Re: [Wien] Question of bad E(TOP) with no error

2024-04-09 Thread Peter Blaha

Hi,

The "crazy" E-top is NOT a problem.

While for very low lying semicore states we expect to find E-top AND 
E-bottom  (STOP in the corresponding line of case.in1), this is not 
necessary for higher states. (CONT in in1). We simply do not search for 
E-top much above EF, since this could lead to an E-parameter (expansion 
energy of the radial wavefunction) which is higher than EF and thus in 
the unoccupied region. Obviously, during scf we are interested on an 
accurate description of the OCCUPIED states below EF.


Just one further remark (provided you did not have RMTs above 2.3 in the 
original setup with -prec 1):


init_lapw -perc 1 -ecut -7.0 -sp
runsp_lapw -i 1000 -fc 3 -p
save_lapw unrelaxed
runsp_lapw -i 1000 -min -fc 1 -p
save_lapw relaxed
init_lapw -prec 2 -ecut -7.0 -sp-nodstart<- this would save a lot 
of cpu time
runsp_lapw -i 1000 -cc 0.0001 -p

-nodstart will not produce a new density, but you would continue with 
the already converged one (from the previous runsp_lapw). Only if you 
had large spheres (above 2.3), prec 2 will reduce these spheres 
automatically and you must start over with dstart since the radial mesh 
has been changed.


I am doing a project about KFe2As2 surface.


After relaxing the surface slab in prec 1, i did a prec 2 calculation with cc 
0.0001.
There is no error in the process, but when i check the scf1up and scf1dn, i 
found that E(TOP) is not good.

ATOMIC SPHERE DEPENDENT PARAMETERS FOR ATOM  As1
:e__0004: OVERALL ENERGY PARAMETER IS0.0158
   OVERALL BASIS SET ON ATOM IS LAPW
:E2_0004: E( 2)=0.0158
  APW+lo
:E2_0004: E( 2)=   -2.3962   E(BOTTOM)=   -2.455   E(TOP)=   -2.337  0  1   120
  LOCAL ORBITAL
:E0_0004: E( 0)=0.4158
  APW+lo
:E0_0004: E( 0)=   -0.8200   E(BOTTOM)=   -1.495   E(TOP)= -520.000  3 -1   175
  LOCAL ORBITAL
:E1_0004: E( 1)=0.0158
  APW+lo
:E1_0004: E( 1)=0.0158
  LOCAL ORBITAL(SECDER)

   ATOMIC SPHERE DEPENDENT PARAMETERS FOR ATOM  As2
:e__0005: OVERALL ENERGY PARAMETER IS0.0158
   OVERALL BASIS SET ON ATOM IS LAPW
:E2_0005: E( 2)=0.0158
  APW+lo
:E2_0005: E( 2)=   -2.4026   E(BOTTOM)=   -2.462   E(TOP)=   -2.344  0  1   124
  LOCAL ORBITAL
:E0_0005: E( 0)=0.4158
  APW+lo
:E0_0005: E( 0)=   -0.8200   E(BOTTOM)=   -1.506   E(TOP)= -520.000  3 -1   175
  LOCAL ORBITAL
:E1_0005: E( 1)=0.0158
  APW+lo
:E1_0005: E( 1)=0.0158
  LOCAL ORBITAL(SECDER)

Is there any influence to the results? if is,what should i do?
The structure is 1X1X1 supercell with 25 vacuum in z(for less time),rmt reduced 
3%.

init_lapw -perc 1 -ecut -7.0 -sp
runsp_lapw -i 1000 -fc 3 -p
save_lapw unrelaxed
runsp_lapw -i 1000 -min -fc 1 -p
save_lapw relaxed
init_lapw -prec 2 -ecut -7.0 -sp
runsp_lapw -i 1000 -cc 0.0001 -p

in outputst,the As is

 As  RHFS

  FOR SPIN  1   R-MT=   2.12000   R*V=  -3.20524  V=  -1.51191
  FOR SPIN  2   R-MT=   2.12000   R*V=  -2.68025  V=  -1.26427

