Re: [Wien] lapw1.def failed

2023-12-17 Thread Gavin Abo
A possible cause of the "Killed" message is the operating system 
terminating the program.  For example, the user or queue system might 
have initiated a kill to the operating system for the job while it was 
still in the process of running.  The operating system might also 
automatically kill the running process if all memory (or queue system 
memory limit [1]) on the system has been exhausted.


You might want to check the system log.  Refer to [2].

[1] https://doc.hpc.iter.es/2023.08/en/slurm/slurm_memory_limits/
[2] 
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19703.html


Kind Regards,

Gavin
WIEN2k user

On 12/17/2023 6:11 AM, shamik chakrabarti wrote:

Dear Madam & Sir,
                         The error appeared at the first cycle itself 
with the following error;

STOP  LAPW0 END
Killed
grep: lapw2*.error: No such file or directory

>   stop error

What could be the remedy?

Looking forward to your reply.

with regards,___
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Re: [Wien] lapw1.def failed

2023-12-17 Thread shamik chakrabarti
Dear Madam & Sir,

 The error appeared at the first cycle itself with
the following error;
STOP  LAPW0 END
Killed
grep: lapw2*.error: No such file or directory

>   stop error

What could be the remedy?

Looking forward to your reply.

with regards,

On Sat, 16 Dec 2023 at 17:08, Fecher, Gerhard  wrote:

> Not to forget: where is the structure coming from ?
>
> Ciao
> Gerhard
>
> DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
> "I think the problem, to be quite honest with you,
> is that you have never actually known what the question is."
>
> 
> Dr. Gerhard H. Fecher
> Institut of Physics
> Johannes Gutenberg - University
> 55099 Mainz
> 
> Von: Wien [wien-boun...@zeus.theochem.tuwien.ac.at] im Auftrag von
> Lyudmila Dobysheva via Wien [wien@zeus.theochem.tuwien.ac.at]
> Gesendet: Samstag, 16. Dezember 2023 12:02
> An: wien@zeus.theochem.tuwien.ac.at
> Cc: Lyudmila Dobysheva
> Betreff: Re: [Wien] lapw1.def failed
>
> 16.12.2023 10:37, shamik chakrabarti wrote:
> > At the 7th cycle I got the following error;
> > stop error
> > error: command   /home/akt/Desktop/Shamik_Installation/Wien2k/lapw1c
> > lapw1.def   failed
> >  >   lapw1 -c (02:25:39) 737.008u 71.143s 5:39.69 237.9% 0+0k
> > 1064+165016io 8pf+0w
> >  >   lapw0 (02:24:23) 176.006u 3.565s 1:16.19 235.6% 0+0k
> > 4264+103984io 22pf+0w
> > In error file it is written as "Error in LAPW1"
>
> Failed here not lapw1.def, but command lapw1c with a standard argument
> lapw1.def
> You gave too little information. There should be some info, maybe in
> case.dayfile, or .output1, :log
> Is it in parallel mode or not?
> Try to repeat in terminal the command
> x lapw1 -c
> sometimes its output is more informative.
> What are other settings? case.in* files?
> Check what happened in the first six iterations and compare the outputs
> with those in the 7th.
> Was computer well at that time? maybe some accident problem occurred?
> Does the stop repeat at the same place?
> and so long, and so forth...
>
> Best wishes
> Lyudmila Dobysheva
> --
> http://ftiudm.ru/content/view/25/103/lang,english/
> Institute of Physics and Technology,
> Udmurt Federal Research Center, Ural Br. of Rus.Ac.Sci.
> 426000 Izhevsk Kirov str. 132
> Russia
> ---
> Tel. +7 (34I2)43-24-59 (office), +7 (9I2)OI9-795O (home)
> Skype: lyuka18 (office), lyuka17 (home)
> E-mail: lyuk...@mail.ru (office), lyuk...@gmail.com (home)
>
> ___
> Wien mailing list
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> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:
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>


-- 
Dr. Shamik Chakrabarti
Research Fellow
Department of Physics
Indian Institute of Technology Patna
Bihta-801103
Patna
Bihar, India
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Re: [Wien] lapw1.def failed

2023-12-16 Thread Fecher, Gerhard
Not to forget: where is the structure coming from ?

Ciao
Gerhard

DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
"I think the problem, to be quite honest with you,
is that you have never actually known what the question is."


Dr. Gerhard H. Fecher
Institut of Physics
Johannes Gutenberg - University
55099 Mainz

Von: Wien [wien-boun...@zeus.theochem.tuwien.ac.at] im Auftrag von Lyudmila 
Dobysheva via Wien [wien@zeus.theochem.tuwien.ac.at]
Gesendet: Samstag, 16. Dezember 2023 12:02
An: wien@zeus.theochem.tuwien.ac.at
Cc: Lyudmila Dobysheva
Betreff: Re: [Wien] lapw1.def failed

16.12.2023 10:37, shamik chakrabarti wrote:
> At the 7th cycle I got the following error;
> stop error
> error: command   /home/akt/Desktop/Shamik_Installation/Wien2k/lapw1c
> lapw1.def   failed
>  >   lapw1 -c (02:25:39) 737.008u 71.143s 5:39.69 237.9% 0+0k
> 1064+165016io 8pf+0w
>  >   lapw0 (02:24:23) 176.006u 3.565s 1:16.19 235.6% 0+0k
> 4264+103984io 22pf+0w
> In error file it is written as "Error in LAPW1"

Failed here not lapw1.def, but command lapw1c with a standard argument
lapw1.def
You gave too little information. There should be some info, maybe in
case.dayfile, or .output1, :log
Is it in parallel mode or not?
Try to repeat in terminal the command
x lapw1 -c
sometimes its output is more informative.
What are other settings? case.in* files?
Check what happened in the first six iterations and compare the outputs
with those in the 7th.
Was computer well at that time? maybe some accident problem occurred?
Does the stop repeat at the same place?
and so long, and so forth...

Best wishes
Lyudmila Dobysheva
--
http://ftiudm.ru/content/view/25/103/lang,english/
Institute of Physics and Technology,
Udmurt Federal Research Center, Ural Br. of Rus.Ac.Sci.
426000 Izhevsk Kirov str. 132
Russia
---
Tel. +7 (34I2)43-24-59 (office), +7 (9I2)OI9-795O (home)
Skype: lyuka18 (office), lyuka17 (home)
E-mail: lyuk...@mail.ru (office), lyuk...@gmail.com (home)

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Re: [Wien] lapw1.def failed

2023-12-16 Thread Lyudmila Dobysheva via Wien

16.12.2023 10:37, shamik chakrabarti wrote:

At the 7th cycle I got the following error;
    stop error
error: command   /home/akt/Desktop/Shamik_Installation/Wien2k/lapw1c 
lapw1.def   failed
 >   lapw1     -c (02:25:39) 737.008u 71.143s 5:39.69 237.9% 0+0k 
1064+165016io 8pf+0w
 >   lapw0     (02:24:23) 176.006u 3.565s 1:16.19 235.6% 0+0k 
4264+103984io 22pf+0w

In error file it is written as "Error in LAPW1"


Failed here not lapw1.def, but command lapw1c with a standard argument 
lapw1.def
You gave too little information. There should be some info, maybe in 
case.dayfile, or .output1, :log

Is it in parallel mode or not?
Try to repeat in terminal the command
x lapw1 -c
sometimes its output is more informative.
What are other settings? case.in* files?
Check what happened in the first six iterations and compare the outputs 
with those in the 7th.
Was computer well at that time? maybe some accident problem occurred? 
Does the stop repeat at the same place?

and so long, and so forth...

Best wishes
Lyudmila Dobysheva
--
http://ftiudm.ru/content/view/25/103/lang,english/
Institute of Physics and Technology,
Udmurt Federal Research Center, Ural Br. of Rus.Ac.Sci.
426000 Izhevsk Kirov str. 132
Russia
---
Tel. +7 (34I2)43-24-59 (office), +7 (9I2)OI9-795O (home)
Skype: lyuka18 (office), lyuka17 (home)
E-mail: lyuk...@mail.ru (office), lyuk...@gmail.com (home)

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[Wien] lapw1.def failed

2023-12-15 Thread shamik chakrabarti
Dear Wien2k users,

  I have started to simulate an electrolyte material
(structure attached) using non-spin polarization. At the 7th cycle I got
the following error;
   stop error

error: command   /home/akt/Desktop/Shamik_Installation/Wien2k/lapw1c
lapw1.def   failed
>   lapw1 -c (02:25:39) 737.008u 71.143s 5:39.69 237.9% 0+0k
1064+165016io 8pf+0w
>   lapw0 (02:24:23) 176.006u 3.565s 1:16.19 235.6% 0+0k 4264+103984io
22pf+0w

In error file it is written as "Error in LAPW1"

Looking forward to your response in this regard.

with regards,

-- 
Dr. Shamik Chakrabarti
Research Fellow
Department of Physics
Indian Institute of Technology Patna
Bihta-801103
Patna
Bihar, India


LGPSO_minf.struct
Description: Binary data
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Re: [Wien] lapw1 vs lapwso speed

2023-06-16 Thread pluto via Wien

Dear All,

Thank you for the answers.

Just to clarify, this questions was regarding a large case.klist_band 
file. For the scf run, I always use much smaller case.klist, especially 
for a large slab that has no out-of-plane dispersion.


Best,
Lukasz





On 2023-06-11 21:47, Peter Blaha wrote:

This is usually not true, except when EMAX is set to 100 Ry or so.

We use for lapwso  as basisset the lapw1 eigenstates, thus the
dimension of the lapwso eigenvalue problem is only  2 * NE, where NE
is typically (depending on EMAX) 20-30% of NMAT of lapw1.

Am 11.06.2023 um 16:33 schrieb Yundi Quan via Wien:
The matrix that lapw1 -up solves is the spin up part of the 
Hamiltonian and it should be much smaller than the matrix that lapwso 
solves.


On Sunday, June 11, 2023, Peter Blaha > wrote:


The speed of lapwso depends on EMAX in case.in1, which limits the
number of eigenvalues calculated in lapw1 and used as basis for 
lapwso.


With EMAX=5.0 the speed of lapw1 and lapwso is usually similar.
With larger emax lapwso may take much more time.

Am 11.06.2023 um 12:36 schrieb pluto via Wien:

Dear All,

When calculating bands for a large slab I have following 
sequence:


Sun May 14 12:33:03 PM CEST 2023> (x) lapw1 -band -up -p
Sun May 14 02:25:26 PM CEST 2023> (x) lapw1 -band -dn -p
Sun May 14 04:17:22 PM CEST 2023> (x) lapwso -up -p
Mon May 15 01:30:05 AM CEST 2023> (x) qtl -up -p -band -so
Mon May 15 01:30:05 AM CEST 2023> (x) lapw2 -p -fermi -so -up
Mon May 15 01:51:51 AM CEST 2023> (x) qtl -dn -p -band -so
Mon May 15 01:51:51 AM CEST 2023> (x) lapw2 -p -fermi -so -dn

As you can see lapwso takes much longer than lapw1 (approx. 9h
vs 2h). Is this normal for band calculations?

I have 128 GB of RAM in this computer, so this is not a RAM
issue. Here is what top shows for the lapwso calculation (I 
have
4 parallel localhost processes in .machines, OMP=2 and no 
mpi):


Tasks: 505 total,   2 running, 503 sleeping,   0 stopped,   0 
zombie
%Cpu(s): 24.0 us,  0.2 sy,  0.0 ni, 75.7 id,  0.0 wa,  0.1 hi, 
0.0 si, 0.0 st
MiB Mem : 128047.1 total,   1845.8 free,  16809.0 used, 
58.6

buff/cache
MiB Swap:  32088.0 total,  31471.5 free,    616.5 used. 
111238.1

avail Mem

  PID USER  PR  NI    VIRT    RES    SHR S  %CPU   
  %MEM TIME+ COMMAND
1336417 lplucin   20   0 6417856   4.8g  15840 R 199.3   3.8   
   1294:13 lapwso
1336392 lplucin   20   0 2848204   2.3g  15880 S 146.8   1.9   
   1295:30 lapwso
1336391 lplucin   20   0 2848188   2.4g  15916 S 130.6   1.9   
   1304:23 lapwso
1336396 lplucin   20   0 2848060   2.3g  15816 S  99.7   1.9   
   1288:06 lapwso


.machines file:

omp_global:8
omp_lapw1:2
omp_lapw2:2
omp_lapwso:2
1:localhost
1:localhost
1:localhost
1:localhost
granularity:1

Best,
Lukasz
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--

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Phone: +43-1-58801-165300
Email: peter.bl...@tuwien.ac.at   
 WIEN2k: http://www.wien2k.at 

WWW: http://www.imc.tuwien.ac.at 

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Re: [Wien] lapw1 vs lapwso speed

2023-06-11 Thread Peter Blaha

This is usually not true, except when EMAX is set to 100 Ry or so.

We use for lapwso  as basisset the lapw1 eigenstates, thus the dimension 
of the lapwso eigenvalue problem is only  2 * NE, where NE is typically 
(depending on EMAX) 20-30% of NMAT of lapw1.


Am 11.06.2023 um 16:33 schrieb Yundi Quan via Wien:
The matrix that lapw1 -up solves is the spin up part of the Hamiltonian 
and it should be much smaller than the matrix that lapwso solves.


On Sunday, June 11, 2023, Peter Blaha > wrote:


The speed of lapwso depends on EMAX in case.in1, which limits the
number of eigenvalues calculated in lapw1 and used as basis for lapwso.

With EMAX=5.0 the speed of lapw1 and lapwso is usually similar.
With larger emax lapwso may take much more time.

