Re: [vox-tech] Ubuntu sound card issues on KDS laptop

2007-01-17 Thread Eric Engelhard
On Tue, Jan 16, 2007 at 12:11:07PM -0800, Harold Lee wrote:
 Eric Engelhard wrote:
[of sound card issues on a laptop with unknown hardware specs]

 Knowing the sound card model is more interesting than the laptop model, 
 try lspci -v and look for sound card info. e.g.
[snip]

The output of lspci -v is:
:00:08.0 Multimedia audio controller: ALi Corporation M5451 PCI AC-Link
Controller Audio Device (rev 01)
Subsystem: Unknown device 168f:0001
Flags: medium devsel, IRQ 10
I/O ports at 1000 [size=256]
Memory at ee801000 (32-bit, non-prefetchable)
[size=4K]
Capabilities: available only to root

The ALSA site identifies the driver for this sound card as snd-ali5451.

Using the aadebug script from http://alsa.opensrc.org/Aadebug, I get the
following output:

ALSA Audio Debug v0.1.0 - Tue Jan 16 21:39:59 PST 2007
http://alsa.opensrc.org/index.php?page=aadebug
http://www.gnu.org/licenses/gpl.txt

Kernel 
Linux rachel-laptop 2.6.15-27-386 #1 PREEMPT Fri Dec 8 17:51:56 UTC 2006 i686
GNU/Linux

Loaded Modules 
snd_ali545124460  0
snd_ac97_codec 93216  1 snd_ali5451
snd_ac97_bus2304  1 snd_ac97_codec
snd_pcm_oss53664  0
snd_mixer_oss  18688  1 snd_pcm_oss
snd_pcm89864  3 snd_ali5451,snd_ac97_codec,snd_pcm_oss
snd_timer  25220  1 snd_pcm
snd55268  6
snd_ali5451,snd_ac97_codec,snd_pcm_oss,snd_mixer_oss,snd_pcm,snd_timer
snd_page_alloc 10632  1 snd_pcm

Modprobe Conf -
Warning: module config file does not exist
This means any kernel modules will not be auto loaded
See your linux distro docs on how to create this file

Proc Asound ---
Advanced Linux Sound Architecture Driver Version 1.0.10rc3 (Mon Nov 07
13:30:21 2005 UTC).
--- no soundcards ---
 33:   : timer

 Dev Snd ---
 timer

CPU ---
model name  : Pentium III (Coppermine)
cpu MHz : 996.364

RAM ---
MemTotal:   508192 kB
SwapTotal:  827308 kB

Hardware --
:00:00.0 Host bridge: ALi Corporation M1621 (rev 01)
:00:08.0 Multimedia audio controller: ALi Corporation M5451 PCI AC-Link
Controller Audio Device (rev 01)

The modprobe conf issue may not be significant, because I get the very same
output from a laptop running the same distro (ubuntu 6.06) but having a
functional soundcard.

It appears that the correct driver is installed as a module, but that the card
is not being detected. Am I interpreting this correctly? If so, how would I
resolve a detection issue?

Eric
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[vox-tech] Ubuntu sound card issues on KDS laptop

2007-01-16 Thread Eric Engelhard
One of my neighbors purchased a used KDS Valiant 671XH laptop for his
daughter. The machine was running Windows XP, but was crippled with viruses
and malware. I turned six people on to Ubuntu Linux in the last year and have
had no issues on three laptops and three workstations. Unfortunately, this
install (Ubuntu 6.06) had trouble with the sound card. Even worse, the
original OS was so crippled that I did not even bother to check out the
hardware specifications (I know, I know...). Bitten by overconfidence.

I tried looking on linux-on-laptops.com and tux-mobil.org, but there are no
references to this model. I also tried kdscomputers.com, but it appears that
they have gone out of business. The ALSA site also has no specific references
to this model.

Is anyone familiar with this model or have sufficient ALSA/sound card
experience to offer a suggestion?

Many thanks,

Eric Engelhard
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Re: [vox-tech] Ubuntu sound card issues on KDS laptop

2007-01-16 Thread Eric Engelhard
On Tue, Jan 16, 2007 at 12:11:07PM -0800, Harold Lee wrote:
 Eric Engelhard wrote:
[snip]
 Knowing the sound card model is more interesting than the laptop model, 
 try lspci -v and look for sound card info. e.g.
 
