Re: [Wien] Need help ; Calculating effective mass with fold2Bloch

2016-01-21 Thread Oleg Rubel
Thanks for bringing this issue up. I made modifications to the MATLAB
script that plots the unfolded band structure. It contains now a variable
FOLDS = [1 2 3] that represents an arbitrary multiplicity selected when
constructing a supercell. The updated script is located at
https://github.com/rubel75/fold2Bloch/tree/master/Utils

I hope it will work for you.

Thank you
Oleg

On Wed, Jan 20, 2016 at 8:29 AM, Yongbeom Cho  wrote:

> Hi. Thanks for reading this.
>
> I want to calculate the effective mass from the band structure with
> fold2Bloch data.
>
> I used the parabolic approximation method to calculate effective mass.
>
> So, I need band structure which is proper to get effective mass (same
> ratio of the band width is required)
>
>
>
> Even though there is no problem to see energy band gap, I can't get the
> reasonable effective mass in my case.
>
> The band width ratio is quite weird. the ratio of the distance from gamma
> to X and the distance from gamma to L is not accurate.
>
>
>
> I used 2x2x3 structure and 3x3x2 structure.
>
> How can I plot 2x2x3 and 3x3x2 with the same ratio of 1x1x1 band structure
> with fold2Bloch and matlab?
>
> Does fold2Bloch include the solution for this case?
>
>
>
>
>
>
>
> Best regards,
>
> Yongbeom Cho.
>
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Re: [Wien] (no subject)

2016-01-21 Thread Peter Blaha
If the error is really caused by   gfortran  and not by an "user-error", 
you can fix it by:


cd $WIENROOT/SRC_mixer/
edit mixer.F and replace two "write(22" statements by "write(21". 
Then recompile:

make and
cp mixer ..

Peter Blaha

On 01/21/2016 12:49 PM, said chibani wrote:

So thank you but I don't understand this solution give me simple ou easy
solution  if you have another compiler like ifort please pass to me
because I have just gfortran it does not work

2016-01-21 7:42 GMT+01:00 Gavin Abo mailto:gs...@crimson.ua.edu>>:

I don't have a code fix.

However, my understanding from the information at the following
links is that gfortan was updated to follow the Fortran standard for
the EOF (end of file) marker starting with versions greater than
about 4.5, such that the WIEN2k code has to be adjusted so that it
does not generate that error message (which indicates that it caught
an invalid EOF operation):

[1] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=52860
[2] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=59513
[3]
http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg12287.html

It looks like the recommended solution given in the discussions at
those links was to use a backspace statement in the code. Whereas,
the less recommended solutions being to use a different compiler
like ifort [1] or possibly trying the compiler setting -std=legacy.

Code comments in gfortran.texi:

Some legacy codes rely on allowing @code{READ} or @code{WRITE} after the
EOF file marker in order to find the end of a file. GNU Fortran normally
rejects these codes with a run-time error message and suggests the user
consider @code{BACKSPACE} or @code{REWIND} to properly position
the file before the EOF marker.  As an extension, the run-time error may
be disabled using -std=legacy. [

https://gcc.gnu.org/viewcvs/gcc/trunk/gcc/fortran/gfortran.texi?view=markup&pathrev=221575
]

So a backspace statement before the write on line 1015 in
SRC_mixer/mixer.F (of WIEN2k 14.2)

BACKSPACE(2)
write(22,*)':WARNING: K-list has changed'

or perhaps somewhere before/after one or both of the read statements
(line 161 or 174 or 183) in SRC_mixer/scfana.f would probably fix
the problem.

