox-tech] newbie

[Peter Jay Salzman]

begin Kevin Dawson <[EMAIL PROTECTED]> 
> Hi,
> 
> I'm completely new to the realm of LINUX and to your discussion group.
> I'm a UC Davis grad student trying to put a bioinformatics workstation
> to work at home. Any idea, how I can get some help with
> installation-related questions?
> 
> The acute issue is how to connect a Windows 98 laptop to the LINUX box.

that's certainly a cute issue!   :-)

> Today, I installed Redhat 7.1 and SAMBA. Consequently, the LINUX machine
> can talk to itself via SAMBA

what do you mean by "talk to itself"?  it doesn't need samba to talk to
itself.

> but the Windows laptop doesn't see it
> through the network (network == a patch-cable connecting the two NICs).
> Any help is appreciated.
 
kevin, is this a crossover cable?  my understanding is that if you
connect two NICs together, one (some?  all?) of the lines need to cross over
to a different position.

pete

-- 
The mathematics [of physics] has become ever more abstract, rather than more
complicated.  The mind of God appears to be abstract but not complicated.
He also appears to like group theory.  --  Tony Zee's `Fearful Symmetry'

PGP Fingerprint: B9F1 6CF3 47C4 7CD8 D33E  70A9 A3B9 1945 67EA 951D
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[vox-tech] newbie

[Kevin Dawson]

Hi,

I'm completely new to the realm of LINUX and to your discussion group.
I'm a UC Davis grad student trying to put a bioinformatics workstation
to work at home. Any idea, how I can get some help with
installation-related questions?

The acute issue is how to connect a Windows 98 laptop to the LINUX box.
Today, I installed Redhat 7.1 and SAMBA. Consequently, the LINUX machine
can talk to itself via SAMBA but the Windows laptop doesn't see it
through the network (network == a patch-cable connecting the two NICs).
Any help is appreciated.

Thank you,
Kevin

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Re: [vox-tech] dumb perl question

[Jim Angstadt]

--- Peter Jay Salzman <[EMAIL PROTECTED]> wrote:
> the string that i'm matching though is $_, not
> $temperature.  $_ holds a
> filename, like "100.energy", and i'd like to extract
> the "100" from the
> filename and put it in $temperature.
> 
> doesn't
> 
>   $temperature =~ s/(\d+).*/$1/;
> 
> assume that $temperature is the object holding
> "100.energy"?

Yes it does.

> 
> note that i'm being greedy here -- this DOES work:
> 
>   /(\d+).*/;  # match "100" in $_
>   $temperature = $+;  # put it in $temperature
> 
> i just want to do it in a single line.  :)   also,
> i'd like to do it
> without destroying the contents of $_ if possible.

Then your approach is the only way I know.  But, you
may want to take care of 'no match' cases.  $+ is the
last match.  If your match fails, then a prior match
will be picked up, *I think*.  (Not tested.)

One other point. the '.' is a metacharacter that
matches anything except a newline character.  So .*
matches the rest of the line.  It you want to match a
'.' then escape it:

# -
use strict;
$_ = '100.energy';

/^(\d*)\./;
print "temp: $1\n";
# -

Good luck.
Jim



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Re: [vox-tech] dumb perl question

[Jay Strauss]

You could do:

#!/usr/bin/perl -w

$_ = "200.energy";

(my $temp = $_) =~ s/(\d+).*/$1/;

print $temp,"\n";

I'm sure everyone will come up with a different solution. TIMTOWTDI

- Original Message -
From: "Peter Jay Salzman" <[EMAIL PROTECTED]>
To: <[EMAIL PROTECTED]>
Sent: Saturday, January 12, 2002 6:00 PM
Subject: Re: [vox-tech] dumb perl question