Am 11.06.2023 um 12:36 schrieb pluto via Wien:

Dear All,

When calculating bands for a large slab I have following sequence:

Sun May 14 12:33:03 PM CEST 2023> (x) lapw1 -band -up -p
Sun May 14 02:25:26 PM CEST 2023> (x) lapw1 -band -dn -p
Sun May 14 04:17:22 PM CEST 2023> (x) lapwso -up -p
Mon May 15 01:30:05 AM CEST 2023> (x) qtl -up -p -band -so
Mon May 15 01:30:05 AM CEST 2023> (x) lapw2 -p -fermi -so -up
Mon May 15 01:51:51 AM CEST 2023> (x) qtl -dn -p -band -so
Mon May 15 01:51:51 AM CEST 2023> (x) lapw2 -p -fermi -so -dn

As you can see lapwso takes much longer than lapw1 (approx. 9h
vs 2h). Is this normal for band calculations?

I have 128 GB of RAM in this computer, so this is not a RAM
issue. Here is what top shows for the lapwso calculation (I have
4 parallel localhost processes in .machines, OMP=2 and no mpi):

Tasks: 505 total,   2 running, 503 sleeping,   0 stopped,   0 zombie
%Cpu(s): 24.0 us,  0.2 sy,  0.0 ni, 75.7 id,  0.0 wa,  0.1 hi, 
0.0 si, 0.0 st

MiB Mem : 128047.1 total,   1845.8 free,  16809.0 used, 58.6
buff/cache
MiB Swap:  32088.0 total,  31471.5 free,    616.5 used. 111238.1
avail Mem

  PID USER  PR  NI    VIRT    RES    SHR S  %CPU 
%MEM TIME+ COMMAND
1336417 lplucin   20   0 6417856   4.8g  15840 R 199.3   3.8  
1294:13 lapwso
1336392 lplucin   20   0 2848204   2.3g  15880 S 146.8   1.9  
1295:30 lapwso
1336391 lplucin   20   0 2848188   2.4g  15916 S 130.6   1.9  
1304:23 lapwso
1336396 lplucin   20   0 2848060   2.3g  15816 S  99.7   1.9  
1288:06 lapwso


.machines file:

omp_global:8
omp_lapw1:2
omp_lapw2:2
omp_lapwso:2
1:localhost
1:localhost
1:localhost
1:localhost
granularity:1

Best,
Lukasz
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--

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Phone: +43-1-58801-165300
Email: peter.bl...@tuwien.ac.at    
WIEN2k: http://www.wien2k.at 

WWW: http://www.imc.tuwien.ac.at 
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Re: [Wien] lapw1 vs lapwso speed

2023-06-11 Thread Laurence Marks
Let me make a different comment. If you have 2hr for lapw1, 9 hr for
lapwso, it will be almost impossible to get results in less than weeks.

Therefore I suggest looking more carefully:
1) Do you need all the kpoints?
2) Are your RMTs too small?
3) Is your RKMAX too large?

Think.

Then add -so with at first a smaller EMAX to converge, then increase. It is
frequently better to preconverge with decent RKMAX, kpts etc before doing a
final step with better parameters.

If it is really ~ 14 hr per iteration, get access to better
(super)computers.

--
Professor Laurence Marks (Laurie)
Department of Materials Science and Engineering, Northwestern University
www.numis.northwestern.edu
"Research is to see what everybody else has seen, and to think what nobody
else has thought" Albert Szent-Györgyi

On Sun, Jun 11, 2023, 17:29 Peter Blaha  wrote:

> The speed of lapwso depends on EMAX in case.in1, which limits the number
> of eigenvalues calculated in lapw1 and used as basis for lapwso.
>
> With EMAX=5.0 the speed of lapw1 and lapwso is usually similar.
> With larger emax lapwso may take much more time.
>
> Am 11.06.2023 um 12:36 schrieb pluto via Wien:
> > Dear All,
> >
> > When calculating bands for a large slab I have following sequence:
> >
> > Sun May 14 12:33:03 PM CEST 2023> (x) lapw1 -band -up -p
> > Sun May 14 02:25:26 PM CEST 2023> (x) lapw1 -band -dn -p
> > Sun May 14 04:17:22 PM CEST 2023> (x) lapwso -up -p
> > Mon May 15 01:30:05 AM CEST 2023> (x) qtl -up -p -band -so
> > Mon May 15 01:30:05 AM CEST 2023> (x) lapw2 -p -fermi -so -up
> > Mon May 15 01:51:51 AM CEST 2023> (x) qtl -dn -p -band -so
> > Mon May 15 01:51:51 AM CEST 2023> (x) lapw2 -p -fermi -so -dn
> >
> > As you can see lapwso takes much longer than lapw1 (approx. 9h vs 2h).
> > Is this normal for band calculations?
> >
> > I have 128 GB of RAM in this computer, so this is not a RAM issue. Here
> > is what top shows for the lapwso calculation (I have 4 parallel
> > localhost processes in .machines, OMP=2 and no mpi):
> >
> > Tasks: 505 total,   2 running, 503 sleeping,   0 stopped,   0 zombie
> > %Cpu(s): 24.0 us,  0.2 sy,  0.0 ni, 75.7 id,  0.0 wa,  0.1 hi,  0.0 si,
> > 0.0 st
> > MiB Mem : 128047.1 total,   1845.8 free,  16809.0 used, 58.6
> buff/cache
> > MiB Swap:  32088.0 total,  31471.5 free,616.5 used. 111238.1 avail
> Mem
> >
> >  PID USER  PR  NIVIRTRESSHR S  %CPU  %MEM TIME+
> > COMMAND
> > 1336417 lplucin   20   0 6417856   4.8g  15840 R 199.3   3.8   1294:13
> > lapwso
> > 1336392 lplucin   20   0 2848204   2.3g  15880 S 146.8   1.9   1295:30
> > lapwso
> > 1336391 lplucin   20   0 2848188   2.4g  15916 S 130.6   1.9   1304:23
> > lapwso
> > 1336396 lplucin   20   0 2848060   2.3g  15816 S  99.7   1.9   1288:06
> > lapwso
> >
> > .machines file:
> >
> > omp_global:8
> > omp_lapw1:2
> > omp_lapw2:2
> > omp_lapwso:2
> > 1:localhost
> > 1:localhost
> > 1:localhost
> > 1:localhost
> > granularity:1
> >
> > Best,
> > Lukasz
> > ___
> > Wien mailing list
> > Wien@zeus.theochem.tuwien.ac.at
> > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> > SEARCH the MAILING-LIST at:
> > http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>
> --
> --
> Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
> Phone: +43-1-58801-165300
> Email: peter.bl...@tuwien.ac.atWIEN2k: http://www.wien2k.at
> WWW:   http://www.imc.tuwien.ac.at
> -
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Re: [Wien] lapw1 vs lapwso speed

2023-06-11 Thread sjalali

 Dear Lukasz,

 The difference in computation time between lapw1 and lapwso
calculations is expected in band calculations. The lapwso step
involves the calculation of spin-orbit coupling, which can be
computationally more demanding compared to the lapw1 step that
calculates the bands without spin-orbit coupling.

 The lapwso calculation includes additional interactions between the
spin of the electron and its orbital motion, which requires more
computational resources and time. Therefore, it is normal to observe a
longer runtime for lapwso compared to lapw1.

 In your case, the lapwso process is utilizing a significant portion
of the CPU resources, as indicated by the high CPU usage percentages
(%CPU) in the top output. The memory usage (%MEM) is also relatively
high for the lapwso processes.

 It appears that you have allocated sufficient resources (OMP=2) for
the lapwso step, and your system has ample memory available.
Therefore, the longer runtime can be attributed to the inherent
complexity of the spin-orbit coupling calculations rather than a
resource limitation.

 If you need to optimize the performance further, you may consider
adjusting the OMP settings or exploring parallelization options with
k-points or MPI to distribute the workload across multiple cores or
processors. However, it's important to note that the total runtime for
the lapwso step will inherently be longer due to the nature of the
calculations involved.

Suggestions for trying:
omp_global:4
#omp_lapw1:2
#omp_lapw2:2
#omp_lapwso:2

In WIEN2k, k-points parallelization can be more efficient. You can use
the testpara_lapw command to assess if increasing the number of
"1:localhost" lines in your .machines file is necessary. testpara_lapw
is a utility program in the WIEN2k package that helps determine the
optimal number of lines (k-points) needed for accurate calculations.

Compiling the code with appropriate optimization flags can
significantly improve the performance and speed of calculations. Here
are some additional suggestions related to code compilation:
Experiment with different optimization levels. Most compilers provide
different optimization levels, such as -O1, -O2, -O3. Higher
optimization levels generally provide better performance but may
increase compilation time. Use the suggestion of the siteconfig_lapw
for the right balance of the code.
Ensure that you are using the latest version of the code, i.e.,
WIEN2k_23.2. The respectful Developers have recently released
significant updates and bug fixes that can improve performance, super
thanks to Peter Blaha and all the developers.

Best regards,
Saeid


Quoting pluto via Wien :


Dear All,

When calculating bands for a large slab I have following sequence:

Sun May 14 12:33:03 PM CEST 2023> (x) lapw1 -band -up -p
Sun May 14 02:25:26 PM CEST 2023> (x) lapw1 -band -dn -p
Sun May 14 04:17:22 PM CEST 2023> (x) lapwso -up -p
Mon May 15 01:30:05 AM CEST 2023> (x) qtl -up -p -band -so
Mon May 15 01:30:05 AM CEST 2023> (x) lapw2 -p -fermi -so -up
Mon May 15 01:51:51 AM CEST 2023> (x) qtl -dn -p -band -so
Mon May 15 01:51:51 AM CEST 2023> (x) lapw2 -p -fermi -so -dn

As you can see lapwso takes much longer than lapw1 (approx. 9h vs
2h). Is this normal for band calculations?

I have 128 GB of RAM in this computer, so this is not a RAM issue.
Here is what top shows for the lapwso calculation (I have 4 parallel
localhost processes in .machines, OMP=2 and no mpi):

Tasks: 505 total,   2 running, 503 sleeping,   0 stopped,   0 zombie
%Cpu(s): 24.0 us,  0.2 sy,  0.0 ni, 75.7 id,  0.0 wa,  0.1 hi,  0.0
si,  0.0 st
MiB Mem : 128047.1 total,   1845.8 free,  16809.0 used, 58.6 buff/cache
MiB Swap:  32088.0 total,  31471.5 free,    616.5 used. 111238.1 avail Mem

   PID USER      PR  NI    VIRT    RES    SHR S  %CPU  %MEM     TIME+ COMMAND
1336417 lplucin   20   0 6417856   4.8g  15840 R 199.3   3.8   1294:13 lapwso
1336392 lplucin   20   0 2848204   2.3g  15880 S 146.8   1.9   1295:30 lapwso
1336391 lplucin   20   0 2848188   2.4g  15916 S 130.6   1.9   1304:23 lapwso
1336396 lplucin   20   0 2848060   2.3g  15816 S  99.7   1.9   1288:06 lapwso

.machines file:

omp_global:8
omp_lapw1:2
omp_lapw2:2
omp_lapwso:2
1:localhost
1:localhost
1:localhost
1:localhost
granularity:1

Best,
Lukasz
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Re: [Wien] lapw1 vs lapwso speed

2023-06-11 Thread Yundi Quan via Wien
The matrix that lapw1 -up solves is the spin up part of the Hamiltonian and
it should be much smaller than the matrix that lapwso solves.

On Sunday, June 11, 2023, Peter Blaha  wrote:

> The speed of lapwso depends on EMAX in case.in1, which limits the number
> of eigenvalues calculated in lapw1 and used as basis for lapwso.
>
> With EMAX=5.0 the speed of lapw1 and lapwso is usually similar.
> With larger emax lapwso may take much more time.
>
> Am 11.06.2023 um 12:36 schrieb pluto via Wien:
>
>> Dear All,
>>
>> When calculating bands for a large slab I have following sequence:
>>
>> Sun May 14 12:33:03 PM CEST 2023> (x) lapw1 -band -up -p
>> Sun May 14 02:25:26 PM CEST 2023> (x) lapw1 -band -dn -p
>> Sun May 14 04:17:22 PM CEST 2023> (x) lapwso -up -p
>> Mon May 15 01:30:05 AM CEST 2023> (x) qtl -up -p -band -so
>> Mon May 15 01:30:05 AM CEST 2023> (x) lapw2 -p -fermi -so -up
>> Mon May 15 01:51:51 AM CEST 2023> (x) qtl -dn -p -band -so
>> Mon May 15 01:51:51 AM CEST 2023> (x) lapw2 -p -fermi -so -dn
>>
>> As you can see lapwso takes much longer than lapw1 (approx. 9h vs 2h). Is
>> this normal for band calculations?
>>
>> I have 128 GB of RAM in this computer, so this is not a RAM issue. Here
>> is what top shows for the lapwso calculation (I have 4 parallel localhost
>> processes in .machines, OMP=2 and no mpi):
>>
>> Tasks: 505 total,   2 running, 503 sleeping,   0 stopped,   0 zombie
>> %Cpu(s): 24.0 us,  0.2 sy,  0.0 ni, 75.7 id,  0.0 wa,  0.1 hi,  0.0 si,
>> 0.0 st
>> MiB Mem : 128047.1 total,   1845.8 free,  16809.0 used, 58.6
>> buff/cache
>> MiB Swap:  32088.0 total,  31471.5 free,616.5 used. 111238.1 avail Mem
>>
>>  PID USER  PR  NIVIRTRESSHR S  %CPU  %MEM TIME+
>> COMMAND
>> 1336417 lplucin   20   0 6417856   4.8g  15840 R 199.3   3.8   1294:13
>> lapwso
>> 1336392 lplucin   20   0 2848204   2.3g  15880 S 146.8   1.9   1295:30
>> lapwso
>> 1336391 lplucin   20   0 2848188   2.4g  15916 S 130.6   1.9   1304:23
>> lapwso
>> 1336396 lplucin   20   0 2848060   2.3g  15816 S  99.7   1.9   1288:06
>> lapwso
>>
>> .machines file:
>>
>> omp_global:8
>> omp_lapw1:2
>> omp_lapw2:2
>> omp_lapwso:2
>> 1:localhost
>> 1:localhost
>> 1:localhost
>> 1:localhost
>> granularity:1
>>
>> Best,
>> Lukasz
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>> SEARCH the MAILING-LIST at:  http://www.mail-archive.com/wi
>> e...@zeus.theochem.tuwien.ac.at/index.html
>>
>
> --
> --
> Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
> Phone: +43-1-58801-165300
> Email: peter.bl...@tuwien.ac.atWIEN2k: http://www.wien2k.at
> WWW:   http://www.imc.tuwien.ac.at
> -
> ___
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> e...@zeus.theochem.tuwien.ac.at/index.html
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Re: [Wien] lapw1 vs lapwso speed

2023-06-11 Thread Peter Blaha
The speed of lapwso depends on EMAX in case.in1, which limits the number 
of eigenvalues calculated in lapw1 and used as basis for lapwso.