  TOTAL CHARGE FOR SPIN1 :  18.0108162
  TOTAL CHARGE FOR SPIN1  INSIDE SPHERE:15.842689296044156
  TOTAL CHARGE FOR SPIN2 :  15.0108740
  TOTAL CHARGE FOR SPIN2  INSIDE SPHERE:14.639384914097263
  TOTAL CHARGE in sigma FOR SPIN1 : 
0.
  TOTAL CHARGE in sigma FOR SPIN1 INSIDE SPHERE:
0.
  TOTAL CHARGE in sigma FOR SPIN2 : 
0.
  TOTAL CHARGE in sigma FOR SPIN2 INSIDE SPHERE:
0.

   E-up(Ry)  E-dn(Ry)   Occupancy   q/sphere  core-state
   1S-861.070611   -861.062271  1.00  1.001.  T
   2S-109.198830   -109.195361  1.00  1.001.  T
   2P*-97.557529-97.550205  1.00  1.001.  T
   2P -94.870103-94.863015  2.00  2.001.  T
   3S -13.958022-13.947526  1.00  1.001.  T
   3P*-10.047612-10.035593  1.00  1.000.  T
   3P  -9.678540 -9.666373  2.00  2.000.  T
   3D* -2.998617 -2.979436  2.00  2.000.9965  F
   3D  -2.945248 -2.925727  3.00  3.000.9963  F
   4S  -1.117588 -0.948715  1.00  1.000.6527  F
   4P* -0.448722 -0.278655  1.00  0.000.4165  F
   4P  -0.428475 -0.258969  2.00  0.000.3984  F

  TOTAL CORE-CHARGE:   18.00
  TOTAL CORE-CHARGE INSIDE SPHERE: 17.999236
  TOTAL CORE-CHARGE OUTSIDE SPHERE: 0.000764

  TOTAL ENERGY (RYD):-4521.980893
  SUM OF EI:-2.6347206E+03 NUC:-1.0916132E+04 COUL:-7.0407530E+03
  V-XC SPIN 1:-1.1047898E+02 E-XC SPIN 1:-8.4909182E+01
  V-XC SPIN 2:-1.0750097E+02 E-XC SPIN 2:-8.2641601E+01

In addition, in the bulk 

[Wien] Question of bad E(TOP) with no error

2024-04-09 Thread 夏宇阳
Dear all,
I am doing a project about KFe2As2 surface.
After relaxing the surface slab in prec 1, i did a prec 2 calculation with cc 
0.0001.
There is no error in the process, but when i check the scf1up and scf1dn, i 
found that E(TOP) is not good.

ATOMIC SPHERE DEPENDENT PARAMETERS FOR ATOM  As1   
:e__0004: OVERALL ENERGY PARAMETER IS0.0158
  OVERALL BASIS SET ON ATOM IS LAPW
:E2_0004: E( 2)=0.0158
 APW+lo
:E2_0004: E( 2)=   -2.3962   E(BOTTOM)=   -2.455   E(TOP)=   -2.337  0  1   120
 LOCAL ORBITAL
:E0_0004: E( 0)=0.4158
 APW+lo
:E0_0004: E( 0)=   -0.8200   E(BOTTOM)=   -1.495   E(TOP)= -520.000  3 -1   175
 LOCAL ORBITAL
:E1_0004: E( 1)=0.0158
 APW+lo
:E1_0004: E( 1)=0.0158
 LOCAL ORBITAL(SECDER)

  ATOMIC SPHERE DEPENDENT PARAMETERS FOR ATOM  As2   
:e__0005: OVERALL ENERGY PARAMETER IS0.0158
  OVERALL BASIS SET ON ATOM IS LAPW
:E2_0005: E( 2)=0.0158
 APW+lo
:E2_0005: E( 2)=   -2.4026   E(BOTTOM)=   -2.462   E(TOP)=   -2.344  0  1   124
 LOCAL ORBITAL
:E0_0005: E( 0)=0.4158
 APW+lo
:E0_0005: E( 0)=   -0.8200   E(BOTTOM)=   -1.506   E(TOP)= -520.000  3 -1   175
 LOCAL ORBITAL
:E1_0005: E( 1)=0.0158
 APW+lo
:E1_0005: E( 1)=0.0158
 LOCAL ORBITAL(SECDER)

