[Wien] structeditor

2014-11-26 Thread Lawal Mohammed
Dear Developers and Users;
I have some problems and I need your help.
(1) I am trying to make a replacement on interstitial sites of a given crystal 
system. But, it looks like the atomic ID in xcrysden doesn't represent the 
atomic index (ind) in the readme.txt of the structeditor. If I am right then, 
is there any package that can be used for that purpose?
 (2) How can I use vacuum in three directions using the structeditor?
Your help is highly welcome.
Regards
Lawal Mohammed___
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Re: [Wien] structeditor

2014-11-26 Thread Robert Laskowski
  (2) How can I use vacuum in three directions using the structeditor?

assuming you loaded your struct to variable s, you may do the following:

s.a=s.a*factor;
s.pos=s.pos/factor;
showstruct(s)
savestruct 

where the factor a number bigger then 1, vacume layer should be 
(factor-1)*s.a(1:3) in all three directions

regards

Robert




On 27 November 2014 AM 7:58:18 Peter Blaha wrote:
  (1) I am trying to make a replacement on interstitial sites of a given 
  crystal system. But, it looks like the atomic ID in xcrysden doesn't 
  represent the atomic index (ind)
  in the readme.txt of the structeditor. If I am right then, is there any 
  package that can be used for that purpose?

 Think about this problem: For FCC Cu, you have just ONE atom in the cell, but 
 of course,
 xcrysden displays the full cell, i.e. 8+6 atoms. So there are many atoms, 
 which would
 have the same ID, thus the concept if IDs is difficult to visualize, 
 because then you
 would just see  one single ball, which would not be helpful either.

 xcrysden allows to display the coordinates of the selected atom in 
 fractional coordinates
 and by this you can identify the atom in the structure.

  (2) How can I use vacuum in three directions using the structeditor?

 I don't know how to do this and would need to study the help  myself.

 Instead:   x supercell can easily do it.

 And: Why would you like to do this ? It will be soon very expensive 
 Wien2k is NOT a molecular code and you should have good reasons to do this
 in exceptional cases.



--
==
Dr. Robert Laskowski

Senior Scientist, Materials Science  Engineering Department
Institute of High Performance Computing, A*STAR
1 Fusionopolis Way, #16-16, Connexis, Singapore 138632
Tel(Off): +65. 64191493 Fax: +65. 64632536
=



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