With EMAX=5.0 the speed of lapw1 and lapwso is usually similar.
With larger emax lapwso may take much more time.

Am 11.06.2023 um 12:36 schrieb pluto via Wien:

Dear All,

When calculating bands for a large slab I have following sequence:

Sun May 14 12:33:03 PM CEST 2023> (x) lapw1 -band -up -p
Sun May 14 02:25:26 PM CEST 2023> (x) lapw1 -band -dn -p
Sun May 14 04:17:22 PM CEST 2023> (x) lapwso -up -p
Mon May 15 01:30:05 AM CEST 2023> (x) qtl -up -p -band -so
Mon May 15 01:30:05 AM CEST 2023> (x) lapw2 -p -fermi -so -up
Mon May 15 01:51:51 AM CEST 2023> (x) qtl -dn -p -band -so
Mon May 15 01:51:51 AM CEST 2023> (x) lapw2 -p -fermi -so -dn

As you can see lapwso takes much longer than lapw1 (approx. 9h vs 2h). 
Is this normal for band calculations?


I have 128 GB of RAM in this computer, so this is not a RAM issue. Here 
is what top shows for the lapwso calculation (I have 4 parallel 
localhost processes in .machines, OMP=2 and no mpi):


Tasks: 505 total,   2 running, 503 sleeping,   0 stopped,   0 zombie
%Cpu(s): 24.0 us,  0.2 sy,  0.0 ni, 75.7 id,  0.0 wa,  0.1 hi,  0.0 si, 
0.0 st

MiB Mem : 128047.1 total,   1845.8 free,  16809.0 used, 58.6 buff/cache
MiB Swap:  32088.0 total,  31471.5 free,    616.5 used. 111238.1 avail Mem

     PID USER  PR  NI    VIRT    RES    SHR S  %CPU  %MEM TIME+ 
COMMAND
1336417 lplucin   20   0 6417856   4.8g  15840 R 199.3   3.8   1294:13 
lapwso
1336392 lplucin   20   0 2848204   2.3g  15880 S 146.8   1.9   1295:30 
lapwso
1336391 lplucin   20   0 2848188   2.4g  15916 S 130.6   1.9   1304:23 
lapwso
1336396 lplucin   20   0 2848060   2.3g  15816 S  99.7   1.9   1288:06 
lapwso


.machines file:

omp_global:8
omp_lapw1:2
omp_lapw2:2
omp_lapwso:2
1:localhost
1:localhost
1:localhost
1:localhost
granularity:1

Best,
Lukasz
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--
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300
Email: peter.bl...@tuwien.ac.atWIEN2k: http://www.wien2k.at
WWW:   http://www.imc.tuwien.ac.at
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[Wien] lapw1 vs lapwso speed

2023-06-11 Thread pluto via Wien

Dear All,

When calculating bands for a large slab I have following sequence:

Sun May 14 12:33:03 PM CEST 2023> (x) lapw1 -band -up -p
Sun May 14 02:25:26 PM CEST 2023> (x) lapw1 -band -dn -p
Sun May 14 04:17:22 PM CEST 2023> (x) lapwso -up -p
Mon May 15 01:30:05 AM CEST 2023> (x) qtl -up -p -band -so
Mon May 15 01:30:05 AM CEST 2023> (x) lapw2 -p -fermi -so -up
Mon May 15 01:51:51 AM CEST 2023> (x) qtl -dn -p -band -so
Mon May 15 01:51:51 AM CEST 2023> (x) lapw2 -p -fermi -so -dn

As you can see lapwso takes much longer than lapw1 (approx. 9h vs 2h). 
Is this normal for band calculations?


I have 128 GB of RAM in this computer, so this is not a RAM issue. Here 
is what top shows for the lapwso calculation (I have 4 parallel 
localhost processes in .machines, OMP=2 and no mpi):


Tasks: 505 total,   2 running, 503 sleeping,   0 stopped,   0 zombie
%Cpu(s): 24.0 us,  0.2 sy,  0.0 ni, 75.7 id,  0.0 wa,  0.1 hi,  0.0 si,  
0.0 st
MiB Mem : 128047.1 total,   1845.8 free,  16809.0 used, 58.6 
buff/cache
MiB Swap:  32088.0 total,  31471.5 free,616.5 used. 111238.1 avail 
Mem


PID USER  PR  NIVIRTRESSHR S  %CPU  %MEM TIME+ 
COMMAND
1336417 lplucin   20   0 6417856   4.8g  15840 R 199.3   3.8   1294:13 
lapwso
1336392 lplucin   20   0 2848204   2.3g  15880 S 146.8   1.9   1295:30 
lapwso
1336391 lplucin   20   0 2848188   2.4g  15916 S 130.6   1.9   1304:23 
lapwso
1336396 lplucin   20   0 2848060   2.3g  15816 S  99.7   1.9   1288:06 
lapwso


.machines file:

omp_global:8
omp_lapw1:2
omp_lapw2:2
omp_lapwso:2
1:localhost
1:localhost
1:localhost
1:localhost
granularity:1

Best,
Lukasz
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Re: [Wien] lapw1

2023-01-08 Thread Peter Blaha

Von: naincy Pandit 

i opened Wien2k 21.1 and opened terminal in it

gunzip *.gz
chmod +x ./expand_lapw
./expand_lapw it expandess all the files as
...
i used ./siteconfig_lapw and then



First of all: Your mail is still too large. Do not include the previous 
mails in your query and SWITCH OFF the   "html" feature in your mailer 
(use plain text).
It is quite some work to extract the relevant parts of your mail and 
reply manually. I future, I will just delete a mail, which is beyond the 
40 kB limit.

--

From the above I can see a couple of mistakes. As I said before: If an 
error/warning,... occurs, it does not make sense to continue.


If you go to the wien2k-download page, it says the following:

tar -xvf WIEN2k_21.1.tar   (skip this if you downloaded files 
separately)

gunzip *.gz
chmod +x ./expand_lapw
./check_minimal_software_requirements.sh

This will check Linux for necessary and optional software like: tcsh, 
fortran compiler, fftw,  If the required software cannot be found on 
your system, it does not make sense to continue with the installation ...


YOU HAVE NOT USED   ./check_minimal_software_requirements.sh !
---
.
i used ./siteconfig_lapw and then
"It seems you do not have the intel fortran compiler in your path.
You need a f90 compiler for the installation of WIEN2k and:
a) you have another f90 compiler installed and in your path. Continue ...
b) you have ifort installed, but it is not in your path.
   STOP  and  put two lines like:
   source /path_where_compiler_is_installed/ifortvars.(c)sh intel64|ia32
  (source /path_where_compiler_is_installed/mklvars{em64t|32}.(c)sh) 
for  earlier ifort versions

   into your .bashrc | .cshrc startup file.
c) STOP and install ifort+mkl for your platform (or an alternate compiler)
continue or stop (c/s) "
option c selected
S specify a system
then specify a system (LI)
C specify compiler
compiler ifort, icc


Now siteconfig told you, that it did not find a fortran compiler (ifort).

At this point you CANNOT continue and SELECT LI (Linux+ifort). It must 
lead to the errors coming up later.


Instead, you must read what it told you above: Which of the options a) 
b) or c) applies to you ???


a) if you have   eg.   gfortran (I did not see this in your Ubuntu 
installation), then select Linux+gfortran later on.
b) If you have installed OneAPI (as you told us), ifort is NOT in your 
path.  Stop and fix the environment.

c) Install either ifort or gfortran.

If you don't learn to read and understand the messages from the various 
programs, I'm not convinced you will master WIEN2k.


--
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300
Email: peter.bl...@tuwien.ac.atWIEN2k: http://www.wien2k.at
WWW:   http://www.imc.tuwien.ac.at
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Re: [Wien] lapw1

2023-01-06 Thread Peter Blaha

From: naincy Pandit 

Respected Sir,
As I informed you earlier I am facing some issues regarding the 
compilation of the Wien2k_21.1. I am attaching the error screenshot with 
this mail. I am using the OneAPI base tool kit which is successfully 
installed on my PC and source /opt/intel/oneapi/setvars.sh this path I 
am using in Bashrc. But now when i start the w2web command it says this 
command is not found.



You cannot attach   graphical screenshots. They are too large. You have 
to use "copy / paste".

---

Anyway, from the screenshot I can see a full page of "errors". Obviously 
the installation of WIEN2k did not work at all.
IT DOES NOT MAKE SENSE TO CONTINUE or TRY TO RUN WIEN2k AS LONG AS SUCH 
ERRORS OCCUR.


As I said before: You should list all commands explicitly, only then we 
can see if you forgot something or did something wrong. (At least in a 
similar way as you described the installation of OneAPI).


Please remove the WIEN2k_21 directory and restart the installation, but 
copy all commands you used (and eventually all error messages) for 
further reference.







--
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300
Email: peter.bl...@tuwien.ac.atWIEN2k: http://www.wien2k.at
WWW:   http://www.imc.tuwien.ac.at
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Re: [Wien] lapw1

2023-01-06 Thread Peter Blaha
Also, it looks like you might have accidentally navigated to the wrong 
option in siteconfig.


For a fresh installation, you should NEVER come to this menu which 
allows to select "update a single package".


There used to be a block [1] that I thought explained that well on the 
WIEN2k updates page, but it currently is no longer there [2].  That 
block was as follows.


This has been removed because it is potentially "unsave" to update only 
some programs but not some others because of possible dependencies. One 
should install a complete version.




To update from previous versions you can either download and install the 
complete package (highly recommended when upgrading from a rather old 
version) or download and update only individual packages (the ones which 
have been changed according to the list given below):


     SRC_w2web: just expand: gunzip SRC_w2web.tar.gz;tar -xvf SRC_w2web.tar
     SRC: expand and cp the respective shell-script to $WIENROOT: gunzip 
SRC.tar.gz;tar -xvf SRC.tar;cp SRC/CORRECTED_SCRIPT_lapw .
     For all other packages (Fortran programs) use the "update" option 
of siteconfig_lapw.






[1] 
https://web.archive.org/web/20200219062310/http://susi.theochem.tuwien.ac.at/reg_user/updates/

[2] http://susi.theochem.tuwien.ac.at/reg_user/updates/

Best Regards,

Gavin
WIEN2k user

On 1/6/2023 12:53 AM, naincy Pandit wrote:

RESPECTED SIR


as you told me to install oneAPI so i did it and now it is installed 
but there is a problem with Wien2k previously I have Wien2k 19.01 and 
now I installed Wien2k 21.1.


please tell me how to uninstall the older version so that the new one 
comes into account


again there is a problem that is

/home/naincy/WIEN2k_21.1/lapw1: Command not found.
0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
error: command   /home/naincy/WIEN2k_21.1/lapw1 lapw1.def   failed


 you told me to do ./siteconfig, i already did it but  this comes

* ***
   *           Update a package from its SRC_XX.tar.gz file              *
 ***

Available packages:
ls: No match.
ls: No match.
     Specify the name of the package XX (e.g. lapw1): lapw1
SRC_lapw1.tar.gz does not exist. Please check.

 ***
   *           Update a package from its SRC_XX.tar.gz file              *
 ***

Available packages:
ls: No match.
ls: No match.
     Specify the name of the package XX (e.g. lapw1): *

lapw1.tar.gz is not present only two folders *lapw1para_lapw 
*and* lapw1para_lapw*.*orig*  exists and I m not able to correct it 
please help me out.


On Wed, 4 Jan 2023 at 17:26, Laurence Marks  
wrote:


What you sent describes the issue:

/home/naincy/WIEN2k_21.1/nn: Command not found

That means you did not compile it correctly. Go back and check for
errors during the compilation when you did siteconfig. For
instance, go to /home/Nancy/WIEN_21.1, do ./siteconfig and
recompile just nn (for instance).

Look at the errors.