 00:1f.5 Multimedia audio controller: Intel Corporation 82801DB/DBL/DBM 
 (ICH4/ICH4-L/ICH4-M) AC'97 Audio Controller (rev 01)
Subsystem: IBM: Unknown device 0537
Flags: bus master, medium devsel, latency 0, IRQ 11
I/O ports at 1c00 [size=256]
I/O ports at 18c0 [size=64]
Memory at cc00 (32-bit, non-prefetchable) [size=512]
Memory at c800 (32-bit, non-prefetchable) [size=256]
Capabilities: available only to root
 
 Then you can go Googling for Linux support for that chipset.

Thanks, Harold. I'll try that this evening.
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Re: [vox-tech] postfix mailman

2006-10-19 Thread Eric Engelhard
Hi Wade,

Did you run the newlalias command after you editted /etc/aliases?

Is it possible that there is another entomologist on this list? :)

Eric

On Thu, Oct 19, 2006 at 05:15:31PM -0700, Wade Pinkston wrote:
 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA1
 
 Hello,
 
 I'm new to the list and apparently a week late but I am in desperate
 need of help with my mail/mailman server.
 
 I'm not sure where the problem lies but first off I cant get post fix to
 send mail from the correct virtual domain.
 
 The server has a domain name of
 
 extent0006.entomology.ohio-state.edu
 and a virtual name of
 bugs.osu.edu
 
 I want all the mail to appear to be from [EMAIL PROTECTED] not
 extent00 (for obvious reasons)
 
 
 secondly when ever I create a mailing list in mail man and try to send
 mail to it I get this:
 
 data format error. Command output: : Mailbox does not exist
 
 Google insists this is an aliasing issue and I can believe it but I can
 see that the lists are listed in /etc/mailman/aliases
 
 but along with that postfix doesn't seem to be paying any attention to
 /etc/aliases since I'm not getting any root email sent to my aliased
 address.
 
 I understand that this is confusing and I would be more then willing to
 share any config or files.
 
 -BEGIN PGP SIGNATURE-
 Version: GnuPG v1.2.6 (GNU/Linux)
 Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org
 
 iD8DBQFFOBUjv+6+qSFv3TURAuEjAKCOfv4ymgiGsIrZfSkKqtL4vIvyeACgw++x
 dqtOiNM/n/gGjnQPbLCl9pY=
 =KtaY
 -END PGP SIGNATURE-
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Re: [vox-tech] spam current events

2006-08-31 Thread Eric Engelhard
These have been slipping by my bogofilter, too. I was reading up on spamcop
when I got your message. Are you using spamcop now?

Eric

On Thu, Aug 31, 2006 at 04:51:26PM -0400, Peter Jay Salzman wrote:
 i'm getting hammered with email containing text designed to trick bayesian
 filters.  unfortunately, it appears to be quite successful in that endeavor.
 the email text is nonsensical, however the email has a gif image attachment.
 
 at first, the gif was always named image001.gif, and i was able to REJECT
 such emails when Postfix detected a gif attachment named image001.gif.
 but whoever is sending this got smarter and now the gif file is named all
 kinds of things.
 
 i'm not quite sure how to filter these things anymore other than to REJECT
 all gif attachments, which I'd prefer not to do if i can help it..
 
 the gif image itself is mostly white with a few colored threads here and
 there.  i certainly don't see any text, so i'm not quite sure what their
 purpose is.  perhaps it's some kind of virus?
 
 anyone else seeing these things?  i'm getting them a few times a day now.
 
 pete
 
 
 -- 
 The Buddha, the Godhead, resides quite as comfortably in the circuits of a
 digital computer or the gears of a cycle transmission as he does at the
 top of a mountain or in the petals of a flower.  To think otherwise is to
 demean the Buddha, which is to demean oneself.   -- Robert M. Pirsig
 
 Peter Jay Salzman, email: [EMAIL PROTECTED] web: http://www.dirac.org/p
 PGP Fingerprint: B9F1 6CF3 47C4 7CD8 D33E  70A9 A3B9 1945 67EA 951D
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Re: [vox-tech] beowulf cluster

2003-01-06 Thread Eric Engelhard
On Mon, Jan 06, 2003 at 02:48:38PM -0800, Ryan Detert wrote:
 
 I am looking for a good howto or a really clear book on setting up a 
 beowulf cluster. I have 3 computers and I am wondering first off if it 
 would be easier to use NFS or having each node have a completely 
 functional OS.