On 1/20/2016 7:32 AM, said chibani wrote:

thank you for the solution  but there is another problem
when he optimize I lanch this point -10  -5  0  5  10  in
example Tic
  S.vns -> ./S_vol_-10.0_default.vns
S.vnsup -> ./S_vol_-10.0_default.vnsup
S.vnsdn -> ./S_vol_-10.0_default.vnsdn
S.r2v -> ./S_vol_-10.0_default.r2v
S.r2vdn -> ./S_vol_-10.0_default.r2vdn

broyden files deleted, clm*, dmat*, vorb*, vresp*, eece*, vsp*,
vns*, scf, struct and input files saved under ./S_vol_-10.0_default

running dstart in single mode
STOP DSTART ENDS
3.3u 0.0s 0:03.40 99.7% 0+0k 0+392io 0pf+0w
0.0u 0.0s 0:00.05 100.0% 0+0k 0+352io 0pf+0w
clmextrapol_lapw has generated a new S.clmsum
hup: Command not found.
STOP  LAPW0 END
STOP  LAPW1 END
STOP  LAPW2 END
STOP  CORE  END
At line 1015 of file mixer.F (unit = 22, file = 'S.scf')
Fortran runtime error: Sequential READ or WRITE not allowed
after EOF marker, possibly use REWIND or BACKSPACE

>   stop error
ERROR status in S_vol__-5.0

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[Wien] Fwd: SPSSM 2016 - July 1st-6th 2016, Nantes, France - Second announcement

2016-01-21 Thread Florent Boucher

Dear WIEN2k users,
please find below an annoucement for the SPSSM 2016 conference in Nantes in 
July.
Best regards
Florent


 Message transféré 
Sujet : SPSSM 2016 - July 1st-6th 2016, Nantes, France - Second 
announcement
Date :  Tue, 12 Jan 2016 17:10:08 +
De :SPSSM 2016 
Répondre à :SPSSM 2016 
Pour :  florent.bouc...@cnrs-imn.fr



The 6th International Symposium on Structure Property Relationships in Solid 
State Materials (SPSSM-2016) July 1st-6th 2016, Nantes, France

Second announcement

Nantes, January 12th, 2016

Dear colleagues, We are delighted to announce the forthcoming "Sixth International 
Symposium on Structure-Property Relationships in Solid State Materials (SPSSM-2016)" 
and invite you to apply to an oral presentation or a poster. This symposium will be held 
in Nantes (France) from Friday, July 1st to Wednesday, July 6th, 2016. All the 
information regarding this interdisciplinary conference can be found at the conference 
website: http://spssm2016.sciencesconf.org/

This is the sixth of the biennial symposium series (Bordeaux in 2006, Nantes in 
2008, Stuttgart in 2010, Bordeaux in 2012 and Qingdao in 2014), which aims at 
gathering junior and senior scientists from all continents. The goal of the 
symposium is to highlight the relationships between specific physical 
properties of the materials and their structure and/or chemical composition as 
well as how these properties may be modified by varying the nature of the 
chemical bonds, the strength of the electron-electron interaction, the 
concentration of dopants and defects, etc.

The meeting will be devoted mainly to structure-property relationships in 
magnetic, optical, electronic, and photocatalytic materials. Within the scope 
of this symposium, the planned sessions of the meeting include functional 
materials, photovoltaic and photocatalysis, defects, quantum materials and 
computational/theoretical analyses. This symposium is structured to provide 
opportunities for experimental and theoretical solid state chemists, physicists 
and materials scientists to share their knowledge and expertise. A tour is 
planned on Sunday, July 3rd to visit the nearby seacoast with stops at la 
Baule, Le Croisic and Guérande, which will provide a relaxed atmosphere for 
sightseeing and discussion.

Best regards,
On behalf of the Organizing Committee,
Dr. S. Jobic
 
Organizing Committee
 
Pr. Shuiquan Deng, FJIRSM, Fujian, China

Pr. Baibiao Huang, Shandong University, Jinan, China
Pr. Jürgen Köhler, MPI, Stuttgart, Germany
Dr. Antoine Villesuzanne, ICMCB, Bordeaux, France
Pr. Myung-Hwan Whangbo, NCSU, Raleigh, US
 
Local Committee
 
Richard Baschera

Dr. Florent Boucher
Dr. Laurent Cario
Dr. Romain Gautier
Josselin Gesrel
 
Important dates:
 