--
Professor Laurence Marks
Department of Materials Science and Engineering, Northwestern
University
www.numis.northwestern.edu 
"Research is to see what everybody else has seen, and to think
what nobody else has thought" Albert Szent-Györgyi

On Wed, Jan 4, 2023, 04:44 naincy Pandit
 wrote:

Dear Prof. Blaha sir and Wien2k users,


  i am working with Wien2k_21.1 version with Ubuntu 22.04 with oneAPI 
installed recently after installation i m geeting this type of error

  stop error
  
error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed

0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
/home/naincy/WIEN2k_21.1/nn: Command not found.
  next is nn
fileBaZrS3.struct_setrmt   generated
atom  Z   RMT-max   RMT
Use of uninitialized value $rmt[3] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 41.
Use of uninitialized value $rmt[2] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 32.
Use of uninitialized value $rmt[1] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 19.
Use of uninitialized value $rmt[0] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 10.
readline() on closed filehandle NN at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 163.
readline() on closed filehandle NN at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 152.
error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed
0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
/home/naincy/WIEN2k_21.1/nn: Command not found.

i tried to solve my problem using this link



Re: [Wien] lapw1

2023-01-06 Thread Gavin Abo
When reinstalling WIEN2k, so that I don't have to change the WIENROOT 
variable in my .bashrc (or .cshrc), I move or delete the old WIEN2k 
installation directory so that it can installed again in the same location.


Also, it looks like you might have accidentally navigated to the wrong 
option in siteconfig.


It looks like you selected "U Update a package" when you probably wanted 
"R Compile/Recompile".


The "U Update a package" is for updating an individual package and 
typically not used for a full installation.


There used to be a block [1] that I thought explained that well on the 
WIEN2k updates page, but it currently is no longer there [2].  That 
block was as follows.


To update from previous versions you can either download and install the 
complete package (highly recommended when upgrading from a rather old 
version) or download and update only individual packages (the ones which 
have been changed according to the list given below):


    SRC_w2web: just expand: gunzip SRC_w2web.tar.gz;tar -xvf SRC_w2web.tar
    SRC: expand and cp the respective shell-script to $WIENROOT: gunzip 
SRC.tar.gz;tar -xvf SRC.tar;cp SRC/CORRECTED_SCRIPT_lapw .
    For all other packages (Fortran programs) use the "update" option 
of siteconfig_lapw.


[1] 
https://web.archive.org/web/20200219062310/http://susi.theochem.tuwien.ac.at/reg_user/updates/

[2] http://susi.theochem.tuwien.ac.at/reg_user/updates/

Best Regards,

Gavin
WIEN2k user

On 1/6/2023 12:53 AM, naincy Pandit wrote:

RESPECTED SIR


as you told me to install oneAPI so i did it and now it is installed 
but there is a problem with Wien2k previously I have Wien2k 19.01 and 
now I installed Wien2k 21.1.


please tell me how to uninstall the older version so that the new one 
comes into account


again there is a problem that is

/home/naincy/WIEN2k_21.1/lapw1: Command not found.
0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
error: command   /home/naincy/WIEN2k_21.1/lapw1 lapw1.def   failed


 you told me to do ./siteconfig, i already did it but  this comes

* ***
   *           Update a package from its SRC_XX.tar.gz file              *
 ***

Available packages:
ls: No match.
ls: No match.
     Specify the name of the package XX (e.g. lapw1): lapw1
SRC_lapw1.tar.gz does not exist. Please check.

 ***
   *           Update a package from its SRC_XX.tar.gz file              *
 ***

Available packages:
ls: No match.
ls: No match.
     Specify the name of the package XX (e.g. lapw1): *

lapw1.tar.gz is not present only two folders *lapw1para_lapw 
*and* lapw1para_lapw*.*orig*  exists and I m not able to correct it 
please help me out.


On Wed, 4 Jan 2023 at 17:26, Laurence Marks  
wrote:


What you sent describes the issue:

/home/naincy/WIEN2k_21.1/nn: Command not found

That means you did not compile it correctly. Go back and check for
errors during the compilation when you did siteconfig. For
instance, go to /home/Nancy/WIEN_21.1, do ./siteconfig and
recompile just nn (for instance).

Look at the errors.

--
Professor Laurence Marks
Department of Materials Science and Engineering, Northwestern
University
www.numis.northwestern.edu 
"Research is to see what everybody else has seen, and to think
what nobody else has thought" Albert Szent-Györgyi

On Wed, Jan 4, 2023, 04:44 naincy Pandit
 wrote:

Dear Prof. Blaha sir and Wien2k users,


  i am working with Wien2k_21.1 version with Ubuntu 22.04 with oneAPI 
installed recently after installation i m geeting this type of error

  stop error
  
error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed

0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
/home/naincy/WIEN2k_21.1/nn: Command not found.
  next is nn
fileBaZrS3.struct_setrmt   generated
atom  Z   RMT-max   RMT
Use of uninitialized value $rmt[3] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 41.
Use of uninitialized value $rmt[2] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 32.
Use of uninitialized value $rmt[1] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 19.
Use of uninitialized value $rmt[0] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 10.
readline() on closed filehandle NN at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 163.
readline() on closed filehandle NN at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 152.
error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed
0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w

Re: [Wien] lapw1

2023-01-06 Thread Peter Blaha

In addition: You have to tell us exactly what you did !!!


"I installed wien2k 21.1"  does not say anything. Apparently, you 
installed it in a wrong way. How did you install it ? Describe the 
commands you used and also every message the system sends back to you.


And remember: which WIEN2k version you will be using depends on what 
WIENROOT variable you set in your    .bashrc file. This gets updated by 
using "userconfig_lapw".  It seems your "siteconfig" still points to the 
old installation. ???



Am 06.01.2023 um 08:53 schrieb naincy Pandit:

RESPECTED SIR


as you told me to install oneAPI so i did it and now it is installed 
but there is a problem with Wien2k previously I have Wien2k 19.01 and 
now I installed Wien2k 21.1.


please tell me how to uninstall the older version so that the new one 
comes into account


again there is a problem that is

/home/naincy/WIEN2k_21.1/lapw1: Command not found.
0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
error: command   /home/naincy/WIEN2k_21.1/lapw1 lapw1.def   failed


 you told me to do ./siteconfig, i already did it but  this comes

* ***
   *           Update a package from its SRC_XX.tar.gz file              *
 ***

Available packages:
ls: No match.
ls: No match.
     Specify the name of the package XX (e.g. lapw1): lapw1
SRC_lapw1.tar.gz does not exist. Please check.

 ***
   *           Update a package from its SRC_XX.tar.gz file              *
 ***

Available packages:
ls: No match.
ls: No match.
     Specify the name of the package XX (e.g. lapw1): *

lapw1.tar.gz is not present only two folders *lapw1para_lapw 
*and* lapw1para_lapw*.*orig*  exists and I m not able to correct it 
please help me out.


On Wed, 4 Jan 2023 at 17:26, Laurence Marks  
wrote:


What you sent describes the issue:

/home/naincy/WIEN2k_21.1/nn: Command not found

That means you did not compile it correctly. Go back and check for
errors during the compilation when you did siteconfig. For
instance, go to /home/Nancy/WIEN_21.1, do ./siteconfig and
recompile just nn (for instance).

Look at the errors.

--
Professor Laurence Marks
Department of Materials Science and Engineering, Northwestern
University
www.numis.northwestern.edu 
"Research is to see what everybody else has seen, and to think
what nobody else has thought" Albert Szent-Györgyi

On Wed, Jan 4, 2023, 04:44 naincy Pandit
 wrote:

Dear Prof. Blaha sir and Wien2k users,


  i am working with Wien2k_21.1 version with Ubuntu 22.04 with oneAPI 
installed recently after installation i m geeting this type of error

  stop error
  
error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed

0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
/home/naincy/WIEN2k_21.1/nn: Command not found.
  next is nn
fileBaZrS3.struct_setrmt   generated
atom  Z   RMT-max   RMT
Use of uninitialized value $rmt[3] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 41.
Use of uninitialized value $rmt[2] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 32.
Use of uninitialized value $rmt[1] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 19.
Use of uninitialized value $rmt[0] in sprintf at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 10.
readline() on closed filehandle NN at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 163.
readline() on closed filehandle NN at 
/home/naincy/WIEN2k_21.1/setrmt_lapw line 152.
error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed
0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
/home/naincy/WIEN2k_21.1/nn: Command not found.

i tried to solve my problem using this link


https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg07912.html

also tried thishttps://www.youtube.com/watch?v=nify81ZbzkU

but it didnot worked.

please guide me and give your valueable response.

___
Wien mailing list
Wien@zeus.theochem.tuwien.ac.at
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
SEARCH the MAILING-LIST at:
http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html

___
Wien mailing list
Wien@zeus.theochem.tuwien.ac.at
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
SEARCH the MAILING-LIST at:
http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html



Re: [Wien] lapw1

2023-01-06 Thread Laurence Marks
Please carefully read the section on installing Wien2k in the user guide.

Then read it again, and ensure that you understand it.

Read it a third time, then install.

You have to stop sending out emails for everything, you need to do some
work yourself to understand. For instance, I see that you also posted your
first NaN message to a general Ubuntu list, and they blocked it as
irrelevant.

--
Professor Laurence Marks
Department of Materials Science and Engineering, Northwestern University
www.numis.northwestern.edu
"Research is to see what everybody else has seen, and to think what nobody
else has thought" Albert Szent-Györgyi

On Fri, Jan 6, 2023, 01:53 naincy Pandit  wrote:

> RESPECTED SIR
>
>
> as you told me to install oneAPI so i did it and now it is installed but
> there is a problem with Wien2k previously I have Wien2k 19.01 and now I
> installed Wien2k 21.1.
>
> please tell me how to uninstall the older version so that the new one
> comes into account
>
> again there is a problem that is
>
> /home/naincy/WIEN2k_21.1/lapw1: Command not found.
> 0.000u 0.000s 0:00.00 0.0%0+0k 0+0io 0pf+0w
> error: command   /home/naincy/WIEN2k_21.1/lapw1 lapw1.def   failed
>
>
>
>  you told me to do ./siteconfig, i already did it but  this comes
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> *
>  ***
>  *   Update a package from its SRC_XX.tar.gz file  *
>  ***
>  Available packages:ls: No match.ls: No match. Specify the name of the
> package XX (e.g. lapw1): lapw1SRC_lapw1.tar.gz does not exist. Please
> check.
>  ***
>  *   Update a package from its SRC_XX.tar.gz file  *
>  ***
>  Available packages:ls: No match.ls: No match. Specify the name of the
> package XX (e.g. lapw1): *
>
> lapw1.tar.gz is not present only two folders *lapw1para_lapw *and
> * lapw1para_lapw*.*orig*  exists and I m not able to correct it please
> help me out.
>
> On Wed, 4 Jan 2023 at 17:26, Laurence Marks 
> wrote:
>
>> What you sent describes the issue:
>>
>> /home/naincy/WIEN2k_21.1/nn: Command not found
>>
>> That means you did not compile it correctly. Go back and check for errors
>> during the compilation when you did siteconfig. For instance, go to
>> /home/Nancy/WIEN_21.1, do ./siteconfig and recompile just nn (for instance).
>>
>> Look at the errors.
>>
>> --
>> Professor Laurence Marks
>> Department of Materials Science and Engineering, Northwestern University
>> www.numis.northwestern.edu
>> "Research is to see what everybody else has seen, and to think what
>> nobody else has thought" Albert Szent-Györgyi
>>
>> On Wed, Jan 4, 2023, 04:44 naincy Pandit 
>> wrote:
>>
>>> Dear Prof. Blaha sir and Wien2k users,
>>>
>>>
>>>  i am working with Wien2k_21.1 version with Ubuntu 22.04 with oneAPI 
>>> installed recently after installation i m geeting this type of error
>>>
>>>  stop error
>>>
>>> error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed
>>> 0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
>>> /home/naincy/WIEN2k_21.1/nn: Command not found.
>>>  next is nn
>>> fileBaZrS3.struct_setrmt   generated
>>> atom  Z   RMT-max   RMT
>>> Use of uninitialized value $rmt[3] in sprintf at 
>>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 41.
>>> Use of uninitialized value $rmt[2] in sprintf at 
>>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 32.
>>> Use of uninitialized value $rmt[1] in sprintf at 
>>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 19.
>>> Use of uninitialized value $rmt[0] in sprintf at 
>>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 10.
>>> readline() on closed filehandle NN at /home/naincy/WIEN2k_21.1/setrmt_lapw 
>>> line 163.
>>> readline() on closed filehandle NN at /home/naincy/WIEN2k_21.1/setrmt_lapw 
>>> line 152.
>>> error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed
>>> 0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
>>> /home/naincy/WIEN2k_21.1/nn: Command not found.
>>>
>>> i tried to solve my problem using this link
>>>
>>> https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg07912.html
>>>
>>> also tried this https://www.youtube.com/watch?v=nify81ZbzkU
>>>
>>> but it didnot worked.
>>>
>>>
>>> please guide me and give your valueable response.
>>>
>>>
>>> ___
>>> Wien mailing list
>>> Wien@zeus.theochem.tuwien.ac.at
>>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>>> SEARCH the MAILING-LIST at:
>>> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>>>
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>> SEARCH the MAILING-LIST at:
>> 

Re: [Wien] lapw1

2023-01-05 Thread naincy Pandit
RESPECTED SIR


as you told me to install oneAPI so i did it and now it is installed but
there is a problem with Wien2k previously I have Wien2k 19.01 and now I
installed Wien2k 21.1.

please tell me how to uninstall the older version so that the new one comes
into account

again there is a problem that is

/home/naincy/WIEN2k_21.1/lapw1: Command not found.
0.000u 0.000s 0:00.00 0.0%  0+0k 0+0io 0pf+0w
error: command   /home/naincy/WIEN2k_21.1/lapw1 lapw1.def   failed



 you told me to do ./siteconfig, i already did it but  this comes


















*  ***
 *   Update a package from its SRC_XX.tar.gz file  *
 ***
 Available packages:ls: No match.ls: No match. Specify the name of the
package XX (e.g. lapw1): lapw1SRC_lapw1.tar.gz does not exist. Please
check.
 ***
 *   Update a package from its SRC_XX.tar.gz file  *
 ***
 Available packages:ls: No match.ls: No match. Specify the name of the
package XX (e.g. lapw1): *

lapw1.tar.gz is not present only two folders *lapw1para_lapw *and
* lapw1para_lapw*.*orig*  exists and I m not able to correct it please help
me out.

