Re: [Wien] Parallel compilation installation

2014-06-24 Thread Michael Sluydts 
To add to Abraime's explanation, if you use the free -m command, if you 
check the -/+ buffers/cache line you can see how much is really free.


-Michael Sluydts

Luis Ogando schreef op 24/06/2014 13:33:

Hi Abraime,

  If you are using something like "top" command in a terminal, do not 
worry about the "Mem: " row. You have to look ate the "%MEM" column.

   All the best,
Luis


2014-06-23 13:03 GMT-03:00 Brahim ABRAIME >:


The memory RAM in use of the machines does not decrease when we
kill the processes of Wien2k on the CPU
Ans suggestions please ?

Le 17 juin 2014 22:10, "Gavin Abo" mailto:gs...@crimson.ua.edu>> a écrit :



what about the environment in which we must mention the list
of machines that will run parallel computing?


If you are using a single PC, you should be able to use "edit
.machines" in the menu of w2web.  See section "5.5.4 The
.machines file" in the Wien2k 13.1 usersguide
[http://www.wien2k.at/reg_user/textbooks/usersguide.pdf],
which describes the content of the .machines file.

I also find the University of Texas slides at the following
link useful:

https://www.xsede.org/documents/10157/305826/ecss_hliu_051012.pdf

If you are using a cluster, you should talk to your system
administer(s), because they should know everything about your
cluster system and should be able to help you create the best
configuration for your system (something we know nothing about
it).  There is a webpage in FAQ on the Wien2k website that can
help with that:

http://www.wien2k.at/reg_user/faq/pbs.html


I also want to know the parameters for multi threading


I think there was some previous discussion on threading. 
Search the mail archive at:


http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/

For example, try searching with the keyword: OMP_NUM_THREADS



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Re: [Wien] Parallel compilation installation

2014-06-24 Thread Luis Ogando 
Hi Abraime,

  If you are using something like "top" command in a terminal, do not worry
about the "Mem: " row. You have to look ate the "%MEM" column.
   All the best,
Luis


2014-06-23 13:03 GMT-03:00 Brahim ABRAIME :

> The memory RAM in use of the machines does not decrease when we kill the
> processes of Wien2k on the CPU
> Ans suggestions please ?
> Le 17 juin 2014 22:10, "Gavin Abo"  a écrit :
>
>>
>>   what about the environment in which we must mention the list of
>> machines that will run parallel computing?
>>
>>
>> If you are using a single PC, you should be able to use "edit .machines"
>> in the menu of w2web.  See section "5.5.4 The .machines file" in the Wien2k
>> 13.1 usersguide [http://www.wien2k.at/reg_user/textbooks/usersguide.pdf],
>> which describes the content of the .machines file.
>>
>> I also find the University of Texas slides at the following link useful:
>>
>> https://www.xsede.org/documents/10157/305826/ecss_hliu_051012.pdf
>>
>> If you are using a cluster, you should talk to your system administer(s),
>> because they should know everything about your cluster system and should be
>> able to help you create the best configuration for your system (something
>> we know nothing about it).  There is a webpage in FAQ on the Wien2k website
>> that can help with that:
>>
>> http://www.wien2k.at/reg_user/faq/pbs.html
>>
>>  I also want to know the parameters for multi threading
>>
>>
>> I think there was some previous discussion on threading.  Search the mail
>> archive at:
>>
>> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/
>>
>> For example, try searching with the keyword: OMP_NUM_THREADS
>>
>>
>>
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>> SEARCH the MAILING-LIST at:
>> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>>
>>
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>
>
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Re: [Wien] Parallel compilation installation

2014-06-23 Thread Brahim ABRAIME 
The memory RAM in use of the machines does not decrease when we kill the
processes of Wien2k on the CPU
Ans suggestions please ?
Le 17 juin 2014 22:10, "Gavin Abo"  a écrit :

>
>   what about the environment in which we must mention the list of
> machines that will run parallel computing?
>
>
> If you are using a single PC, you should be able to use "edit .machines"
> in the menu of w2web.  See section "5.5.4 The .machines file" in the Wien2k
> 13.1 usersguide [http://www.wien2k.at/reg_user/textbooks/usersguide.pdf],
> which describes the content of the .machines file.
>
> I also find the University of Texas slides at the following link useful:
>
> https://www.xsede.org/documents/10157/305826/ecss_hliu_051012.pdf
>
> If you are using a cluster, you should talk to your system administer(s),
> because they should know everything about your cluster system and should be
> able to help you create the best configuration for your system (something
> we know nothing about it).  There is a webpage in FAQ on the Wien2k website
> that can help with that:
>
> http://www.wien2k.at/reg_user/faq/pbs.html
>
>  I also want to know the parameters for multi threading
>
>
> I think there was some previous discussion on threading.  Search the mail
> archive at:
>
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/
>
> For example, try searching with the keyword: OMP_NUM_THREADS
>
>
>
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>
>
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Re: [Wien] Parallel compilation installation

2014-06-17 Thread Gavin Abo 


what about the environment in which we must mention the list of 
machines that will run parallel computing?


If you are using a single PC, you should be able to use "edit .machines" 
in the menu of w2web.  See section "5.5.4 The .machines file" in the 
Wien2k 13.1 usersguide 
[http://www.wien2k.at/reg_user/textbooks/usersguide.pdf], which 
describes the content of the .machines file.


I also find the University of Texas slides at the following link useful:

https://www.xsede.org/documents/10157/305826/ecss_hliu_051012.pdf

If you are using a cluster, you should talk to your system 
administer(s), because they should know everything about your cluster 
system and should be able to help you create the best configuration for 
your system (something we know nothing about it). There is a webpage in 
FAQ on the Wien2k website that can help with that:


http://www.wien2k.at/reg_user/faq/pbs.html


I also want to know the parameters for multi threading


I think there was some previous discussion on threading.  Search the 
mail archive at:


http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/

For example, try searching with the keyword: OMP_NUM_THREADS


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[Wien] Parallel compilation installation

2014-06-17 Thread delamora 
Now that the Mexico and Brazil game ended I can continue...