October 1st, 2015: Announcement, pre-registration

January 31st, 2016: Registration and abstract submission
March 1st, 2016: End of early registration
May 1st, 2016:Abstract submission deadline
May 15th, 2016:Notification of abstract acceptance
May 31st, 2016:Final program

List of confirmed invited speakers
 
Sylviana Botti, University of Jena, Germany

José Coutinho, University of Aveiro, Portugal
Richard Dronskowski, RWTH Aachen University, Germany
Jacky Even, INSA-Rennes, France
Claudia Felser, MPI Dresden, Germany
Amparo Fuertes, Institut de Ciència de Materials de Barcelona, Spain
Gregory Geneste, CEA, DAM, France
Xavier Gonze, Université Catholique de Louvain, Belgium
Julie Grollier, Thales CNRS, France
Mike Hayward, University of Oxford, UK
Khang Hoang, North Dakota state University, US
Philip Lightfoot, University of St Andrews, UK
Bettina Lotsch, MPI Stuttgart, Germany
Xavier Marie, INSA-Toulouse, France
Fabrice Odobel, Université de Nantes, France
Oliver Oeckler, Universität Leipzig, Germany
Silvia Picozzi, Consiglio Nazionale delle Ricerche, Italy
Hidenori Takagi, MPI Stuttgart, Germany
Roser Valenti, Goethe Universität, Germany
Ana Vedda, Università degli Studi di Milano, Italy
Antoine Villesuzanne, ICMCB, France
Peng Wang, Argonne National Laboratories, US
Kesong Yang, University of California, US

Please, see http://spssm2016.sciencesconf.org/
==




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Re: [Wien] (no subject)

2016-01-21 Thread Laurence Marks
What almost certainly happened is that there was an earlier error, before
the mixer. Do "cat *.error" to find out what failed.

---
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
http://www.numis.northwestern.edu
Corrosion in 4D http://MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
"Research is to see what everybody else has seen, and to think what nobody
else has thought"
Albert Szent-Gyorgi
On Jan 20, 2016 08:32, "said chibani"  wrote:

> thank you for the solution  but there is another problem
> when he optimize I lanch this point -10  -5  0  5  10  in example Tic
>  S.vns -> ./S_vol_-10.0_default.vns
>S.vnsup -> ./S_vol_-10.0_default.vnsup
>S.vnsdn -> ./S_vol_-10.0_default.vnsdn
>S.r2v -> ./S_vol_-10.0_default.r2v
>S.r2vdn -> ./S_vol_-10.0_default.r2vdn
>
> broyden files deleted, clm*, dmat*, vorb*, vresp*, eece*, vsp*, vns*, scf,
> struct and input files saved under ./S_vol_-10.0_default
>
> running dstart in single mode
> STOP DSTART ENDS
> 3.3u 0.0s 0:03.40 99.7% 0+0k 0+392io 0pf+0w
> 0.0u 0.0s 0:00.05 100.0% 0+0k 0+352io 0pf+0w
> clmextrapol_lapw has generated a new S.clmsum
> hup: Command not found.
> STOP  LAPW0 END
> STOP  LAPW1 END
> STOP  LAPW2 END
> STOP  CORE  END
> At line 1015 of file mixer.F (unit = 22, file = 'S.scf')
> Fortran runtime error: Sequential READ or WRITE not allowed after EOF
> marker, possibly use REWIND or BACKSPACE
>
> >   stop error
> ERROR status in S_vol__-5.0
>
>
> 2016-01-20 2:00 GMT+01:00 Gavin Abo :
>
>> The WIEN2k program needs the case directory and files in it (like
>> case.struct) to have the same name [
>> http://zeus.theochem.tuwien.ac.at/pipermail/wien/2007-May/009136.html ].
>>
>> In your post, it looks like you have the following.
>>
>> case directory: WIEN2k
>> file: GaAs.struct
>>
>> However, it needs to be:
>>
>> case directory: GaAs
>> file: GaAs.struct
>>
>> You also have to be careful, because Linux is case sensitive [
>> http://www.mail-archive.com/wien%40zeus.theochem.tuwien.ac.at/msg05727.html
>> ].
>>
>> On 1/19/2016 6:48 AM, said chibani wrote:
>>
>> Dear WIEN2K users I'm new in wien2k, when I tried the  the example of
>> GaAS, but it doesn't work
>>
>> :~/WIEN2k$ ./GaAs.struct
>> bash: ./GaAs.struct: Permission denied
>> said@said-S:~/WIEN2k$ x nn
>>  specify nn-bondlength factor: (usually=2) [and optionally dlimit, dstmax
>> (about 1.d-5, 20)]
>> 2
>> At line 123 of file nn.f (unit = 20, file = 'WIEN2k.struct')
>> Fortran runtime error: End of file
>> 0.0u 0.0s 0:01.89 0.0% 0+0k 0+0io 0pf+0w
>> error: command   /home/said/Documents/nn nn.def   failed
>> I could not solve this problem give me a solution at this problem
>>
>> 2015-12-23 12:08 GMT+01:00 said chibani :
>>
>>> - I am running wien2k version 14.2 on a  system  of type ubunto 12-04
>>> LTS
>>>
>>>  I'm a new user of WIEN2k. I installed WIEN2k in ubuntu 12.04
>>>
>>> I tried the TiC calculation, but it doesn't work.
>>> When I click the "x dstart" on the page of "initialize calculation"
>>> this is displayed.
>>> error: command   /home/said/WIEN2k/dstart dstart.def   failed
>>> Then I open "view TiC.outputd and cp TiC.in0_std TiC.in0",
>>> and there is
>>> System Error
>>> Can't read file //home/said/WIEN2k/TiC/TiC.outputd
>>> I could not solve this problem by myself. Please help me
>>>
>>
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>>
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Re: [Wien] (no subject)