On Wed, 4 Jan 2023 at 17:26, Laurence Marks 
wrote:

> What you sent describes the issue:
>
> /home/naincy/WIEN2k_21.1/nn: Command not found
>
> That means you did not compile it correctly. Go back and check for errors
> during the compilation when you did siteconfig. For instance, go to
> /home/Nancy/WIEN_21.1, do ./siteconfig and recompile just nn (for instance).
>
> Look at the errors.
>
> --
> Professor Laurence Marks
> Department of Materials Science and Engineering, Northwestern University
> www.numis.northwestern.edu
> "Research is to see what everybody else has seen, and to think what nobody
> else has thought" Albert Szent-Györgyi
>
> On Wed, Jan 4, 2023, 04:44 naincy Pandit  wrote:
>
>> Dear Prof. Blaha sir and Wien2k users,
>>
>>
>>  i am working with Wien2k_21.1 version with Ubuntu 22.04 with oneAPI 
>> installed recently after installation i m geeting this type of error
>>
>>  stop error
>>
>> error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed
>> 0.000u 0.000s 0:00.00 0.0%   0+0k 0+0io 0pf+0w
>> /home/naincy/WIEN2k_21.1/nn: Command not found.
>>  next is nn
>> fileBaZrS3.struct_setrmt   generated
>> atom  Z   RMT-max   RMT
>> Use of uninitialized value $rmt[3] in sprintf at 
>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 41.
>> Use of uninitialized value $rmt[2] in sprintf at 
>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 32.
>> Use of uninitialized value $rmt[1] in sprintf at 
>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 19.
>> Use of uninitialized value $rmt[0] in sprintf at 
>> /home/naincy/WIEN2k_21.1/setrmt_lapw line 249,  line 10.
>> readline() on closed filehandle NN at /home/naincy/WIEN2k_21.1/setrmt_lapw 
>> line 163.
>> readline() on closed filehandle NN at /home/naincy/WIEN2k_21.1/setrmt_lapw 
>> line 152.
>> error: command   /home/naincy/WIEN2k_21.1/nn nn.def   failed
>> 0.000u 0.000s 0:00.00 0.0%   0+0k 0+0io 0pf+0w
>> /home/naincy/WIEN2k_21.1/nn: Command not found.
>>
>> i tried to solve my problem using this link
>>
>> https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg07912.html
>>
>> also tried this https://www.youtube.com/watch?v=nify81ZbzkU
>>
>> but it didnot worked.
>>
>>
>> please guide me and give your valueable response.
>>
>>
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>> SEARCH the MAILING-LIST at:
>> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>>
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>
___
Wien mailing list
Wien@zeus.theochem.tuwien.ac.at
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
SEARCH the MAILING-LIST at:  
http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html


Re: [Wien] LAPW1 error

2020-10-05 Thread Laurence Marks
Which version of ifort (do ifort -version)? I know there is a bug with some
2017 and -assume buffered_io that effects the mixer. It might be connected,
or not.

Ifort can be buggy, but it is faster than gfortran with Intel CPUs. It is
good to keep more than one version so one can regress to check problems.
Also the Intel IMPI is buggy with a memory leak that was only recently
fixed.

_
Professor Laurence Marks
"Research is to see what everybody else has seen, and to think what nobody
else has thought", Albert Szent-Gyorgi
www.numis.northwestern.edu

On Mon, Oct 5, 2020, 07:23 Israel Omar Perez Lopez 
wrote:

> Hi
>
> That same problem happens to me with version 19.1 and 19.2 for some basic
> structures (for instance Li Im-3m) using ifort 2018, that doesn't happen
> with gfortran for version 18 or 19. I do not know why. But when it happens,
> I use the .machines file and set the omp_global to 1 and run in parallel.
> The error no longer appears. Apparently, there is a problem with the
> OMP_NUM_THREADS variable. If during installation of Wien2k the system
> detects 2 cores, but you set it 4 or 8, those kinds of errors show up. In
> my case, I have 4 cores in a laptop. If I set it to 4 the problem shows up
> every time a SCF is executed. Then I set to 2 and works fine for most
> structures but in some fails. In those cases I create the .machines and set
> omp_global to 1 and no error is issued.
>
> Hope this helps
>
> Dr. Israel Pérez
>
> Institute of Engineering and Technology
>
> Department of Physics and Mathematics,
>
> Universidad Autónoma de Ciudad Juárez
>
> Av. del Charro 450 Nte., Col. Partido Romero,
>
> Ciudad Juárez, Juarez Chihuahua. Mexico C. P. 32310
>
> Tel: +52 (656) 688 4887
>
>
> National Council of Science and Technology
>
> Insurgentes Sur No. 1582,
>
> Col. Crédito Constructor,  C.P. 03940
>
> Del. Benito Juárez, México D. F.
>
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Re: [Wien] LAPW1 error

2020-10-05 Thread Israel Omar Perez Lopez
Hi

That same problem happens to me with version 19.1 and 19.2 for some basic 
structures (for instance Li Im-3m) using ifort 2018, that doesn't happen with 
gfortran for version 18 or 19. I do not know why. But when it happens, I use 
the .machines file and set the omp_global to 1 and run in parallel. The error 
no longer appears. Apparently, there is a problem with the OMP_NUM_THREADS 
variable. If during installation of Wien2k the system detects 2 cores, but you 
set it 4 or 8, those kinds of errors show up. In my case, I have 4 cores in a 
laptop. If I set it to 4 the problem shows up every time a SCF is executed. 
Then I set to 2 and works fine for most structures but in some fails. In those 
cases I create the .machines and set omp_global to 1 and no error is issued.

Hope this helps

Dr. Israel P?rez

Institute of Engineering and Technology
Department of Physics and Mathematics,
Universidad Aut?noma de Ciudad Ju?rez
Av. del Charro 450 Nte., Col. Partido Romero,
Ciudad Ju?rez, Juarez Chihuahua. Mexico C. P. 32310
Tel: +52 (656) 688 4887

National Council of Science and Technology
Insurgentes Sur No. 1582,
Col. Cr?dito Constructor,  C.P. 03940
Del. Benito Ju?rez, M?xico D. F.

From: Wien  on behalf of Peter Blaha 

Sent: Sunday, October 4, 2020 1:38 PM
To: wien@zeus.theochem.tuwien.ac.at 
Subject: Re: [Wien] LAPW1 error

How do you compile wien2k ?

ifort or gfortran ? Which version ?

Could it be that your compiler was upgraded and you must recompile ?

In any case recompile, maybe with -O1 or even -O0 -C

Am 04.10.2020 um 16:32 schrieb Riyajul Islam:
> I did search in the wien2k mailing list. The suggestions given there is
> related to case.struct and case.in1 files.
>
> On Sun, 4 Oct 2020, 7:59 pm Tran, Fabien,  <mailto:fabien.t...@tuwien.ac.at>> wrote:
>
> If not already done, also search for problems/solutions related to
> SECLR4, POTRF, or Scalapack/LAPACK in the WIEN2k mailing list.
>
>
> 
> *From:* Wien  <mailto:wien-boun...@zeus.theochem.tuwien.ac.at>> on behalf of
> Riyajul Islam mailto:riyaju...@gmail.com>>
> *Sent:* Sunday, October 4, 2020 4:25 PM
>     *To:* A Mailing list for WIEN2k users
> *Subject:* Re: [Wien] LAPW1 error
> I have tried many times in new directories. Most probably i have to
> install scalapack/lapack and recompile wien2k again.
>
> On Sun, 4 Oct 2020, 7:48 pm Tran, Fabien,  <mailto:fabien.t...@tuwien.ac.at>> wrote:
>
> As I said, it works for me. Using your first struct file and
> executing
> init_lapw -b -sp
> runsp_lapw -ec 0.0001 -cc 0.0001 -NI
> the calculation finishes properly.
> Is it really not working if you follow this same procedure in a
> new directory?
> If not, maybe there is a problem/bug with your installed
> Scalapack/LAPACK library?
>
>
> From: Wien  <mailto:wien-boun...@zeus.theochem.tuwien.ac.at>> on behalf of
> Riyajul Islam mailto:riyaju...@gmail.com>>
> Sent: Sunday, October 4, 2020 3:43 PM
> To: A Mailing list for WIEN2k users
> Subject: Re: [Wien] LAPW1 error
>
>
> It crashes during the 1st iteration. Error occurs in
> non-parallel calculation also. I'm using the 19.2 version of
> wien2k. I ran other structures and it works fine.
>
>
> On Sun, 4 Oct 2020, 6:42 pm Tran, Fabien,
> mailto:fabien.t...@tuwien.ac.at>> wrote:
>More questions:
> At which iteration is it crashing? At the first one or not?
> Is it crashing also in non-parallel calculation?
> Which WIEN2k version are you using?
>
> One remark:
> This second structure corresponds to FeNi, while the first one
> was for Fe2Ni.
>
>
> From: Wien  <mailto:wien-boun...@zeus.theochem.tuwien.ac.at>> on behalf of
> Riyajul Islam mailto:riyaju...@gmail.com>>
> Sent: Sunday, October 4, 2020 2:58 PM
> To: A Mailing list for WIEN2k users
> Subject: Re: [Wien] LAPW1 error
>
> Calculations details
> spin-polarized
> PBE functional
> RKmax= changed from 5-9
> After initialization, I tried running the command runsp_lapw -p
> -ec 0.0001 -cc 0.0001 -NI
>
> I tried with another bct structure of FeNi ( case.struct and
> case.in1 files are attached), mentioned in the
> paper 10.1103/PhysRevB.90.014402
>
> On Sun, 4 Oct 2020 at 18:13, Tran, Fabien
> mailto:fabien.t...@tuwien.ac.at>> wrote:
>Hi,
>

Re: [Wien] LAPW1 error

2020-10-04 Thread Peter Blaha

How do you compile wien2k ?

ifort or gfortran ? Which version ?

Could it be that your compiler was upgraded and you must recompile ?

In any case recompile, maybe with -O1 or even -O0 -C

Am 04.10.2020 um 16:32 schrieb Riyajul Islam:
I did search in the wien2k mailing list. The suggestions given there is 
related to case.struct and case.in1 files.


On Sun, 4 Oct 2020, 7:59 pm Tran, Fabien, <mailto:fabien.t...@tuwien.ac.at>> wrote:


If not already done, also search for problems/solutions related to
SECLR4, POTRF, or Scalapack/LAPACK in the WIEN2k mailing list.



*From:* Wien mailto:wien-boun...@zeus.theochem.tuwien.ac.at>> on behalf of
Riyajul Islam mailto:riyaju...@gmail.com>>
*Sent:* Sunday, October 4, 2020 4:25 PM
*To:* A Mailing list for WIEN2k users
    *Subject:* Re: [Wien] LAPW1 error
I have tried many times in new directories. Most probably i have to
install scalapack/lapack and recompile wien2k again.

On Sun, 4 Oct 2020, 7:48 pm Tran, Fabien, mailto:fabien.t...@tuwien.ac.at>> wrote:

As I said, it works for me. Using your first struct file and
executing
init_lapw -b -sp
runsp_lapw -ec 0.0001 -cc 0.0001 -NI
the calculation finishes properly.
Is it really not working if you follow this same procedure in a
new directory?
If not, maybe there is a problem/bug with your installed
Scalapack/LAPACK library?


From: Wien mailto:wien-boun...@zeus.theochem.tuwien.ac.at>> on behalf of
Riyajul Islam mailto:riyaju...@gmail.com>>
Sent: Sunday, October 4, 2020 3:43 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error


It crashes during the 1st iteration. Error occurs in
non-parallel calculation also. I'm using the 19.2 version of
wien2k. I ran other structures and it works fine.


On Sun, 4 Oct 2020, 6:42 pm Tran, Fabien,
mailto:fabien.t...@tuwien.ac.at>> wrote:
   More questions:
At which iteration is it crashing? At the first one or not?
Is it crashing also in non-parallel calculation?
Which WIEN2k version are you using?

One remark:
This second structure corresponds to FeNi, while the first one
was for Fe2Ni.


From: Wien mailto:wien-boun...@zeus.theochem.tuwien.ac.at>> on behalf of
Riyajul Islam mailto:riyaju...@gmail.com>>
Sent: Sunday, October 4, 2020 2:58 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error

Calculations details
spin-polarized
PBE functional
RKmax= changed from 5-9
After initialization, I tried running the command runsp_lapw -p
-ec 0.0001 -cc 0.0001 -NI

I tried with another bct structure of FeNi ( case.struct and
case.in1 files are attached), mentioned in the
paper 10.1103/PhysRevB.90.014402

On Sun, 4 Oct 2020 at 18:13, Tran, Fabien
mailto:fabien.t...@tuwien.ac.at>> wrote:
   Hi,

I can not reproduce this error, at least not with default
parameters and PBE functional.
You need to provide more information like the functional,
spin-polarized or non-spin-polarized,
the command that you executed, etc.
Besides, are you sure that your structure is correct? It
corresponds to Fe2Ni, which seems very odd.