Is there any influence to the results? if is,what should i do?
The structure is 1X1X1 supercell with 25 vacuum in z(for less time),rmt reduced 
3%.

init_lapw -perc 1 -ecut -7.0 -sp 
runsp_lapw -i 1000 -fc 3 -p
save_lapw unrelaxed
runsp_lapw -i 1000 -min -fc 1 -p
save_lapw relaxed
init_lapw -prec 2 -ecut -7.0 -sp 
runsp_lapw -i 1000 -cc 0.0001 -p

in outputst,the As is

As  RHFS

 FOR SPIN  1   R-MT=   2.12000   R*V=  -3.20524  V=  -1.51191
 FOR SPIN  2   R-MT=   2.12000   R*V=  -2.68025  V=  -1.26427

 TOTAL CHARGE FOR SPIN1 :  18.0108162 
 TOTAL CHARGE FOR SPIN1  INSIDE SPHERE:15.842689296044156 
 TOTAL CHARGE FOR SPIN2 :  15.0108740 
 TOTAL CHARGE FOR SPIN2  INSIDE SPHERE:14.639384914097263 
 TOTAL CHARGE in sigma FOR SPIN1 : 
0. 
 TOTAL CHARGE in sigma FOR SPIN1 INSIDE SPHERE:
0. 
 TOTAL CHARGE in sigma FOR SPIN2 : 
0. 
 TOTAL CHARGE in sigma FOR SPIN2 INSIDE SPHERE:
0. 

  E-up(Ry)  E-dn(Ry)   Occupancy   q/sphere  core-state
  1S-861.070611   -861.062271  1.00  1.001.  T
  2S-109.198830   -109.195361  1.00  1.001.  T
  2P*-97.557529-97.550205  1.00  1.001.  T
  2P -94.870103-94.863015  2.00  2.001.  T
  3S -13.958022-13.947526  1.00  1.001.  T
  3P*-10.047612-10.035593  1.00  1.000.  T
  3P  -9.678540 -9.666373  2.00  2.000.  T
  3D* -2.998617 -2.979436  2.00  2.000.9965  F
  3D  -2.945248 -2.925727  3.00  3.000.9963  F
  4S  -1.117588 -0.948715  1.00  1.000.6527  F
  4P* -0.448722 -0.278655  1.00  0.000.4165  F
  4P  -0.428475 -0.258969  2.00  0.000.3984  F

 TOTAL CORE-CHARGE:   18.00
 TOTAL CORE-CHARGE INSIDE SPHERE: 17.999236
 TOTAL CORE-CHARGE OUTSIDE SPHERE: 0.000764

 TOTAL ENERGY (RYD):-4521.980893
 SUM OF EI:-2.6347206E+03 NUC:-1.0916132E+04 COUL:-7.0407530E+03
 V-XC SPIN 1:-1.1047898E+02 E-XC SPIN 1:-8.4909182E+01
 V-XC SPIN 2:-1.0750097E+02 E-XC SPIN 2:-8.2641601E+01

In addition, in the bulk calulation, the As still has a bad E(TOP).

Looking forward to your reply.

With regards!

Yuyang Xia
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Re: [Wien] Wannier

2024-04-09 Thread Fecher, Gerhard
did you see the occupancies, then you should know whether the orbital with or 
without star (*) belongs to the spin-orbit split  j=l+1/2 and j=l-1/2 orbitals
p_1/2 p_3/2
d_3/2 d_5/2
f 
but it is also clear from the energies, isn't it.

Ciao
Gerhard

DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
"I think the problem, to be quite honest with you,
is that you have never actually known what the question is."