You do not need to worry about most infrastructure issues with only three
boxes. I like ROCKS (http://www.rocksclusters.org/rocks-documentation/2.3/),
which admittedly, is overkill for my little cluster running embarrassingly
parallel instances of NCI BLAST and megaBLAST.

Eric
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Re: [vox-tech] beowulf cluster

2003-01-06 Thread Eric Engelhard
On Mon, Jan 06, 2003 at 03:08:25PM -0800, Peter Jay Salzman wrote:
 begin Ryan Detert [EMAIL PROTECTED] 
  
  I am looking for a good howto or a really clear book on setting up a 
  beowulf cluster.
 
 there's a beowulf howto, but it looks abandoned.  the copy i have was
 last updated in 1998.   there's a book on beowulf clusters in the lugod
 library, and it was good at the basics, but not very detailed when it
 comes to actually setting one up.

Please avoid the software that came with the O'Reilly Beowulf book. Heck,
avoid the whole book. Even they want to distance themselves from it:

http://www.oreillynet.com/search/?sp-q=clustersp-k=bookssearch=search

Eric
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Re: [vox-tech] sendmail configuation question

2002-10-24 Thread Eric Engelhard
On Thu, Oct 24, 2002 at 01:38:41PM -0700, Samuel Merritt wrote:
 
 Check that the server is listening on the wildcard address. Look at the
 output of netstat --inet -l. If you see an entry in the Local Address
 column like localhost.localdomain:smtp, then sendmail is only
 listening on the loopback interface, not to the network. 

Bingo!

 
 If this is the case, look in /etc/sendmail.mc
 (could be /etc/mail/sendmail.mc on RedHat), and there will probably be
 something like DAEMON_OPTIONS('Port=smtp,Addr=127.0.0.1'). Comment this
 out, rebuild /etc/sendmail.cf, and restart sendmail. 

Thanks Samuel, you just saved me a lot of work. I'll also bookmark those
docs.

Eric

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Re: [vox-tech] php install issue

2002-07-07 Thread Eric Engelhard

Rod Roark wrote:

 I'd love to see what you come up with.  BTW have you looked
 at PHP's GD-based image drawing support yet?

I've decided to speak about php/MING at the next CVBIG meeting (next
Monday before LUGOD). I also looked at the GD functions. Very cool,
thanks!
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Re: [vox-tech] php install issue

2002-07-06 Thread Eric Engelhard

Rod Roark wrote:
 
 --with-pgsql should point to the base install directory for
 postgres, not to any particular /lib or /include.  So you
 might try --with-pgsql=/usr, and if the includes are still
 not found then you can try something like
 --with-extra-includes=/usr/include/pgsql.
 
 Do ./configure --help to see what the choices are.
 
 Hope this helps.

Thanks Rod, but the problem turned out to be a bad symbolic link (ghost
of rpms past). I rpm -e'd again and then rm -r the old directories. The
next problem was really odd, but turned out to be a known bug. One has
to manually add a libs directory to the php build directory prior to
make install, some problem between php-4.2.0 and php-4.2.1 (see
http://news.php.net/article.php?group=php.bugsarticle=9116).

I now have have MING on my box at home and tested with some sample
scripts from http://www.neuralust.com/%7Emingdocs/.

For those interested, I'm trying php/MING as a graphical environment for
displaying genomic information.

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Re: [vox-tech] reading a .gz .Z after offset

2002-03-07 Thread Eric Engelhard

Mark K. Kim wrote:
 
 On Thu, 7 Mar 2002, Jeff Newmiller wrote:
 
  I don't think you can do seeks in a compressed file... you have to read it
  sequentially.
 
  If you have a plan for dividing up the uncompressed data, perhaps you
  should do that first and store the split data as separate files
  (recompressed or not) for purposes of computation.
 
 The zlib library offers a seek function in its utility function API,
 gzseek(gzFile, z_off_t, int).  Since the zlib compression uses the
 deflation algorithm that compresses data in blocks of a known size, it can
 find the block you're seeking, inflate just that block, and return the
 data (I'm not sure if that's how gzseek works, but I'm just sain' it can
 be done.)  I'm sure in all PERL's ingenuity, it can be done in PERL, too.
 
 Go Eric!  Keep looking! :)

Thanks Mark. I was poking around with zlib when I got a letter from the
biocluster list saying that NCBI released an unintentional solution in
December. I can now quickly create indexed volumes of specified sizes on
the fly and on a single box.