From: Wien mailto:wien-boun...@zeus.theochem.tuwien.ac.at>> on behalf of
Riyajul Islam mailto:riyaju...@gmail.com>>
Sent: Sunday, October 4, 2020 10:26 AM
To: A Mailing list for WIEN2k users
Subject: [Wien] LAPW1 error

Dear WIEN2k users,
I am trying to run scf on FeNi fct structure. while running I am
getting the error

**  Error in Parallel LAPW1
**  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
**  check ERROR FILES!
  Cholesky INFO =          262
  'SECLR4' - POTRF (Scalapack/LAPACK) failed.

Here I have attached the case.struct and case.in1 files.

Any help would be gratefully appreciated. Many thanks in advance.

Regards

-- 
Riyajul Islam

Ph.D Scholar
National Institute of Technology Nagaland
Chumukedima, Dimapur
Nagaland 797103, India
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Riyajul Islam
Ph.D Scholar
National Institute of 

Re: [Wien] LAPW1 error

2020-10-04 Thread Lyudmila Dobysheva

Riyajul Islam mailto:riyaju...@gmail.com>>
*Sent:* Sunday, October 4, 2020 4:25 PM
I have tried many times in new directories.


Better send the whole init package (without clm files), struct, all .in* 
files, klist-kgen, and so forth (gzipped).


Best wishes
Lyudmila Dobysheva
--
http://ftiudm.ru/content/view/25/103/lang,english/
Physics-Techn.Institute,
Udmurt Federal Research Center, Ural Br. of Rus.Ac.Sci.
426000 Izhevsk Kirov str. 132
Russia
---
Tel. +7 (34I2)43-24-59 (office), +7 (9I2)OI9-795O (home)
Skype: lyuka18 (office), lyuka17 (home)
E-mail: lyuk...@mail.ru (office), lyuk...@gmail.com (home)
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Re: [Wien] LAPW1 error

2020-10-04 Thread Riyajul Islam
I did search in the wien2k mailing list. The suggestions given there is
related to case.struct and case.in1 files.

On Sun, 4 Oct 2020, 7:59 pm Tran, Fabien,  wrote:

> If not already done, also search for problems/solutions related to SECLR4,
> POTRF, or Scalapack/LAPACK in the WIEN2k mailing list.
>
>
> --
> *From:* Wien  on behalf of
> Riyajul Islam 
> *Sent:* Sunday, October 4, 2020 4:25 PM
> *To:* A Mailing list for WIEN2k users
> *Subject:* Re: [Wien] LAPW1 error
>
> I have tried many times in new directories. Most probably i have to
> install scalapack/lapack and recompile wien2k again.
>
> On Sun, 4 Oct 2020, 7:48 pm Tran, Fabien, 
> wrote:
>
>> As I said, it works for me. Using your first struct file and executing
>> init_lapw -b -sp
>> runsp_lapw -ec 0.0001 -cc 0.0001 -NI
>> the calculation finishes properly.
>> Is it really not working if you follow this same procedure in a new
>> directory?
>> If not, maybe there is a problem/bug with your installed Scalapack/LAPACK
>> library?
>>
>>
>> From: Wien  on behalf of
>> Riyajul Islam 
>> Sent: Sunday, October 4, 2020 3:43 PM
>> To: A Mailing list for WIEN2k users
>> Subject: Re: [Wien] LAPW1 error
>>
>>
>> It crashes during the 1st iteration. Error occurs in non-parallel
>> calculation also. I'm using the 19.2 version of wien2k. I ran other
>> structures and it works fine.
>>
>>
>> On Sun, 4 Oct 2020, 6:42 pm Tran, Fabien, 
>> wrote:
>>   More questions:
>> At which iteration is it crashing? At the first one or not?
>> Is it crashing also in non-parallel calculation?
>> Which WIEN2k version are you using?
>>
>> One remark:
>> This second structure corresponds to FeNi, while the first one was for
>> Fe2Ni.
>>
>>
>> From: Wien  on behalf of
>> Riyajul Islam 
>> Sent: Sunday, October 4, 2020 2:58 PM
>> To: A Mailing list for WIEN2k users
>> Subject: Re: [Wien] LAPW1 error
>>
>> Calculations details
>> spin-polarized
>> PBE functional
>> RKmax= changed from 5-9
>> After initialization, I tried running the command runsp_lapw -p -ec
>> 0.0001 -cc 0.0001 -NI
>>
>> I tried with another bct structure of FeNi ( case.struct and case.in1
>> files are attached), mentioned in the paper 10.1103/PhysRevB.90.014402
>>
>> On Sun, 4 Oct 2020 at 18:13, Tran, Fabien 
>> wrote:
>>   Hi,
>>
>> I can not reproduce this error, at least not with default parameters and
>> PBE functional.
>> You need to provide more information like the functional, spin-polarized
>> or non-spin-polarized,
>> the command that you executed, etc.
>> Besides, are you sure that your structure is correct? It corresponds to
>> Fe2Ni, which seems very odd.
>>
>>
>> From: Wien  on behalf of
>> Riyajul Islam 
>> Sent: Sunday, October 4, 2020 10:26 AM
>> To: A Mailing list for WIEN2k users
>> Subject: [Wien] LAPW1 error
>>
>> Dear WIEN2k users,
>> I am trying to run scf on FeNi fct structure. while running I am getting
>> the error
>>
>> **  Error in Parallel LAPW1
>> **  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
>> **  check ERROR FILES!
>>  Cholesky INFO =  262
>>  'SECLR4' - POTRF (Scalapack/LAPACK) failed.
>>
>> Here I have attached the case.struct and case.in1 files.
>>
>> Any help would be gratefully appreciated. Many thanks in advance.
>>
>> Regards
>>
>> --
>> Riyajul Islam
>> Ph.D Scholar
>> National Institute of Technology Nagaland
>> Chumukedima, Dimapur
>> Nagaland 797103, India
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>> SEARCH the MAILING-LIST at:
>> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>>
>>
>>
>>  --
>>
>>
>>
>>
>> Riyajul Islam
>> Ph.D Scholar
>> National Institute of Technology Nagaland
>>
>>
>> Chumukedima, Dimapur
>> Nagaland 797103, India
>>
>>
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>> SEARCH the MAILING-LIST at:
>> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>>
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
>> SEARCH the MAILING-LIST at:
>> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>>
> ___
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Re: [Wien] LAPW1 error

2020-10-04 Thread Tran, Fabien
If not already done, also search for problems/solutions related to SECLR4, 
POTRF, or Scalapack/LAPACK in the WIEN2k mailing list.



From: Wien  on behalf of Riyajul Islam 

Sent: Sunday, October 4, 2020 4:25 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error

I have tried many times in new directories. Most probably i have to install 
scalapack/lapack and recompile wien2k again.

On Sun, 4 Oct 2020, 7:48 pm Tran, Fabien, 
mailto:fabien.t...@tuwien.ac.at>> wrote:
As I said, it works for me. Using your first struct file and executing
init_lapw -b -sp
runsp_lapw -ec 0.0001 -cc 0.0001 -NI
the calculation finishes properly.
Is it really not working if you follow this same procedure in a new directory?
If not, maybe there is a problem/bug with your installed Scalapack/LAPACK 
library?


From: Wien 
mailto:wien-boun...@zeus.theochem.tuwien.ac.at>>
 on behalf of Riyajul Islam mailto:riyaju...@gmail.com>>
Sent: Sunday, October 4, 2020 3:43 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error


It crashes during the 1st iteration. Error occurs in non-parallel calculation 
also. I'm using the 19.2 version of wien2k. I ran other structures and it works 
fine.


On Sun, 4 Oct 2020, 6:42 pm Tran, Fabien, 
mailto:fabien.t...@tuwien.ac.at>> wrote:
  More questions:
At which iteration is it crashing? At the first one or not?
Is it crashing also in non-parallel calculation?
Which WIEN2k version are you using?

One remark:
This second structure corresponds to FeNi, while the first one was for Fe2Ni.


From: Wien 
mailto:wien-boun...@zeus.theochem.tuwien.ac.at>>
 on behalf of Riyajul Islam mailto:riyaju...@gmail.com>>
Sent: Sunday, October 4, 2020 2:58 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error

Calculations details
spin-polarized
PBE functional
RKmax= changed from 5-9
After initialization, I tried running the command runsp_lapw -p -ec 0.0001 -cc 
0.0001 -NI

I tried with another bct structure of FeNi ( case.struct and case.in1 files are 
attached), mentioned in the paper 10.1103/PhysRevB.90.014402

On Sun, 4 Oct 2020 at 18:13, Tran, Fabien 
mailto:fabien.t...@tuwien.ac.at>> wrote:
  Hi,

I can not reproduce this error, at least not with default parameters and PBE 
functional.
You need to provide more information like the functional, spin-polarized or 
non-spin-polarized,
the command that you executed, etc.
Besides, are you sure that your structure is correct? It corresponds to Fe2Ni, 
which seems very odd.


From: Wien 
mailto:wien-boun...@zeus.theochem.tuwien.ac.at>>
 on behalf of Riyajul Islam mailto:riyaju...@gmail.com>>
Sent: Sunday, October 4, 2020 10:26 AM
To: A Mailing list for WIEN2k users
Subject: [Wien] LAPW1 error

Dear WIEN2k users,
I am trying to run scf on FeNi fct structure. while running I am getting the 
error

**  Error in Parallel LAPW1
**  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
**  check ERROR FILES!
 Cholesky INFO =  262
 'SECLR4' - POTRF (Scalapack/LAPACK) failed.

Here I have attached the case.struct and case.in1 files.

Any help would be gratefully appreciated. Many thanks in advance.

Regards

--
Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland
Chumukedima, Dimapur
Nagaland 797103, India
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 --




Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland


Chumukedima, Dimapur
Nagaland 797103, India


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Re: [Wien] LAPW1 error

2020-10-04 Thread Riyajul Islam
I have tried many times in new directories. Most probably i have to install
scalapack/lapack and recompile wien2k again.

On Sun, 4 Oct 2020, 7:48 pm Tran, Fabien,  wrote:

> As I said, it works for me. Using your first struct file and executing
> init_lapw -b -sp
> runsp_lapw -ec 0.0001 -cc 0.0001 -NI
> the calculation finishes properly.
> Is it really not working if you follow this same procedure in a new
> directory?
> If not, maybe there is a problem/bug with your installed Scalapack/LAPACK
> library?
>
>
> From: Wien  on behalf of Riyajul
> Islam 
> Sent: Sunday, October 4, 2020 3:43 PM
> To: A Mailing list for WIEN2k users
> Subject: Re: [Wien] LAPW1 error
>
>
> It crashes during the 1st iteration. Error occurs in non-parallel
> calculation also. I'm using the 19.2 version of wien2k. I ran other
> structures and it works fine.
>
>
> On Sun, 4 Oct 2020, 6:42 pm Tran, Fabien, 
> wrote:
>   More questions:
> At which iteration is it crashing? At the first one or not?
> Is it crashing also in non-parallel calculation?
> Which WIEN2k version are you using?
>
> One remark:
> This second structure corresponds to FeNi, while the first one was for
> Fe2Ni.
>
>
> From: Wien  on behalf of Riyajul
> Islam 
> Sent: Sunday, October 4, 2020 2:58 PM
> To: A Mailing list for WIEN2k users
> Subject: Re: [Wien] LAPW1 error
>
> Calculations details
> spin-polarized
> PBE functional
> RKmax= changed from 5-9
> After initialization, I tried running the command runsp_lapw -p -ec 0.0001
> -cc 0.0001 -NI
>
> I tried with another bct structure of FeNi ( case.struct and case.in1
> files are attached), mentioned in the paper 10.1103/PhysRevB.90.014402
>
> On Sun, 4 Oct 2020 at 18:13, Tran, Fabien 
> wrote:
>   Hi,
>
> I can not reproduce this error, at least not with default parameters and
> PBE functional.
> You need to provide more information like the functional, spin-polarized
> or non-spin-polarized,
> the command that you executed, etc.
> Besides, are you sure that your structure is correct? It corresponds to
> Fe2Ni, which seems very odd.
>
>
> From: Wien  on behalf of Riyajul
> Islam 
> Sent: Sunday, October 4, 2020 10:26 AM
> To: A Mailing list for WIEN2k users
> Subject: [Wien] LAPW1 error
>
> Dear WIEN2k users,
> I am trying to run scf on FeNi fct structure. while running I am getting
> the error
>
> **  Error in Parallel LAPW1
> **  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
> **  check ERROR FILES!
>  Cholesky INFO =  262
>  'SECLR4' - POTRF (Scalapack/LAPACK) failed.
>
> Here I have attached the case.struct and case.in1 files.
>
> Any help would be gratefully appreciated. Many thanks in advance.
>
> Regards
>
> --
> Riyajul Islam
> Ph.D Scholar
> National Institute of Technology Nagaland
> Chumukedima, Dimapur
> Nagaland 797103, India
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>
>
>
>  --
>
>
>
>
> Riyajul Islam
> Ph.D Scholar
> National Institute of Technology Nagaland
>
>
> Chumukedima, Dimapur
> Nagaland 797103, India
>
>
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Re: [Wien] LAPW1 error

2020-10-04 Thread Tran, Fabien
As I said, it works for me. Using your first struct file and executing
init_lapw -b -sp
runsp_lapw -ec 0.0001 -cc 0.0001 -NI
the calculation finishes properly.
Is it really not working if you follow this same procedure in a new directory?
If not, maybe there is a problem/bug with your installed Scalapack/LAPACK 
library?


From: Wien  on behalf of Riyajul Islam 

Sent: Sunday, October 4, 2020 3:43 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error
  

It crashes during the 1st iteration. Error occurs in non-parallel calculation 
also. I'm using the 19.2 version of wien2k. I ran other structures and it works 
fine.


On Sun, 4 Oct 2020, 6:42 pm Tran, Fabien,  wrote:
  More questions:
At which iteration is it crashing? At the first one or not?
Is it crashing also in non-parallel calculation?
Which WIEN2k version are you using?