Dr. Gerhard H. Fecher
Institut of Physics
Johannes Gutenberg - University
55099 Mainz

Von: Wien [wien-boun...@zeus.theochem.tuwien.ac.at] im Auftrag von pluto via 
Wien [wien@zeus.theochem.tuwien.ac.at]
Gesendet: Dienstag, 9. April 2024 16:41
An: A Mailing list for WIEN2k users
Cc: pluto
Betreff: Re: [Wien] Wannier

Dear Prof. Blaha, dear All,

I would like to come back to the issue of the charge inside the sphere.
Our particular case is PtTe2, but it is general. Calculation are
spin-polarized with SOC, all atoms were disconnected/split (so I have
Pt, Te1, and Te2 atoms to make sure I can check all spin reversals on
different atoms etc).

RMTs are 2.5 for Pt and 2.48 for Te. Relevant parts of the case.outputst
are below. Obviously, Pt 5d and Te 5p are the most relevant, their
charges inside the sphere are approx. 0.85 and 0.5.

To avoid guessing, I would appreciate an explanation of the different
columns in case.outputst. What are the orbitals with the stars?

I am getting partial densities by using the qtl program, typically with
real-orbitals or Ylm basis.

For plotting fat bands, should I divide the numbers from case.qtlup/dn
by the charge inside the sphere?

Best,
Lukasz








Pt
   E-up(Ry)  E-dn(Ry)   Occupancy   q/sphere  core-state
   1S   -5756.006478  -5756.005274  1.00  1.001.  T
   2S   -1010.356841  -1010.352378  1.00  1.001.  T
   2P*   -968.214397   -968.211103  1.00  1.001.  T
   2P-841.118352   -841.114494  2.00  2.001.  T
   3S-237.291552   -237.289470  1.00  1.001.  T
   3P*   -218.410048   -218.407658  1.00  1.001.  T
   3P-190.470613   -190.468370  2.00  2.001.  T
   3D*   -159.097230   -159.093734  2.00  2.001.  T
   3D-153.076620   -153.073194  3.00  3.001.  T
   4S -50.981008-50.976044  1.00  1.001.  T
   4P*-42.975137-42.970052  1.00  1.001.  T
   4P -36.321439-36.316745  2.00  2.001.  T
   4D*-23.227719-23.30  2.00  2.001.  T
   4D -21.990710-21.985156  3.00  3.001.  T
   5S  -7.469817 -7.438889  1.00  1.000.9996  T
   5P* -4.923501 -4.887281  1.00  1.000.9982  F
   5P  -3.830395 -3.787722  2.00  2.000.9950  F
   4F* -5.269117 -5.261410  3.00  3.001.  F
   4F  -5.015410 -5.007479  4.00  4.001.  F
   5D* -0.535208 -0.471416  2.00  2.000.8798  F
   5D  -0.438844 -0.372982  3.00  2.000.8505  F
   6S  -0.447897 -0.372441  1.00  0.000.4004  F

Te
   E-up(Ry)  E-dn(Ry)   Occupancy   q/sphere  core-state
   1S   -2323.039164  -2323.035820  1.00  1.001.  T
   2S-356.100549   -356.099048  1.00  1.001.  T
   2P*   -333.625439   -333.622392  1.00  1.001.  T
   2P-313.450684   -313.447864  2.00  2.001.  T
   3S -70.851197-70.848181  1.00  1.001.  T
   3P*-61.613361-61.609911  1.00  1.001.  T
   3P -57.853192-57.849769  2.00  2.001.  T
   3D*-41.564608-41.561402  2.00  2.001.  T
   3D -40.778403-40.775171  3.00  3.001.  T
   4S -12.052589-12.045197  1.00  1.001.  T
   4P* -8.878596 -8.871057  1.00  1.000.  T
   4P  -8.164923 -8.157381  2.00  2.000.  T
   4D* -3.107354 -3.094692  2.00  2.000.9965  F
   4D  -2.999823 -2.986687  3.00  3.000.9961  F
   5S  -1.135690 -1.047498  1.00  1.000.7392  F
   5P* -0.508181 -0.415232  1.00  1.000.5192  F
   5P  -0.450261 -0.357641  2.00  0.000.4739  F






