Re: [Wien] Parallel calculation -stop of iterations after mixer. :ENE NaN value

2018-10-28 Thread Laurence Marks
A NaN means that something has gone wrong. While this may show up with the
mixer, it probably occurs somewhere else. When I look at your struct file,
the Mg and O atoms at the interface have low BVS, indicating that there
will be a significant contraction along your z axis. You picked RMTs for
the initial structure with the spheres almost touching or even touching --
they are smaller than setrmt recommends.

I strongly suspect that your calculation is failing because you have
touching spheres.

The simplest thing to do is reduce the RMTs, for instance use "setrmt case
-r 5". With the previous converged calculation you might be able to use
"reduce_rmt_lapw -r 5 -sp". However, since your initial RMTs were too large
this might not work. Make sure that you do not do this with densities where
you have a NaN.

This may not resolve the problem. I am 99% certain you won't get anywhere
with what you sent with your current RMTs



On Sun, Oct 28, 2018 at 8:36 AM Coriolan TIUSAN <
coriolan.tiu...@phys.utcluj.ro> wrote:

> Dear wien2k users,
>
> I am running wien 18.2 on Ubuntu 18.04 , installed on a HP station:
> 64GB,  Intel® Xeon(R) Gold 5118 CPU @ 2.30GHz × 48.
>
> The fortran compiler/math library are ifc and intel mkl library. For
> parallel execution I have MPI+SCALAPACK, FFTW.
>
> When calculating multilayered structures (e.g. V(3ML)/Fe(3ML)/MgO(3ML)
> in supercell slab model (attached structure file), after a certain
> number of iterations towards the convergence, I have a sudden stop,
> without any error (in error files) after the mixer.
>
> I have similar problems for similar heterostructures: Au/Fe/MgO, but
> only when trying to do geometrical optimization (force minimisation).
> The initial scf calculation for Au/Fe/MgO slab converged (runsp_lapw -cc
> 0.001, -ec 0.0001 -p)  without any errors. I guess that, this would
> demonstrate that the programs have been properly installed and functional?
>
> Coming back to the stop in scf for V/Fe/MgO, the following things can be
> remarked:
>
> 1/ For the  last iteration case.scf file containes NaN values for  :DIS
> and :ENE,
>
> :DEN  : DENSITY INTEGRAL  =NaN   (Ry)
>
> :ENE  : *WARNING** TOTAL ENERGY IN Ry =   NaN
>
> 2/ The dayfile displays:
>
>   LAPW0 END
> [1]Done  mpirun -np 48 -machinefile
> .machine0 /home/tiusan/W2k/lapw0_mpi lapw0.def >> .time00
>   LAPW1 END
> [1]  + Done  ( cd $PWD; $t $ttt; rm -f
> .lock_$lockfile[$p] ) >> .time1_$loop
>   LAPW1 END
> [1]  + Done  ( cd $PWD; $t $ttt; rm -f
> .lock_$lockfile[$p] ) >> .time1_$loop
> LAPW2 - FERMI; weights written
>   LAPW2 END
> [1]Done  ( cd $PWD; $t $ttt $vector_split;
> rm -f .lock_$lockfile[$p] ) >> .time2_$loop
>   SUMPARA END
> LAPW2 - FERMI; weights written
>   LAPW2 END
> [1]Done  ( cd $PWD; $t $ttt $vector_split;
> rm -f .lock_$lockfile[$p] ) >> .time2_$loop
>   SUMPARA END
>   CORE  END
>   CORE  END
>   MIXER END
> (standard_in) 1: syntax error
> (standard_in) 1: syntax error
> (standard_in) 1: syntax error
> (standard_in) 1: syntax error
> (standard_in) 1: syntax error
> etest: Subscript out of range.
>
> 3/ Following some remarks from the frum, I have added sleep 1 in the
> testconv script, without any success...
>
> Could someone help?
>
> With thanks in advance,
>
> Coriolan TIUSAN
>
>
>
> --
> __
> |   Prof. Dr. Eng. Habil. Coriolan Viorel TIUSAN  |
> |---  |
> | |
> | Department of Physics and Chemistry |
> | Technical University of Cluj-Napoca |
> | |
> | Center of Superconductivity, Spintronics and Surface Science|
> | Str. Memorandumului No. 28, RO-400114 Cluj-Napoca, ROMANIA  |
> | |
> |   Tel: +40-264-401-465 Fax: +40-264-592-055 |
> |Cell: +40-732-893-750|
> |   e-mail: coriolan.tiu...@phys.utcluj.ro|
> |   web:
> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.c4s.utcluj.ro_&d=DwIDaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=gK1X21ldrBrldjPvKy6UgGo_7lxghPbF8Yr2tJYqacU&s=tkRhrdmNBQuLJiyt8vPw_QlJD2SiWa8vcPMREiRgPh4&e=
>   |
> |___  |
> | |
> |  Senior Researcher  |
> |  National Center of Scientific Research - FRANCE|
> |  e-mail: coriolan.tiu...@ijl.nancy-universite.fr

[Wien] Parallel calculation -stop of iterations after mixer. :ENE NaN value

2018-10-28 Thread Coriolan TIUSAN

Dear wien2k users,

I am running wien 18.2 on Ubuntu 18.04 , installed on a HP station: 
64GB,  Intel® Xeon(R) Gold 5118 CPU @ 2.30GHz × 48.