... but I'm still going to learn something about compression. :-)

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Re: [vox-tech] reading files into a web page (long scripts)

2002-02-02 Thread Eric Engelhard

Peter Jay Salzman wrote:
[snip]
 how can i do this?  i *think* php can do this, but i don't know a lick
 of php.  can someone give me explicit instructions on how to do this
 sort of thing?
 
 if it makes a difference, i'm putting a form on the same page that adds
 text to /www/pcgm/bulletins.

Hi Pete,

I like to place content in a postgres database as a binary large objects
(blobs). http://www.cvbig.org/others/ is a an example of multiple blob
calls for both layout and content.

?PHP
echo htmlbodytitleCVBIG | Other SIGs/title;
$conn = pg_connect(dbname=cvbig port=5432);

#header from db
pg_Exec($conn, BEGIN);
$oid_result = pg_Exec($conn, SELECT header FROM layout);
$oid = pg_Result($oid_result, 0, header);
$handle = pg_loopen($conn, $oid, r);
$text = pg_loread($handle, 10);
$text = preg_replace(/\\\/,, $text);
echo $text;
pg_Exec($conn, COMMIT);
 
#grab sig list from local_sigs and display
$result = pg_Exec($conn, SELECT * FROM local_sigs ORDER BY
NAME);
$num_rows = pg_numrows($result);
echo PbWe are not alone!/b/ppHere are some local
interest groups worth visiting./pp;
while ($i$num_rows){
$group = pg_Result($result, $i, name);
$link = pg_Result($result, $i, link);
$description = pg_Result($result, $i, description);
echo pa href=$link$group/a:br$description/p;
$i++;
}
 
 
#footer from db
pg_Exec($conn, BEGIN);
$oid_result = pg_Exec($conn, SELECT footer FROM layout);
$oid = pg_Result($oid_result, 0, footer);
$handle = pg_loopen($conn, $oid, r);
$text = pg_loread($handle, 10);
$text = preg_replace(/\\\/,, $text);
echo $text;
pg_Exec($conn, COMMIT);
 
echo /body/html;
?

I have another page to add, edit, or delete content. This can easily be
altered for a bulletin board.

html
titleAdmin: Local Sigs/title
body background=../Texture_lt_gray_004.jpg
H2Admin: Local Sigs/H2
?PHP
$current_date = date(m-d-Y);
echo User b.getenv(Remote_User)./b logged on from
.getenv(Remote_Addr). on .$current_date.
br;
$user_id = getenv(Remote_User);
$conn = pg_connect(dbname=cvbig port=5432);
function mylink(){echo a
href=http://www.cvbig.org/admin/Administration Page/a;}

if (!$SUBMIT  !$ADD  !$NEW_SUBMIT){
echo Edit any or all of the following fields or add a
new entry.brbr;
$query = pg_Exec($conn, SELECT * FROM local_sigs ORDER
BY name);
$num_rows = pg_numrows($query);
while ($i $num_rows){
$name = pg_Result($query, $i, 'name');
$link = pg_Result($query, $i, 'link');
$description = pg_Result($query, $i,
'description');
echo form enctype=multipart/form-data
action=local_sigs.php method=post;
echo input type=hidden name=OLDNAME
value=$name;
echo SIG:brTEXTAREA COLS=50 ROWS=1
NAME=NAME$name/textareabr;
echo Link:brTEXTAREA COLS=50 ROWS=1
NAME=LINK$link/textareabr;
echo Description:brTEXTAREA COLS=100 ROWS=5
WRAP=VIRTUAL NAME=DESCRIPTION$descrip
tion/textareabr;
echo input type=submit name=SUBMIT
value=submit-$name;
echo /form;
$i++;
}
echo form enctype=multipart/form-data
action=local_sigs.php method=post;
echo input type=submit name=ADD value=addbrbr;
echo /form;
mylink();
exit;
}
if (!$SUBMIT  $ADD){
echo form enctype=multipart/form-data
action=local_sigs.php method=post;
echo SIG:brTEXTAREA COLS=50 ROWS=1
NAME=NAME/textareabr;
echo Link:brTEXTAREA COLS=50 ROWS=1
NAME=LINK/textareabr;
echo Description:brTEXTAREA COLS=100 ROWS=5
WRAP=VIRTUAL NAME=DESCRIPTION/textareabr
;
echo input type=submit name=NEW_SUBMIT value=submit;
echo /form;
mylink();
exit;
}