On 2024-02-17 10:43, Peter Blaha wrote:
> Hi,
>
> Yes, for sure you can forget the "Blm" and most important are the
> "Alm".
>
> There are 2 problems:
>
> You may have some "Clm" (local orbitals), which could be dominating !
> While this is probably less important for real "semicore states" as
> you may not use them for PES, it might be important for something like
> C or O s states or Ti-4s,4p valence states. The problems can be
> avoided when modifying case.in1 and removing the local orbitals for
> the atoms with low valence states like O-2s, ; and for the atoms
> with semicore states, put the 4s as APW and the 3s as LO (2nd line in
> case.in1).
>
>
> The more critical problem is that the ALMs give you only the amplitude
> and phase INSIDE the atomic sphere.
>
> Checkout 

Re: [Wien] Wannier

2024-04-09 Thread pluto via Wien

Dear Prof. Blaha, dear All,

I would like to come back to the issue of the charge inside the sphere. 
Our particular case is PtTe2, but it is general. Calculation are 
spin-polarized with SOC, all atoms were disconnected/split (so I have 
Pt, Te1, and Te2 atoms to make sure I can check all spin reversals on 
different atoms etc).


RMTs are 2.5 for Pt and 2.48 for Te. Relevant parts of the case.outputst 
are below. Obviously, Pt 5d and Te 5p are the most relevant, their 
charges inside the sphere are approx. 0.85 and 0.5.


To avoid guessing, I would appreciate an explanation of the different 
columns in case.outputst. What are the orbitals with the stars?


I am getting partial densities by using the qtl program, typically with 
real-orbitals or Ylm basis.


For plotting fat bands, should I divide the numbers from case.qtlup/dn 
by the charge inside the sphere?


Best,
Lukasz








Pt
  E-up(Ry)  E-dn(Ry)   Occupancy   q/sphere  core-state
  1S   -5756.006478  -5756.005274  1.00  1.001.  T
  2S   -1010.356841  -1010.352378  1.00  1.001.  T
  2P*   -968.214397   -968.211103  1.00  1.001.  T
  2P-841.118352   -841.114494  2.00  2.001.  T
  3S-237.291552   -237.289470  1.00  1.001.  T
  3P*   -218.410048   -218.407658  1.00  1.001.  T
  3P-190.470613   -190.468370  2.00  2.001.  T
  3D*   -159.097230   -159.093734  2.00  2.001.  T
  3D-153.076620   -153.073194  3.00  3.001.  T
  4S -50.981008-50.976044  1.00  1.001.  T
  4P*-42.975137-42.970052  1.00  1.001.  T
  4P -36.321439-36.316745  2.00  2.001.  T
  4D*-23.227719-23.30  2.00  2.001.  T
  4D -21.990710-21.985156  3.00  3.001.  T
  5S  -7.469817 -7.438889  1.00  1.000.9996  T
  5P* -4.923501 -4.887281  1.00  1.000.9982  F
  5P  -3.830395 -3.787722  2.00  2.000.9950  F
  4F* -5.269117 -5.261410  3.00  3.001.  F
  4F  -5.015410 -5.007479  4.00  4.001.  F
  5D* -0.535208 -0.471416  2.00  2.000.8798  F
  5D  -0.438844 -0.372982  3.00  2.000.8505  F
  6S  -0.447897 -0.372441  1.00  0.000.4004  F

Te
  E-up(Ry)  E-dn(Ry)   Occupancy   q/sphere  core-state
  1S   -2323.039164  -2323.035820  1.00  1.001.  T
  2S-356.100549   -356.099048  1.00  1.001.  T
  2P*   -333.625439   -333.622392  1.00  1.001.  T
  2P-313.450684   -313.447864  2.00  2.001.  T
  3S -70.851197-70.848181  1.00  1.001.  T
  3P*-61.613361-61.609911  1.00  1.001.  T
  3P -57.853192-57.849769  2.00  2.001.  T
  3D*-41.564608-41.561402  2.00  2.001.  T
  3D -40.778403-40.775171  3.00  3.001.  T
  4S -12.052589-12.045197  1.00  1.001.  T
  4P* -8.878596 -8.871057  1.00  1.000.  T
  4P  -8.164923 -8.157381  2.00  2.000.  T
  4D* -3.107354 -3.094692  2.00  2.000.9965  F
  4D  -2.999823 -2.986687  3.00  3.000.9961  F
  5S  -1.135690 -1.047498  1.00  1.000.7392  F
  5P* -0.508181 -0.415232  1.00  1.000.5192  F
  5P  -0.450261 -0.357641  2.00  0.000.4739  F






On 2024-02-17 10:43, Peter Blaha wrote:

Hi,

Yes, for sure you can forget the "Blm" and most important are the 
"Alm".