One remark:
This second structure corresponds to FeNi, while the first one was for Fe2Ni.


From: Wien  on behalf of Riyajul Islam 

Sent: Sunday, October 4, 2020 2:58 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error
  
Calculations details 
spin-polarized
PBE functional
RKmax= changed from 5-9
After initialization, I tried running the command runsp_lapw -p -ec 0.0001 -cc 
0.0001 -NI

I tried with another bct structure of FeNi ( case.struct and case.in1 files are 
attached), mentioned in the paper 10.1103/PhysRevB.90.014402

On Sun, 4 Oct 2020 at 18:13, Tran, Fabien  wrote:
  Hi,

I can not reproduce this error, at least not with default parameters and PBE 
functional.
You need to provide more information like the functional, spin-polarized or 
non-spin-polarized,
the command that you executed, etc. 
Besides, are you sure that your structure is correct? It corresponds to Fe2Ni, 
which seems very odd.


From: Wien  on behalf of Riyajul Islam 

Sent: Sunday, October 4, 2020 10:26 AM
To: A Mailing list for WIEN2k users
Subject: [Wien] LAPW1 error
  
Dear WIEN2k users,
I am trying to run scf on FeNi fct structure. while running I am getting the 
error

**  Error in Parallel LAPW1
**  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
**  check ERROR FILES!
 Cholesky INFO =          262
 'SECLR4' - POTRF (Scalapack/LAPACK) failed.

Here I have attached the case.struct and case.in1 files.

Any help would be gratefully appreciated. Many thanks in advance.

Regards

-- 
Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland
Chumukedima, Dimapur
Nagaland 797103, India
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 -- 




Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland


Chumukedima, Dimapur
Nagaland 797103, India 


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Re: [Wien] LAPW1 error

2020-10-04 Thread Riyajul Islam
It crashes during the 1st iteration. Error occurs in non-parallel
calculation also. I'm using the 19.2 version of wien2k. I ran other
structures and it works fine.

On Sun, 4 Oct 2020, 6:42 pm Tran, Fabien,  wrote:

> More questions:
> At which iteration is it crashing? At the first one or not?
> Is it crashing also in non-parallel calculation?
> Which WIEN2k version are you using?
>
> One remark:
> This second structure corresponds to FeNi, while the first one was for
> Fe2Ni.
>
>
> From: Wien  on behalf of Riyajul
> Islam 
> Sent: Sunday, October 4, 2020 2:58 PM
> To: A Mailing list for WIEN2k users
> Subject: Re: [Wien] LAPW1 error
>
> Calculations details
> spin-polarized
> PBE functional
> RKmax= changed from 5-9
> After initialization, I tried running the command runsp_lapw -p -ec 0.0001
> -cc 0.0001 -NI
>
> I tried with another bct structure of FeNi ( case.struct and case.in1
> files are attached), mentioned in the paper 10.1103/PhysRevB.90.014402
>
> On Sun, 4 Oct 2020 at 18:13, Tran, Fabien 
> wrote:
>   Hi,
>
> I can not reproduce this error, at least not with default parameters and
> PBE functional.
> You need to provide more information like the functional, spin-polarized
> or non-spin-polarized,
> the command that you executed, etc.
> Besides, are you sure that your structure is correct? It corresponds to
> Fe2Ni, which seems very odd.
>
>
> From: Wien  on behalf of Riyajul
> Islam 
> Sent: Sunday, October 4, 2020 10:26 AM
> To: A Mailing list for WIEN2k users
> Subject: [Wien] LAPW1 error
>
> Dear WIEN2k users,
> I am trying to run scf on FeNi fct structure. while running I am getting
> the error
>
> **  Error in Parallel LAPW1
> **  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
> **  check ERROR FILES!
>  Cholesky INFO =  262
>  'SECLR4' - POTRF (Scalapack/LAPACK) failed.
>
> Here I have attached the case.struct and case.in1 files.
>
> Any help would be gratefully appreciated. Many thanks in advance.
>
> Regards
>
> --
> Riyajul Islam
> Ph.D Scholar
> National Institute of Technology Nagaland
> Chumukedima, Dimapur
> Nagaland 797103, India
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
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> SEARCH the MAILING-LIST at:
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>
>
>
>  --
>
>
>
>
> Riyajul Islam
> Ph.D Scholar
> National Institute of Technology Nagaland
>
>
> Chumukedima, Dimapur
> Nagaland 797103, India
>
>
> ___
> Wien mailing list
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Re: [Wien] LAPW1 error

2020-10-04 Thread Tran, Fabien
More questions:
At which iteration is it crashing? At the first one or not?
Is it crashing also in non-parallel calculation?
Which WIEN2k version are you using?

One remark:
This second structure corresponds to FeNi, while the first one was for Fe2Ni.


From: Wien  on behalf of Riyajul Islam 

Sent: Sunday, October 4, 2020 2:58 PM
To: A Mailing list for WIEN2k users
Subject: Re: [Wien] LAPW1 error
  
Calculations details 
spin-polarized
PBE functional
RKmax= changed from 5-9
After initialization, I tried running the command runsp_lapw -p -ec 0.0001 -cc 
0.0001 -NI

I tried with another bct structure of FeNi ( case.struct and case.in1 files are 
attached), mentioned in the paper 10.1103/PhysRevB.90.014402

On Sun, 4 Oct 2020 at 18:13, Tran, Fabien  wrote:
  Hi,

I can not reproduce this error, at least not with default parameters and PBE 
functional.
You need to provide more information like the functional, spin-polarized or 
non-spin-polarized,
the command that you executed, etc. 
Besides, are you sure that your structure is correct? It corresponds to Fe2Ni, 
which seems very odd.


From: Wien  on behalf of Riyajul Islam 

Sent: Sunday, October 4, 2020 10:26 AM
To: A Mailing list for WIEN2k users
Subject: [Wien] LAPW1 error
  
Dear WIEN2k users,
I am trying to run scf on FeNi fct structure. while running I am getting the 
error

**  Error in Parallel LAPW1
**  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
**  check ERROR FILES!
 Cholesky INFO =          262
 'SECLR4' - POTRF (Scalapack/LAPACK) failed.

Here I have attached the case.struct and case.in1 files.

Any help would be gratefully appreciated. Many thanks in advance.

Regards

-- 
Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland
Chumukedima, Dimapur
Nagaland 797103, India
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 -- 




Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland


Chumukedima, Dimapur
Nagaland 797103, India 


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Re: [Wien] LAPW1 error

2020-10-04 Thread Riyajul Islam
Calculations details
spin-polarized
PBE functional
RKmax= changed from 5-9
After initialization, I tried running the command *runsp_lapw -p -ec 0.0001
-cc 0.0001 -NI*

I tried with another bct structure of FeNi ( case.struct and case.in1
files are attached), mentioned in the paper *10.1103/PhysRevB.90.014402*



On Sun, 4 Oct 2020 at 18:13, Tran, Fabien  wrote:

> Hi,
>
> I can not reproduce this error, at least not with default parameters and
> PBE functional.
> You need to provide more information like the functional, spin-polarized
> or non-spin-polarized,
> the command that you executed, etc.
> Besides, are you sure that your structure is correct? It corresponds to
> Fe2Ni, which seems very odd.
>
>
> From: Wien  on behalf of Riyajul
> Islam 
> Sent: Sunday, October 4, 2020 10:26 AM
> To: A Mailing list for WIEN2k users
> Subject: [Wien] LAPW1 error
>
> Dear WIEN2k users,
> I am trying to run scf on FeNi fct structure. while running I am getting
> the error
>
> **  Error in Parallel LAPW1
> **  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
> **  check ERROR FILES!
>  Cholesky INFO =  262
>  'SECLR4' - POTRF (Scalapack/LAPACK) failed.
>
> Here I have attached the case.struct and case.in1 files.
>
> Any help would be gratefully appreciated. Many thanks in advance.
>
> Regards
>
> --
> Riyajul Islam
> Ph.D Scholar
> National Institute of Technology Nagaland
> Chumukedima, Dimapur
> Nagaland 797103, India
> ___
> Wien mailing list
> Wien@zeus.theochem.tuwien.ac.at
> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
> SEARCH the MAILING-LIST at:
> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
>


-- 
Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland
Chumukedima, Dimapur
Nagaland 797103, India


bct_FeNi.struct
Description: Binary data


bct_FeNi.in1
Description: Binary data
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Re: [Wien] LAPW1 error

2020-10-04 Thread Tran, Fabien
Hi,

I can not reproduce this error, at least not with default parameters and PBE 
functional.
You need to provide more information like the functional, spin-polarized or 
non-spin-polarized,
the command that you executed, etc. 
Besides, are you sure that your structure is correct? It corresponds to Fe2Ni, 
which seems very odd.


From: Wien  on behalf of Riyajul Islam 

Sent: Sunday, October 4, 2020 10:26 AM
To: A Mailing list for WIEN2k users
Subject: [Wien] LAPW1 error
  
Dear WIEN2k users,
I am trying to run scf on FeNi fct structure. while running I am getting the 
error

**  Error in Parallel LAPW1
**  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
**  check ERROR FILES!
 Cholesky INFO =          262
 'SECLR4' - POTRF (Scalapack/LAPACK) failed.

Here I have attached the case.struct and case.in1 files.

Any help would be gratefully appreciated. Many thanks in advance.

Regards

-- 
Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland
Chumukedima, Dimapur
Nagaland 797103, India
___
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[Wien] LAPW1 error

2020-10-04 Thread Riyajul Islam
Dear WIEN2k users,
I am trying to run scf on FeNi fct structure. while running I am getting
the error

**  Error in Parallel LAPW1
**  LAPW1 STOPPED at Sun Oct 4 13:53:54 IST 2020
**  check ERROR FILES!
 Cholesky INFO =  262
 'SECLR4' - POTRF (Scalapack/LAPACK) failed.

Here I have attached the case.struct and case.in1 files.

Any help would be gratefully appreciated. Many thanks in advance.

Regards

-- 
Riyajul Islam
Ph.D Scholar
National Institute of Technology Nagaland
Chumukedima, Dimapur
Nagaland 797103, India


FeNi.in1
Description: Binary data


FeNi.struct
Description: Binary data
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[Wien] LAPW1 doesn't show error in parallel calculation

2020-09-09 Thread Lyudmila Dobysheva

09.09.2020 00:01, Peter Blaha wrote:

alias   testerror   'if (! -z \!:1.error) goto error'
you can catch a problem.



Am 08.09.2020 um 20:38 schrieb Yundi Quan:
The simplest way that I can think of is to check whether the 
lawp1.error file is empty or not after executing x lapw1.


On Tue, Sep 8, 2020 at 2:23 PM Rubel, Oleg > wrote:

    I wonder if there is a _simple_ alternative way for sensing an
    error? Also message is not always "X - Error". It can be


Just now I try to make a calculation at supercomputer with a random 
structure for testing, I passed already some problems, but sometimes I 
still meet errors, and there is no nonzero files. I am attaching three 
files:
1. slurm*out, where errors are shown, the first one before lapw0 didn't 
affect, do not know why?, lapw0 was calculated, all output files are 
good. lapw1 was not calculated.


2. *.dayfile I can see that lapw1 was not calculated only by too small 
times:

tesla46(6) 0.006u 0.010s 0.75 2.11%  0+0k 0+0io 0pf+0w
(the next lines are my additional output inserted into lapw1para:
1 t taskset0 exe def_loop.def time srun 0 lapw1 lapw1_1.def)

3. ls-l.output shows that all the *.error files are zero, and the files 
that should be done by lapw1, are absent.


Doesn't matter why the task didn't calculated, but why the 
lapw1*.error's are zero?
I sent for testing run -e lapw1, otherwise it would have come to lapw2 
without stopping.


Best regards
Lyudmila Dobysheva
--
http://ftiudm.ru/content/view/25/103/lang,english/
Physics-Techn.Institute,
Udmurt Federal Research Center, Ural Br. of Rus.Ac.Sci.
426000 Izhevsk Kirov str. 132
Russia
---
Tel. +7 (34I2)43-24-59 (office), +7 (9I2)OI9-795O (home)
Skype: lyuka18 (office), lyuka17 (home)
E-mail: lyuk...@mail.ru (office), lyuk...@gmail.com (home)

DIRECTORY = /misc/home4/u3104/work/orgFeZn/Gold_23l
WIENROOT = /misc/home4/u3104/BIN/WIEN2k-19
SCRATCH = ./
Got 16 cores
nodelist tesla46
tasks_per_node 16
slurmstepd: error: _is_a_lwp: open() /proc/408167/status failed: No such file 
or directory
jobs_per_node 4 because OMP_NUM_THREADS = 4
4 nodes for this job: tesla46 tesla46 tesla46 tesla46
 LAPW0 END
[1]Done  srun -K -N1 -n4 -r0 
/misc/home4/u3104/BIN/WIEN2k-19/lapw0_mpi lapw0.def >> .time00
slurmstepd: error: execve(): 0: No such file or directory
srun: error: apollo17: task 0: Exited with exit code 2
slurmstepd: error: execve(): 2: No such file or directory
srun: error: apollo17: task 0: Exited with exit code 2
slurmstepd: error: execve(): 1: No such file or directory
srun: error: apollo17: task 0: Exited with exit code 2
slurmstepd: error: execve(): 3: No such file or directory
srun: error: apollo17: task 0: Exited with exit code 2
[4]  - Done  ( ( $remote $machine[$p] "cd 
$PWD;$set_OMP_NUM_THREADS;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw 
${def}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f 
.stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% 
.temp1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr 
" )
[3]  + Done  ( ( $remote $machine[$p] "cd 
$PWD;$set_OMP_NUM_THREADS;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw 
${def}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f 
.stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% 
.temp1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr 
" )
[2]  + Done  ( ( $remote $machine[$p] "cd 
$PWD;$set_OMP_NUM_THREADS;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw 
${def}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f 
.stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% 
.temp1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr 
" )
[1]  + Done  ( ( $remote $machine[$p] "cd 
$PWD;$set_OMP_NUM_THREADS;$t $taskset0 $exe ${def}_$loop.def ;fixerror_lapw 
${def}_$loop"; rm -f .lock_$lockfile[$p] ) >& .stdout1_$loop; if ( -f 
.stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop > .temp1_$loop; grep \% 
.temp1_$loop >> .time1_$loop; grep -v \% .temp1_$loop | perl -e "print stderr 
" )
Gold_23l.scf1_1: No such file or directory.