> hi jim,
>
> thanks for helping me out!
>
> the string that i'm matching though is $_, not $temperature.  $_ holds a
> filename, like "100.energy", and i'd like to extract the "100" from the
> filename and put it in $temperature.
>
> doesn't
>
> $temperature =~ s/(\d+).*/$1/;
>
> assume that $temperature is the object holding "100.energy"?
>
> note that i'm being greedy here -- this DOES work:
>
> /(\d+).*/;  # match "100" in $_
> $temperature = $+;  # put it in $temperature
>
> i just want to do it in a single line.  :)   also, i'd like to do it
> without destroying the contents of $_ if possible.
>
> pete
>
>
> begin Jim Angstadt <[EMAIL PROTECTED]>
> > --- Peter Jay Salzman <[EMAIL PROTECTED]> wrote:
> > 
> > > /(\d+).*/;
> > > $temperature = $+;
> >
> > $1 holds the \d+ matching, because it has parens.
> > Multiple sets of parens will match $1, $2, ... based
> > on the left to right order of the parens.
> >
> > If $temperature already had one or more digits \d+ and
> > some other junk, replace digits and junk with digits:
> >
> > $temperature =~ s/(\d+).*/$1/;
> >
> > Note, if $temperature has a newline character in the
> > middle somewhere, then .* will not match it.
> >
> > ---
> > Jim
> >
> > __
> > Do You Yahoo!?
> > Send FREE video emails in Yahoo! Mail!
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>
> --
> The mathematics [of physics] has become ever more abstract, rather than
more
> complicated.  The mind of God appears to be abstract but not complicated.
> He also appears to like group theory.  --  Tony Zee's `Fearful Symmetry'
>
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Re: [vox-tech] dumb perl question

[Peter Jay Salzman]

hi jim,

thanks for helping me out!  

the string that i'm matching though is $_, not $temperature.  $_ holds a
filename, like "100.energy", and i'd like to extract the "100" from the
filename and put it in $temperature.

doesn't

$temperature =~ s/(\d+).*/$1/;

assume that $temperature is the object holding "100.energy"?

note that i'm being greedy here -- this DOES work:

/(\d+).*/;  # match "100" in $_
$temperature = $+;  # put it in $temperature

i just want to do it in a single line.  :)   also, i'd like to do it
without destroying the contents of $_ if possible.

pete


begin Jim Angstadt <[EMAIL PROTECTED]> 
> --- Peter Jay Salzman <[EMAIL PROTECTED]> wrote:
> 
> > /(\d+).*/;
> > $temperature = $+;
> 
> $1 holds the \d+ matching, because it has parens. 
> Multiple sets of parens will match $1, $2, ... based
> on the left to right order of the parens.
> 
> If $temperature already had one or more digits \d+ and
> some other junk, replace digits and junk with digits:
> 
> $temperature =~ s/(\d+).*/$1/; 
> 
> Note, if $temperature has a newline character in the
> middle somewhere, then .* will not match it.
> 
> ---
> Jim
> 
> __
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-- 
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complicated.  The mind of God appears to be abstract but not complicated.
He also appears to like group theory.  --  Tony Zee's `Fearful Symmetry'

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Re: [vox-tech] dumb perl question

[Jim Angstadt]

--- Peter Jay Salzman <[EMAIL PROTECTED]> wrote:

>   /(\d+).*/;
>   $temperature = $+;

$1 holds the \d+ matching, because it has parens. 
Multiple sets of parens will match $1, $2, ... based
on the left to right order of the parens.

If $temperature already had one or more digits \d+ and
some other junk, replace digits and junk with digits:

$temperature =~ s/(\d+).*/$1/; 

Note, if $temperature has a newline character in the
middle somewhere, then .* will not match it.