2016-01-21 Thread said chibani
So thank you but I don't understand this solution give me simple ou easy
solution  if you have another compiler like ifort please pass to me because
I have just gfortran it does not work

2016-01-21 7:42 GMT+01:00 Gavin Abo :

> I don't have a code fix.
>
> However, my understanding from the information at the following links is
> that gfortan was updated to follow the Fortran standard for the EOF (end of
> file) marker starting with versions greater than about 4.5, such that the
> WIEN2k code has to be adjusted so that it does not generate that error
> message (which indicates that it caught an invalid EOF operation):
>
> [1] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=52860
> [2] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=59513
> [3]
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg12287.html
>
> It looks like the recommended solution given in the discussions at those
> links was to use a backspace statement in the code. Whereas, the less
> recommended solutions being to use a different compiler like ifort [1] or
> possibly trying the compiler setting -std=legacy.
>
> Code comments in gfortran.texi:
>
> Some legacy codes rely on allowing @code{READ} or @code{WRITE} after the
> EOF file marker in order to find the end of a file. GNU Fortran normally
> rejects these codes with a run-time error message and suggests the user
> consider @code{BACKSPACE} or @code{REWIND} to properly position
> the file before the EOF marker.  As an extension, the run-time error may
> be disabled using -std=legacy. [
> https://gcc.gnu.org/viewcvs/gcc/trunk/gcc/fortran/gfortran.texi?view=markup&pathrev=221575
> ]
>
> So a backspace statement before the write on line 1015 in
> SRC_mixer/mixer.F (of WIEN2k 14.2)
>
> BACKSPACE(2)
> write(22,*)':WARNING: K-list has changed'
>
> or perhaps somewhere before/after one or both of the read statements (line
> 161 or 174 or 183) in SRC_mixer/scfana.f would probably fix the problem.
>
> On 1/20/2016 7:32 AM, said chibani wrote:
>
>> thank you for the solution  but there is another problem
>> when he optimize I lanch this point -10  -5  0  5  10  in example Tic
>>  S.vns -> ./S_vol_-10.0_default.vns
>>S.vnsup -> ./S_vol_-10.0_default.vnsup
>>S.vnsdn -> ./S_vol_-10.0_default.vnsdn
>>S.r2v -> ./S_vol_-10.0_default.r2v
>>S.r2vdn -> ./S_vol_-10.0_default.r2vdn
>>
>> broyden files deleted, clm*, dmat*, vorb*, vresp*, eece*, vsp*, vns*,
>> scf, struct and input files saved under ./S_vol_-10.0_default
>>
>> running dstart in single mode
>> STOP DSTART ENDS
>> 3.3u 0.0s 0:03.40 99.7% 0+0k 0+392io 0pf+0w
>> 0.0u 0.0s 0:00.05 100.0% 0+0k 0+352io 0pf+0w
>> clmextrapol_lapw has generated a new S.clmsum
>> hup: Command not found.
>> STOP  LAPW0 END
>> STOP  LAPW1 END
>> STOP  LAPW2 END
>> STOP  CORE  END
>> At line 1015 of file mixer.F (unit = 22, file = 'S.scf')
>> Fortran runtime error: Sequential READ or WRITE not allowed after EOF
>> marker, possibly use REWIND or BACKSPACE
>>
>> >   stop error
>> ERROR status in S_vol__-5.0
>>
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Re: [Wien] the sequence of doing +U and SOC in a GGA+U+SOC calculation