You need to open the connection without password;



ssh-keygen -N "" -t dsa



this creates in the directory



~/.ssh


also the



id_dsa

id_dsa.pub



files

now copy "id_dsa.pub" at the end of

authorized_keys



and the permisions of the files in '.ssh' should be 700, that is:



chmod 700 *



that is, only the user has permission for everything and the group or the world 
cannot modify, see or execute the files in the '.ssh' directory



next time that you reenter your account



ssh me@localhost



it will not ask for password



Now, if you want to work in another machine then copy the



id_dsa.pub



into the



authorized_keys



of the other machine.






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Re: [Wien] Parallel compilation installation

2014-06-17 Thread Brahim ABRAIME 
what about the environment in which we must mention the list of machines
that will run parallel computing?

I also want to know the parameters for multi threading

I am very thankful for your precious time



2014-06-17 20:23 GMT+00:00 delamora :

>  you need to open the connection without password;
>
>
>  ssh-keygen -N "" -t dsa
>
>
>  ***
>
> not;
>
> man ssh-keygen -N "" -t dsa
>
> ***
>
>
>  this creates in the directory
>
>
>  ~/.ssh
>
>
>  the id_dsa and id_dsa.pub
>
>
>  now copy "id_dsa.pub" at the end of
>
>
>  authorized_keys
>
>
>  and the permisions of the files in '.ssh' should be 700, that is:
>
>
>  chmod 700 *
>
>
>  that is, only the user has permission for everything and the group or
> the world cannot modify, see or execute the files in the '.ssh' directory
>
>
>  next time that you reenter your account
>
>
>  ssh me@localhost
>
>
>  it will not ask for password
>
>
>  --
> *De:* wien-boun...@zeus.theochem.tuwien.ac.at <
> wien-boun...@zeus.theochem.tuwien.ac.at> en nombre de Brahim ABRAIME <
> b.abra...@gmail.com>
> *Enviado:* martes, 17 de junio de 2014 11:10 a.m.
> *Para:* A Mailing list for WIEN2k users
> *Asunto:* [Wien] Parallel compilation installation
>
>  Dear Wien users,
> Could you help me on the parallel installation of Wien on station but in
> condition of the use of the full power of the station
>
>  Thank you
>
>
>  --
>
>
>
> *Cordialement ** *
>
> *B.ABRAIME *
>
> *Master Physique Informatique *
>
> *LMPHE *
>
> *Faculté des sciences Rabat-Agdal *
>
> *Université Mohamed V-Agdal ***
>
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>
>


-- 



*Cordialement***

*B.ABRAIME*

*Master Physique Informatique*

*LMPHE*

*Faculté des sciences Rabat-Agdal*

*Université Mohamed V-Agdal***
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Re: [Wien] Parallel compilation installation

2014-06-17 Thread delamora 
you need to open the connection without password;


ssh-keygen -N "" -t dsa


***

not;

man ssh-keygen -N "" -t dsa

***


this creates in the directory


~/.ssh


the id_dsa and id_dsa.pub


now copy "id_dsa.pub" at the end of


authorized_keys


and the permisions of the files in '.ssh' should be 700, that is:


chmod 700 *


that is, only the user has permission for everything and the group or the world 
cannot modify, see or execute the files in the '.ssh' directory


next time that you reenter your account


ssh me@localhost


it will not ask for password



De: wien-boun...@zeus.theochem.tuwien.ac.at 
 en nombre de Brahim ABRAIME 

Enviado: martes, 17 de junio de 2014 11:10 a.m.
Para: A Mailing list for WIEN2k users
Asunto: [Wien] Parallel compilation installation

Dear Wien users,
Could you help me on the parallel installation of Wien on station but in 
condition of the use of the full power of the station

Thank you


--
Cordialement

**
B.ABRAIME
Master Physique Informatique
LMPHE
Faculté des sciences Rabat-Agdal
Université Mohamed V-Agdal
**
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Re: [Wien] Parallel compilation installation

2014-06-17 Thread delamora 
you need to open the connection without password;


man ssh-keygen -N "" -t dsa


this creates in the directory


~/.ssh


the id_dsa and id_dsa.pub


now copy "id_dsa.pub" at the end of


authorized_keys


and the permisions of the files in '.ssh' should be 700, that is:


chmod 700 *


that is, only the user has permission for everything and the group or the world 
cannot modify, see or execute the files in the '.ssh' directory


next time that you reenter your account


ssh me@localhost


it will not ask for password



De: wien-boun...@zeus.theochem.tuwien.ac.at 
 en nombre de Brahim ABRAIME 

Enviado: martes, 17 de junio de 2014 11:10 a.m.
Para: A Mailing list for WIEN2k users
Asunto: [Wien] Parallel compilation installation

Dear Wien users,
Could you help me on the parallel installation of Wien on station but in 
condition of the use of the full power of the station

Thank you


--
Cordialement

**
B.ABRAIME
Master Physique Informatique
LMPHE
Faculté des sciences Rabat-Agdal
Université Mohamed V-Agdal
**
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[Wien] Parallel compilation installation

2014-06-17 Thread Brahim ABRAIME 
Dear Wien users,
Could you help me on the parallel installation of Wien on station but in
condition of the use of the full power of the station

Thank you


-- 



*Cordialement***

*B.ABRAIME*

*Master Physique Informatique*

*LMPHE*

*Faculté des sciences Rabat-Agdal*

*Université Mohamed V-Agdal***
___
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