The fortran compiler/math library are ifc and intel mkl library. For 
parallel execution I have MPI+SCALAPACK, FFTW.


When calculating multilayered structures (e.g. V(3ML)/Fe(3ML)/MgO(3ML) 
in supercell slab model (attached structure file), after a certain 
number of iterations towards the convergence, I have a sudden stop, 
without any error (in error files) after the mixer.


I have similar problems for similar heterostructures: Au/Fe/MgO, but 
only when trying to do geometrical optimization (force minimisation). 
The initial scf calculation for Au/Fe/MgO slab converged (runsp_lapw -cc 
0.001, -ec 0.0001 -p)  without any errors. I guess that, this would 
demonstrate that the programs have been properly installed and functional?


Coming back to the stop in scf for V/Fe/MgO, the following things can be 
remarked:


1/ For the  last iteration case.scf file containes NaN values for  :DIS 
and :ENE,


:DEN  : DENSITY INTEGRAL  =    NaN   (Ry)

:ENE  : *WARNING** TOTAL ENERGY IN Ry =   NaN

2/ The dayfile displays:

 LAPW0 END
[1]    Done  mpirun -np 48 -machinefile 
.machine0 /home/tiusan/W2k/lapw0_mpi lapw0.def >> .time00

 LAPW1 END
[1]  + Done  ( cd $PWD; $t $ttt; rm -f 
.lock_$lockfile[$p] ) >> .time1_$loop

 LAPW1 END
[1]  + Done  ( cd $PWD; $t $ttt; rm -f 
.lock_$lockfile[$p] ) >> .time1_$loop

LAPW2 - FERMI; weights written
 LAPW2 END
[1]    Done  ( cd $PWD; $t $ttt $vector_split; 
rm -f .lock_$lockfile[$p] ) >> .time2_$loop

 SUMPARA END
LAPW2 - FERMI; weights written
 LAPW2 END
[1]    Done  ( cd $PWD; $t $ttt $vector_split; 
rm -f .lock_$lockfile[$p] ) >> .time2_$loop

 SUMPARA END
 CORE  END
 CORE  END
 MIXER END
(standard_in) 1: syntax error
(standard_in) 1: syntax error
(standard_in) 1: syntax error
(standard_in) 1: syntax error
(standard_in) 1: syntax error
etest: Subscript out of range.

3/ Following some remarks from the frum, I have added sleep 1 in the 
testconv script, without any success...


Could someone help?

With thanks in advance,

Coriolan TIUSAN



--
__
|   Prof. Dr. Eng. Habil. Coriolan Viorel TIUSAN  |
|---  |
| |
| Department of Physics and Chemistry |
| Technical University of Cluj-Napoca |
| |
| Center of Superconductivity, Spintronics and Surface Science|
| Str. Memorandumului No. 28, RO-400114 Cluj-Napoca, ROMANIA  |
| |
|   Tel: +40-264-401-465 Fax: +40-264-592-055 |
|Cell: +40-732-893-750|
|   e-mail: coriolan.tiu...@phys.utcluj.ro|
|   web: http://www.c4s.utcluj.ro/|
|___  |
| |
|  Senior Researcher  |
|  National Center of Scientific Research - FRANCE|
|  e-mail: coriolan.tiu...@ijl.nancy-universite.fr|
|  web: http://www.c4s.utcluj.ro/webperso/tiusan/welcome.html |
|_|

VFeMgO 
P   LATTICE,NONEQUIV.ATOMS: 13 
MODE OF CALC=RELA unit=ang 
  5.725872  5.725872 33.391474 90.00 90.00 90.00   
ATOM  -1: X=0. Y=0. Z=0.
  MULT= 1  ISPLIT=-2
V 1NPT=  781  R0=0.5000 RMT=2.0800   Z: 23.0   
LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -2: X=0.5000 Y=0.5000 Z=0.08573854
  MULT= 1  ISPLIT=-2
V 2NPT=  781  R0=0.5000 RMT=2.0800   Z: 23.0   
LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -3: X=0. Y=0. Z=0.17147708
  MULT= 1  ISPLIT=-2
V 3NPT=  781  R0=0.5000 RMT=2.0800   Z: 23.0   
LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.