2016-01-21 Thread Peter Blaha

In addition to what Fabien was saying:

If you are using 14.2 there was a fix for the off-diagonal 
matrix-elements and when doing  LDA+U AND spin-orbit, one should 
probably change


runsp -orb -so  to

runsp -orb -so -orbdu

This is a suggestion from Jan Kunes, personally I have no experience 
with it, but it may be of importance for certain cases.


Regards

On 01/21/2016 11:04 AM, t...@theochem.tuwien.ac.at wrote:

With solids containing open d-shell, it is usually possible
to stabilize several solutions corresponding to different
occupations of the d-orbitals.  Which solution one finds, may
depends on the electron density used at the beginning of the
SCF procedure. A good criteria is to choose the solution that
has the most negative total energy (:ENE in case.scf).

F. Tran

On Thu, 21 Jan 2016, Bin Shao wrote:


Dear all,
I need to do GGA+U+SOC calculation with 3d and 4/5d atoms. I found
that the
results with different sequence of doing +U and SOC were different,
i.e., if
you first do +U calculation and then +SOC, the result is different
from that
of first doing SOC and then +U. Shouldn't that be the same? What is the
right way to do GGA+U+SOC calculation?

Best,

Bin Shao





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Re: [Wien] need help

2016-01-21 Thread sikander Azam
Resp. Karel Vyborny
Thanks sir for the reply,
Regards
Sikander

On Thu, Jan 21, 2016 at 2:16 AM, sikander Azam 
wrote:

> Resp. Gavin Abo
> Thanks sir for the reply, I got the point.
> Regards
> Sikander
>
> On Thu, Jan 21, 2016 at 1:02 AM, Gavin Abo  wrote:
>
>> If you have the calculated rho/tau from BoltzTraP, (rho/tau)_calculated,
>> and the experimental conductivity, rho_experimental, you could use the
>> equation given in the "How can I calculate the conductivity" in the "1.3
>> Frequently Asked Question" section of the BoltzTraP UserGuide to estimate
>> what the tau might be, which is
>>
>> tau = rho_experimental/(rho/tau)_calculated
>>
>>
>> On 1/21/2016 1:10 AM, sikander Azam wrote:
>>
>> Dear All
>> How i can obtain the value of tau from my calculated electronic
>> conductivity and from the experimental electronic conductivity.
>> Regards
>> Azam
>>
>>
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>>
>
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Re: [Wien] need help

2016-01-21 Thread sikander Azam
Resp. Gavin Abo
Thanks sir for the reply, I got the point.
Regards
Sikander

On Thu, Jan 21, 2016 at 1:02 AM, Gavin Abo  wrote:

> If you have the calculated rho/tau from BoltzTraP, (rho/tau)_calculated,
> and the experimental conductivity, rho_experimental, you could use the
> equation given in the "How can I calculate the conductivity" in the "1.3
> Frequently Asked Question" section of the BoltzTraP UserGuide to estimate
> what the tau might be, which is
>
> tau = rho_experimental/(rho/tau)_calculated
>
>
> On 1/21/2016 1:10 AM, sikander Azam wrote:
>
> Dear All
> How i can obtain the value of tau from my calculated electronic
> conductivity and from the experimental electronic conductivity.
> Regards
> Azam
>
>
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Re: [Wien] the sequence of doing +U and SOC in a GGA+U+SOC calculation

2016-01-21 Thread tran

With solids containing open d-shell, it is usually possible
to stabilize several solutions corresponding to different
occupations of the d-orbitals.  Which solution one finds, may
depends on the electron density used at the beginning of the
SCF procedure. A good criteria is to choose the solution that
has the most negative total energy (:ENE in case.scf).

F. Tran

On Thu, 21 Jan 2016, Bin Shao wrote:


Dear all,
I need to do GGA+U+SOC calculation with 3d and 4/5d atoms. I found that the
results with different sequence of doing +U and SOC were different, i.e., if
you first do +U calculation and then +SOC, the result is different from that
of first doing SOC and then +U. Shouldn't that be the same? What is the
right way to do GGA+U+SOC calculation?

Best,

Bin Shao





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Re: [Wien] need help

2016-01-21 Thread Karel Vyborny
This recipe should be taken with caution though. It effectively relies on 
a single band picture of transport. In reality, relaxation times can 
(and typically are) different for different bands crossing the Fermi 
level. The plasma frequencies for individual bands should then be weighted 
with these band-dependent relaxation times and total conductivity is the 
sum.


KV


--- x ---
dr. Karel Vyborny
Fyzikalni ustav AV CR, v.v.i.
Cukrovarnicka 10
Praha 6, CZ-16253
tel: +420220318459


On Thu, 21 Jan 2016, Gavin Abo wrote:


If you have the calculated rho/tau from BoltzTraP, (rho/tau)_calculated, and
the experimental conductivity, rho_experimental, you could use the equation
given in the "How can I calculate the conductivity" in the "1.3 Frequently
Asked Question" section of the BoltzTraP UserGuide to estimate what the tau
might be, which is

tau = rho_experimental/(rho/tau)_calculated

On 1/21/2016 1:10 AM, sikander Azam wrote:
  Dear All
How i can obtain the value of tau from my calculated electronic
conductivity and from the experimental electronic conductivity.
Regards
Azam




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Re: [Wien] need help

2016-01-21 Thread Gavin Abo
If you have the calculated rho/tau from BoltzTraP, (rho/tau)_calculated, 
and the experimental conductivity, rho_experimental, you could use the 
equation given in the "How can I calculate the conductivity" in the "1.3 
Frequently Asked Question" section of the BoltzTraP UserGuide to 
estimate what the tau might be, which is


tau = rho_experimental/(rho/tau)_calculated

On 1/21/2016 1:10 AM, sikander Azam wrote:

Dear All
How i can obtain the value of tau from my calculated electronic 
conductivity and from the experimental electronic conductivity.

Regards
Azam
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[Wien] the sequence of doing +U and SOC in a GGA+U+SOC calculation

2016-01-21 Thread Bin Shao
Dear all,

I need to do GGA+U+SOC calculation with 3d and 4/5d atoms. I found that the
results with different sequence of doing +U and SOC were different, i.e.,
if you first do +U calculation and then +SOC, the result is different from
that of first doing SOC and then +U. Shouldn't that be the same? What is
the right way to do GGA+U+SOC calculation?

Best,

Bin Shao
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[Wien] need help

2016-01-21 Thread sikander Azam
Dear All
How i can obtain the value of tau from my calculated electronic
conductivity and from the experimental electronic conductivity.
Regards
Azam
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