---
Jim

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[vox-tech] dumb perl question

[Peter Jay Salzman]

i know i should know this by now...

how does one get assignments out of a backreference from a regex match?

in other words, can statements like this

`wc -l $file` =~ m/\s*(\d+) .*/g;
$NumberOfPoints = $+;

or this:

/(\d+).*/;
$temperature = $+;

be condensed into single line statements?  when i do something like:

$temperature = /(\d+).*/;

the /(\d+).*/ produces a "1".  i imagine that simply means "yes, i was
able to match the regex".

pete

-- 
The mathematics [of physics] has become ever more abstract, rather than more
complicated.  The mind of God appears to be abstract but not complicated.
He also appears to like group theory.  --  Tony Zee's `Fearful Symmetry'

PGP Fingerprint: B9F1 6CF3 47C4 7CD8 D33E  70A9 A3B9 1945 67EA 951D
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Re: [vox-tech] (no subject)

[Ryan]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

What is that `winmail.dat` attachment?

On Saturday, January 12 2002 12:21 pm, Eric C Moloy wrote:
> Hello.  I am getting started with Red Hat 7.1 for the first time, and I am
> having trouble connecting to the web.  The eth0 device fails to inititalize
> at startup.  The following settings appear for the eth0 device:
>
> IP address -> entered correctly
> netmask -> 255.255.255.0
> network -> 169.237.204.0
> broadcast -> 169.237.204.255
>
> after startup, I activate the eth0 device and try to connect.  I get an
> unknown hosts error message.  The error message suggests that I may have to
> set the $SOCKS_NS environment variable to point tot he appropriate name
> server.
>
> Any suggestions?  Thanks very much.
>
> Regards - ECM

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If you are using a Microsoft product to view it, BEWARE! - I'm not
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It is also on the servers: Key ID 0x72177BC7
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Re: [vox-tech] (no subject)

[ME]

As root from a command shell, can you do the following and report the
results?
# ifconifg
# ifconfig eth0
(Are the above the same when looking for eth0?)
(If eth0 is reported in both, that is a good sign.)
(If eth0 is only reported when you explicitly include "ifconfig eth0" that
means something else.)

If eth0 is listed in both of the above results, can you show us what:
# route -N
reports?

If that has entries, could you tell us what this shows:
# cat /etc/resolv.conf

Thanks,
-ME
-BEGIN GEEK CODE BLOCK-
Version: 3.12
GCS/CM$/IT$/LS$/S/O$ !d--(++) !s !a+++(-) C++$() U$(+$) P+$>+++ 
L+++$(++) E W+++$(+) N+ o K w+$>++>+++ O-@ M+$ V-$>- !PS !PE Y+ !PGP
t@-(++) 5+@ X@ R- tv- b++ DI+++ D+ G--@ e+>++> h(++)>+ r*>? z?
--END GEEK CODE BLOCK--
decode: http://www.ebb.org/ungeek/ about: http://www.geekcode.com/geek.html

On Sat, 12 Jan 2002, Eric C Moloy wrote:
> Hello.  I am getting started with Red Hat 7.1 for the first time, and I am
> having trouble connecting to the web.  The eth0 device fails to inititalize
> at startup.  The following settings appear for the eth0 device:
>   
> IP address -> entered correctly
> netmask -> 255.255.255.0
> network -> 169.237.204.0
> broadcast -> 169.237.204.255
>   
> after startup, I activate the eth0 device and try to connect.  I get an
> unknown hosts error message.  The error message suggests that I may have to
> set the $SOCKS_NS environment variable to point tot he appropriate name
> server.  
>
> Any suggestions?  Thanks very much.

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[Eric C Moloy]

Hello.  I am getting started with Red Hat 7.1 for the first time, and I am
having trouble connecting to the web.  The eth0 device fails to inititalize
at startup.  The following settings appear for the eth0 device:
  
IP address -> entered correctly
netmask -> 255.255.255.0
network -> 169.237.204.0
broadcast -> 169.237.204.255
  
after startup, I activate the eth0 device and try to connect.  I get an
unknown hosts error message.  The error message suggests that I may have to
set the $SOCKS_NS environment variable to point tot he appropriate name
server.  
   
Any suggestions?  Thanks very much.
   
Regards - ECM
   

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