There are 2 problems:

You may have some "Clm" (local orbitals), which could be dominating !
While this is probably less important for real "semicore states" as
you may not use them for PES, it might be important for something like
C or O s states or Ti-4s,4p valence states. The problems can be
avoided when modifying case.in1 and removing the local orbitals for
the atoms with low valence states like O-2s, ; and for the atoms
with semicore states, put the 4s as APW and the 3s as LO (2nd line in
case.in1).


The more critical problem is that the ALMs give you only the amplitude
and phase INSIDE the atomic sphere.

Checkout case.outputst, and you will see how much l-like charge of a
particular atom is within the atomic sphere.

For instance for Ti (RMT=2.25)

  3D* -0.355365 -0.246227  2.00  0.00    0.8136  F
  4S  -0.342909 -0.306636  1.00  1.00    0.1495  F

++

 it means that 81 % of the 3d charge is inside the sphere, but only
15% of 4s charge.

This has the consequence that a pure 3d state might have a
"alm=sqrt(0.8)", but a PURE 4s state has only alm=sqrt(0.15).

This is the reason, why we introduced the "renormalized partial DOS",
where the interstital DOS is removed and the 3d PDOS will be slightly,
the 4s PDOS strongly enhanced. You should probably use a similar
concept and use the renormalization factors given in the output of a
rendos calculation.

Regards

Peter Blaha


Am 16.02.2024 um 23:28 schrieb pluto:

Dear Oleg, Mikhail, dear Prof. Blaha,

Thank you for the quick 

[Wien] 回复: error in exercise 6(MgO surface slab)

2024-04-09 Thread harri...@sjtu.edu.cn
run_lapw发自我的手机 原始邮件 发件人: "Rubel, Oleg" 日期: 2024年4月9日周二 傍晚5:23收件人: A Mailing list for WIEN2k users 主题: Re: [Wien] error in exercise 6(MgO surface slab)At which step (command) does the segmentation fault occur?> On Apr 9, 2024, at 10:19 AM, 夏宇阳  wrote:> > Caution: External email.> > > Dear Oleg,> i just follow the guide step by step.> And the error is:> > Program received signal SIGSEGV: Segmentation fault - invalid memory reference.> > Backtrace for this error:> #0  0x817bc823960 in ???> #1  0x817bc822ac5 in ???> #2  0x817bc44251f in ???>    at ./signal/../sysdeps/unix/sysv/linux/x86_64/libc_sigaction.c:0> #3  0x817bc5a1082 in ???>    at ../sysdeps/x86_64/multiarch/memset-vec-unaligned-erms.S:394> #4  0x57975d1a3c47 in ???> #5  0x57975d13a80e in ???> #6  0x817bc429d8f in __libc_start_call_main>    at ../sysdeps/nptl/libc_start_call_main.h:58> #7  0x817bc429e3f in __libc_start_main_impl>    at ../csu/libc-start.c:392> #8  0x57975d13a834 in ???> #9  0x in ???> Segmentation fault (core dumped)> >>  stop error> > This wont happen when use PBE and WC> > With regards!> > Yuyang Xia___Wien mailing listWien@zeus.theochem.tuwien.ac.athttp://zeus.theochem.tuwien.ac.at/mailman/listinfo/wienSEARCH the MAILING-LIST at:  http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html___
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Re: [Wien] error in exercise 6(MgO surface slab)

2024-04-09 Thread Rubel, Oleg
At which step (command) does the segmentation fault occur?