if ($SUBMIT){
 
#display new values
echo The database has been updated with the following
values:brbr;
$query = pg_Exec($conn, SELECT * FROM local_sigs WHERE
name = '$NAME');
$name = pg_Result($query, 0, 'name');
$link = pg_Result($query, 0, 'link');
$description = pg_Result($query, 0, 'description');
echo bName:/b $namebr;
echo bLink:/b $linkbr;
echo bDescription:/bbrTEXTAREA COLS=100 ROWS=5
WRAP=VIRTUAL NAME=DESCRIPTION$description/TEXTAREAbr;
mylink();
exit;
}
if 

[vox-tech] Postgres Oracle Compatibility - serial column type

2002-01-25 Thread Eric Engelhard

Keywords: postgres, oracle, RDBMS computability issues

I'm trying to anticipate scripting computability issues for Postgres and
Oracle. I have already migrated from Perl Pg to Perl DBI, but there are
also RDBMS function issues to consider. Does anyone know whether Oracle
has a data (column) type equivalent to Postgres SERIAL, or does one have
to create a sequence and use nextval()/currval()/setval()?

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Re: [vox-tech] Postgres Oracle Compatibility - serial column type

2002-01-25 Thread Eric Engelhard

Jay Strauss wrote:
 
 The later,
 
 But many times one will put a trigger (on insert) on the table to
 automatically set the value

Thanks Jay, I had a feeling that this one would come back to haunt me.
I'll just define a compatible subroutine for inserts which contains
nextval() within the select statement. I'll never remember it otherwise.
:-)
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Re: [vox-tech] phone supplies

2002-01-17 Thread Eric Engelhard

Peter Jay Salzman wrote:
 
 hi all,
 
 can someone recommend a store that sells a wide variety of phone
 jack mounting kits?[snip]

Graybar (www.graybar.com), but you need to know someone with a
wholesalers licence. They have a comprehensive selection. There is one
in Sacramento off of 80, Arden exit, I think.

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Re: [vox-tech] newbie

2002-01-12 Thread Eric Engelhard

Kevin Dawson wrote:
 
 Hi,
 
 I'm completely new to the realm of LINUX and to your discussion group.
 I'm a UC Davis grad student trying to put a bioinformatics workstation
 to work at home. Any idea, how I can get some help with
 installation-related questions?
 
 The acute issue is how to connect a Windows 98 laptop to the LINUX box.
 Today, I installed Redhat 7.1 and SAMBA. Consequently, the LINUX machine
 can talk to itself via SAMBA but the Windows laptop doesn't see it
 through the network (network == a patch-cable connecting the two NICs).
 Any help is appreciated.

Hi Kevin,

OK, by saying that the LINUX machine can talk to itself via SAMBA do
you mean that your linux samba service is up and you can access files
with smbclient and the service smb status command returns good smb and
nmbd news? If so, then great. If you are not using a hub, then you need
a crossover cable. Heron's on E Street sells crossover cables and little
crossover converters (dual R45 jacks with the crossover internal).

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[vox-tech] ftp server problem

2001-01-09 Thread Eric Engelhard

I've got an odd problem with my ftp server. I'm running wu-2.6.0(1) my
/etc/ftpaccess is below. The problem is that my collaborator can not
list files in /ftp, which they must to get their ftp client to function
(they are using the Apple client 'Interarchy'). I have no problem
listing files when I log in as an anonymous user locally, but when I go
through my SunOS account at UCB, I have to use ls -l to list files (ls
itself finds no files). Has anyone heard of ftp client-server
incompatibility with listing? Or am I missing the obvious?

class   all   real,guest  *
class anonftp anonymous *  
email [EMAIL PROTECTED] 

loginfails 5
  
readme  README*login
readme  README*cwd=*
  
message /welcome.msglogin
message .messagecwd=*

noretrieve .notar
noretrieve /home/ftp/incoming

upload /home/ftp * no  
upload /home/ftp /incoming yes ftp ftp 0440 nodirs
  
compressyes all
tar yes all
chmod   no  guest
delete  no  guest
overwrite   no  guest
rename  no  guest  
log transfers   anonymous,real  inbound,outbound

shutdown /etc/shutmsg
  
passwd-check rfc822 warn
chmod   yes real
delete  yes real
overwrite   yes real
rename  yes real

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