> On Apr 9, 2024, at 10:19 AM, 夏宇阳  wrote:
> 
> Caution: External email.
> 
> 
> Dear Oleg,
> i just follow the guide step by step.
> And the error is:
> 
> Program received signal SIGSEGV: Segmentation fault - invalid memory 
> reference.
> 
> Backtrace for this error:
> #0  0x817bc823960 in ???
> #1  0x817bc822ac5 in ???
> #2  0x817bc44251f in ???
>at ./signal/../sysdeps/unix/sysv/linux/x86_64/libc_sigaction.c:0
> #3  0x817bc5a1082 in ???
>at ../sysdeps/x86_64/multiarch/memset-vec-unaligned-erms.S:394
> #4  0x57975d1a3c47 in ???
> #5  0x57975d13a80e in ???
> #6  0x817bc429d8f in __libc_start_call_main
>at ../sysdeps/nptl/libc_start_call_main.h:58
> #7  0x817bc429e3f in __libc_start_main_impl
>at ../csu/libc-start.c:392
> #8  0x57975d13a834 in ???
> #9  0x in ???
> Segmentation fault (core dumped)
> 
>>  stop error
> 
> This wont happen when use PBE and WC
> 
> With regards!
> 
> Yuyang Xia

___
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Re: [Wien] error in exercise 6(MgO surface slab)

2024-04-09 Thread 夏宇阳
Dear Oleg,
i just follow the guide step by step.
And the error is:

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:
#0  0x817bc823960 in ???
#1  0x817bc822ac5 in ???
#2  0x817bc44251f in ???
at ./signal/../sysdeps/unix/sysv/linux/x86_64/libc_sigaction.c:0
#3  0x817bc5a1082 in ???
at ../sysdeps/x86_64/multiarch/memset-vec-unaligned-erms.S:394
#4  0x57975d1a3c47 in ???
#5  0x57975d13a80e in ???
#6  0x817bc429d8f in __libc_start_call_main
at ../sysdeps/nptl/libc_start_call_main.h:58
#7  0x817bc429e3f in __libc_start_main_impl
at ../csu/libc-start.c:392
#8  0x57975d13a834 in ???
#9  0x in ???
Segmentation fault (core dumped)

>   stop error

This wont happen when use PBE and WC

With regards!

Yuyang Xia
- 原始邮件 -
发件人: "Rubel, Oleg" 
收件人: "A Mailing list for WIEN2k users" 
发送时间: 星期二, 2024年 4 月 09日 下午 3:21:30
主题: Re: [Wien] error in exercise 6(MgO surface slab)

Dear Yuyang,

I tested the tutorial and initialized the calculation with "init_lapw -b -vxc 5 
-numk 600”. It works on my end (Wien2k v23.2, Wannier90 v2.1.0). We also tested 
with Wannier 3.X for the workshop. Please be more specific about your steps 
leading to the error message and the message itself.

Thank you
Oleg

> On Apr 8, 2024, at 11:48 PM, harri...@sjtu.edu.cn wrote:
> 
> Caution: External email.
> 
> Dear Prof.Blaha,
> It is on my home computer with wien2k_23.
> 
> And there is another error existing when i do the scf of GaAs following the 
> guide of "wien2k + w2wannier+wannier90".
> 
> I can't use LDA for initialization, and it will lead an error in scf 
> calculation. But I can use PBE and WC.They perform well.
> 
> Looking forward to your reply.
> 
> With regards!
> 
> Yuyang Xia
> 
> 
> 
> 
> 
> 
> 
> 
> 发自我的手机
> 
> 
>  原始邮件 
> 发件人: Peter Blaha 
> 日期: 2024年4月9日周二 凌晨4:07
> 收件人: wien@zeus.theochem.tuwien.ac.at
> 主 题: Re: [Wien] error in exercise 6(MgO surface slab)
> Hi,
> 
> Where does this happen and with which version of WIEN2k.
> 
> It is on the workshop nodes or on your home computer with WIEN2k_23.
> 
> I'm aware of this problem and I think I fixed in on the workshop nodes. 
> Of course it will still happen when using  WIEN2k_23 and only the next 
> release will have fixed it.
> 
> Peter Blaha
> 
> Am 08.04.2024 um 16:43 schrieb 夏宇阳:
> > Dear all,
> > I am doing the latest exercise 6(MgO surface slab),and there is a error 
> > when do "init_lapw -prec 1n"
> >
> > STOP KGEN ENDS
> > NUMK: 1000
> > basic k-mesh: 12, 12, 2 = 288,  kfactor = .1000
> >NUMBER OF K-POINTS IN WHOLE CELL: (0 for 3 divisions of K, -1 for 
> > delta-K)
> > At line 243 of file main.f (unit = 5, file = 'stdin')
> > Fortran runtime error: Bad integer for item 1 in list input
> >
> > what should i do?
> > Looking forward to your reply.
> >
> > With regards!
> > ___
> > Wien mailing list
> > Wien@zeus.theochem.tuwien.ac.at
> > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> > SEARCH the MAILING-LIST at:  
> > http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
> 
> -- 
> ---
> Peter Blaha,  Inst. f. Materials Chemistry, TU Vienna, A-1060 Vienna
> Phone: +43-158801165300
> Email: peter.bl...@tuwien.ac.at
> WWW:   http://www.imc.tuwien.ac.at  WIEN2k: http://www.wien2k.at
> -
> 
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:  
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
> ___
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> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:  
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html

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Re: [Wien] error in exercise 6(MgO surface slab)

2024-04-09 Thread Rubel, Oleg
Dear Yuyang,

I tested the tutorial and initialized the calculation with "init_lapw -b -vxc 5 
-numk 600”. It works on my end (Wien2k v23.2, Wannier90 v2.1.0). We also tested 
with Wannier 3.X for the workshop. Please be more specific about your steps 
leading to the error message and the message itself.

Thank you
Oleg

> On Apr 8, 2024, at 11:48 PM, harri...@sjtu.edu.cn wrote:
> 
> Caution: External email.
> 
> Dear Prof.Blaha,
> It is on my home computer with wien2k_23.
> 
> And there is another error existing when i do the scf of GaAs following the 
> guide of "wien2k + w2wannier+wannier90".
> 
> I can't use LDA for initialization, and it will lead an error in scf 
> calculation. But I can use PBE and WC.They perform well.
> 
> Looking forward to your reply.
> 
> With regards!
> 
> Yuyang Xia
> 
> 
> 
> 
> 
> 
> 
> 
> 发自我的手机
> 
> 
>  原始邮件 
> 发件人: Peter Blaha 
> 日期: 2024年4月9日周二 凌晨4:07
> 收件人: wien@zeus.theochem.tuwien.ac.at
> 主 题: Re: [Wien] error in exercise 6(MgO surface slab)
> Hi,
> 
> Where does this happen and with which version of WIEN2k.
> 
> It is on the workshop nodes or on your home computer with WIEN2k_23.
> 
> I'm aware of this problem and I think I fixed in on the workshop nodes. 
> Of course it will still happen when using  WIEN2k_23 and only the next 
> release will have fixed it.
> 
> Peter Blaha
> 
> Am 08.04.2024 um 16:43 schrieb 夏宇阳:
> > Dear all,
> > I am doing the latest exercise 6(MgO surface slab),and there is a error 
> > when do "init_lapw -prec 1n"
> >
> > STOP KGEN ENDS
> > NUMK: 1000
> > basic k-mesh: 12, 12, 2 = 288,  kfactor = .1000
> >NUMBER OF K-POINTS IN WHOLE CELL: (0 for 3 divisions of K, -1 for 
> > delta-K)
> > At line 243 of file main.f (unit = 5, file = 'stdin')
> > Fortran runtime error: Bad integer for item 1 in list input
> >
> > what should i do?
> > Looking forward to your reply.
> >
> > With regards!
> > ___
> > Wien mailing list
> > Wien@zeus.theochem.tuwien.ac.at
> > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> > SEARCH the MAILING-LIST at:  
> > http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
> 
> -- 
> ---
> Peter Blaha,  Inst. f. Materials Chemistry, TU Vienna, A-1060 Vienna
> Phone: +43-158801165300
> Email: peter.bl...@tuwien.ac.at
> WWW:   http://www.imc.tuwien.ac.at  WIEN2k: http://www.wien2k.at
> -
> 
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:  
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:  
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html

___
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