>   stop

Calculating Gold_23l in /misc/home4/u3104/work/orgFeZn/Gold_23l
on tesla46 with PID 408380
using WIEN2k_19.1 (Release 25/6/2019) in /misc/home4/u3104/BIN/WIEN2k-19


start   (Tue Sep  8 18:57:18 +05 2020) with lapw0 (2/99 to go)

cycle 1 (Tue Sep  8 18:57:18 +05 2020)  (2/99 to go)

>   lapw0   -p  (18:57:18) starting parallel lapw0 at Tue Sep  8 18:57:18 +05 
> 2020
 .machine0 : 4 processors
0.056u 0.082s 0:04.65 2.7%  0+0k 16+112io 0pf+0w
>   lapw1  -p   (18:57:23) starting parallel lapw1 at Tue Sep  8 
> 18:57:23 +05 2020
->  starting parallel LAPW1 jobs at Tue Sep  8 18:57:23 +05 2020
running LAPW1 in parallel mode 

Re: [Wien] LAPW1 doesn't show error in parallel calculation

2020-09-09 Thread Peter Blaha
The lapw1.error file are written by lapw1 itself (at the very beginning 
and made to zero length at the end of lapw1.


Of course, if lapw1 cannot be started (maybe because the executable is 
missing,), then there are no error files.


Thus, Laurence's suggestion is a good one and the para scripts can 
already write something into the error files, which should be later on 
overwritten when lapw1 starts.



On 9/9/20 2:57 PM, Laurence Marks wrote:
Unfortunately the structure of *.error files which are zero length when 
the task runs correctly can easily be broken if there is remote 
execution/ssh/mpi which does not work. I think in the cases you sent 
there is sufficient information to debug; I suspect an issue with 
directory names and/or mount.


Suggestion to Peter: perhaps add a "echo Startup Error > 
lapw1[0-2].error" in lapw1[0-2]para to catch this?


_
Professor Laurence Marks
"Research is to see what everybody else has seen, and to think what 
nobody else has thought", Albert Szent-Gyorgi

www.numis.northwestern.edu 

On Wed, Sep 9, 2020, 06:48 Lyudmila Dobysheva > wrote:


09.09.2020 00:01, Peter Blaha wrote:
 > alias   testerror   'if (! -z \!:1.error) goto error'
 > you can catch a problem.

 > Am 08.09.2020 um 20:38 schrieb Yundi Quan:
 >> The simplest way that I can think of is to check whether the
 >> lawp1.error file is empty or not after executing x lapw1.

 >> On Tue, Sep 8, 2020 at 2:23 PM Rubel, Oleg mailto:rub...@mcmaster.ca>
 >> >> wrote:
 >>     I wonder if there is a _simple_ alternative way for sensing an
 >>     error? Also message is not always "X - Error". It can be

Just now I try to make a calculation at supercomputer with a random
structure for testing, I passed already some problems, but sometimes I
still meet errors, and there is no nonzero files. I am attaching three
files:
1. slurm*out, where errors are shown, the first one before lapw0 didn't
affect, do not know why?, lapw0 was calculated, all output files are
good. lapw1 was not calculated.

2. *.dayfile I can see that lapw1 was not calculated only by too small
times:
tesla46(6) 0.006u 0.010s 0.75 2.11%      0+0k 0+0io 0pf+0w
(the next lines are my additional output inserted into lapw1para:
1 t taskset0 exe def_loop.def time srun 0 lapw1 lapw1_1.def)

3. ls-l.output shows that all the *.error files are zero, and the files
that should be done by lapw1, are absent.

Doesn't matter why the task didn't calculated, but why the
lapw1*.error's are zero?
I sent for testing run -e lapw1, otherwise it would have come to lapw2
without stopping.

Best regards
Lyudmila Dobysheva
--

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--

  P.Blaha
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: bl...@theochem.tuwien.ac.atWIEN2k: http://www.wien2k.at
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Re: [Wien] LAPW1 doesn't show error in parallel calculation

2020-09-09 Thread Laurence Marks
Unfortunately the structure of *.error files which are zero length when the
task runs correctly can easily be broken if there is remote
execution/ssh/mpi which does not work. I think in the cases you sent there
is sufficient information to debug; I suspect an issue with directory names
and/or mount.

Suggestion to Peter: perhaps add a "echo Startup Error > lapw1[0-2].error"
in lapw1[0-2]para to catch this?

_
Professor Laurence Marks
"Research is to see what everybody else has seen, and to think what nobody
else has thought", Albert Szent-Gyorgi
www.numis.northwestern.edu

On Wed, Sep 9, 2020, 06:48 Lyudmila Dobysheva  wrote:

> 09.09.2020 00:01, Peter Blaha wrote:
> > alias   testerror   'if (! -z \!:1.error) goto error'
> > you can catch a problem.
>
> > Am 08.09.2020 um 20:38 schrieb Yundi Quan:
> >> The simplest way that I can think of is to check whether the
> >> lawp1.error file is empty or not after executing x lapw1.
>
> >> On Tue, Sep 8, 2020 at 2:23 PM Rubel, Oleg  >> > wrote:
> >> I wonder if there is a _simple_ alternative way for sensing an
> >> error? Also message is not always "X - Error". It can be
>
> Just now I try to make a calculation at supercomputer with a random
> structure for testing, I passed already some problems, but sometimes I
> still meet errors, and there is no nonzero files. I am attaching three
> files:
> 1. slurm*out, where errors are shown, the first one before lapw0 didn't
> affect, do not know why?, lapw0 was calculated, all output files are
> good. lapw1 was not calculated.
>
> 2. *.dayfile I can see that lapw1 was not calculated only by too small
> times:
> tesla46(6) 0.006u 0.010s 0.75 2.11%  0+0k 0+0io 0pf+0w
> (the next lines are my additional output inserted into lapw1para:
> 1 t taskset0 exe def_loop.def time srun 0 lapw1 lapw1_1.def)
>
> 3. ls-l.output shows that all the *.error files are zero, and the files
> that should be done by lapw1, are absent.
>
> Doesn't matter why the task didn't calculated, but why the
> lapw1*.error's are zero?
> I sent for testing run -e lapw1, otherwise it would have come to lapw2
> without stopping.
>
> Best regards
> Lyudmila Dobysheva
> --
>
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[Wien] Lapw1 mpi run problem ( gfortran+openmpi)

2020-04-24 Thread Deyerling , André
Dear WIEN2k users,


I run into the following problem when running WIEN2k in parallel with mpi. 
WIEN2k Version is 19.1, the patches provided by Gavin Abo are installed. 
Elpa/FFTW3/Scalapack are used and compiled with gcc/gfortran mpicc/mpif90. The 
Compilation of

WIEN2k shows no errors.


K-Point parallelization  works fine, WIEN2k is installed on a NFS share on a 
small selfbuild cluster (right now only 4 nodes but will be more if everything 
runs).


The Problem looks like a problem with openmpi, however simple exemplary mpif90 
programs work fine when run in parallel. Something goes wrong with lapw1para.


--

run_lapw -p
STOP  LAPW0 END
[1]Done  /usr/lib64/openmpi/bin/mpirun -x 
LD_LIBRARY_PATH -x PATH -np 2 -machinefile .machine0 
/home/mpiuser/WIEN2k-19.1/lapw0_mpi lapw0.def >> .time00
[node0:1423512:0:1423512] Caught signal 11 (Segmentation fault: address not 
mapped to object at address (nil))
 backtrace 
[node0:1423513:0:1423513] Caught signal 11 (Segmentation fault: address not 
mapped to object at address (nil))
 backtrace 
0  /usr/lib64/libucs.so.0(+0x1b25f) [0x1462b91ad25f]
1  /usr/lib64/libucs.so.0(+0x1b42a) [0x1462b91ad42a]
2  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x4482df]
3  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x40d1c5]
4  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x42dd6e]
5  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x404ded]
6  /usr/lib64/libc.so.6(__libc_start_main+0xf3) [0x1462ba7bb1a3]
7  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x404e1e]
===
0  /usr/lib64/libucs.so.0(+0x1b25f) [0x14b734f3725f]
1  /usr/lib64/libucs.so.0(+0x1b42a) [0x14b734f3742a]
2  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x4482df]
3  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x40d1c5]
4  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x42dd6e]
5  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x404ded]
6  /usr/lib64/libc.so.6(__libc_start_main+0xf3) [0x14b7365451a3]
7  /home/mpiuser/WIEN2k-19.1/lapw1_mpi() [0x404e1e]
===

Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.


mpirun noticed that process rank 1 with PID 0 on node node0 exited on signal 11 
(Segmentation fault).

[1]  + Done  ( cd $PWD; $t $ttt; rm -f 
.lock_$lockfile[$p] ) >> .time1_$loop


Dayfile of the case:


Calculating Testsession in /home/mpiuser/WIEN2k/Testsession
on node0 with PID 1423240
using WIEN2k_19.1 (Release 25/6/2019) in /home/mpiuser/WIEN2k-19.1


start (Mon 20 Apr 2020 01:52:09 PM CEST) with lapw0 (40/99 to go)

cycle 1 (Mon 20 Apr 2020 01:52:09 PM CEST) (40/99 to go)

>   lapw0   -p (13:52:09) starting parallel lapw0 at Mon 20 Apr 2020 01:52:09 
> PM CEST
 .machine0 : 2 processors
1.028u 0.157s 0:02.41 48.5% 0+0k 0+496io 0pf+0w
>   lapw1  -p (13:52:11) starting parallel lapw1 at Mon 20 Apr 2020 
> 01:52:11 PM CEST
->  starting parallel LAPW1 jobs at Mon 20 Apr 2020 01:52:11 PM CEST
running LAPW1 in parallel mode (using .machines)
1 number_of_parallel_jobs
 node0 node1(72) 0.100u 0.089s 0:01.03 17.4% 0+0k 0+8io 0pf+0w
   Summary of lapw1para:
   node0 k=0 user=72 wallclock=5.34
**  LAPW1 crashed!
0.178u 0.148s 0:02.21 14.0% 0+0k 0+136io 0pf+0w
error: command   /home/mpiuser/WIEN2k-19.1/lapw1para lapw1.def   failed

>   stop error


Parallel_Options:

setenv TASKSET "no"
if ( ! $?USE_REMOTE ) setenv USE_REMOTE 1
if ( ! $?MPI_REMOTE ) setenv MPI_REMOTE 0
setenv WIEN_GRANULARITY 1
setenv DELAY 0.1
setenv SLEEPY 1
setenv WIEN_MPIRUN "/usr/lib64/openmpi/bin/mpirun -x LD_LIBRARY_PATH -x PATH 
-np _NP_ -machinefile _HOSTS_ _EXEC_"
setenv CORES_PER_NODE 1


.machines file:


1:node0:1 node1:1

lapw0:node0:1 node1:1

granularity:1


Help would be greatly appreciated.


Best Regards


André Deyerling
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[Wien] LAPW1 segmentation fault WIEN2k.19.1

2019-06-27 Thread Luigi Maduro - TNW
Dear WIEN2k users,

I recently updated from WIEN2k.18.1 to WIEN2k.19.1.
Both versions were compiled with the same intel compilers, intel_xe_2016.
The FFTW3 (fftw-3.3.4) and LIBXC(libxc-4.3.4) packages were also compiled with 
the same intel compilers as the WIEN2k versions and
WIEN2k.19.1 compiles without any error. Each individual node is a shared memory 
machine, and runs CentOS 7, where PBS/torque is used to 
schedule jobs. I have the following compiler options for WIEN2k.19.1
--
M   OpenMP switch:   -qopenmp
  O   Compiler options:-O -FR -mp1 -w -prec_div -pc80 -pad -ip 
-DINTEL_VML -traceback -assume buffered_io -I$(MKLROOT)/include
  L   Linker Flags:$(FOPT) -L$(MKLROOT)/lib/$(MKL_TARGET_ARCH) 
-lpthread -lm -ldl -liomp5
  P   Preprocessor flags   '-DParallel'
  R   R_LIBS (LAPACK+BLAS):-lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core
  F   FFTW options:-DFFTW3 -DFFTW_OMP 
-I/home/lamaduro/2FFTW3/FFTW/include
  FFTW-LIBS:   -L/home/lamaduro/2FFTW3/FFTW/lib -lfftw3 
-lfftw3_omp
  FFTW-PLIBS:  -lfftw3_mpi
  X   LIBX options:-DLIBXC 
-I/home/lamaduro/LIBXC_4_3_4/LIBXC/LIBXC/include
  LIBXC-LIBS:  -L/home/lamaduro/LIBXC_4_3_4/LIBXC/LIBXC/lib/ 
-lxcf03 -lxc

C   Parallel Compiler:  mpiifort
 FP  Parallel Compiler Options:  -O -FR -mp1 -w -prec_div -pc80 -pad -ip 
-DINTEL_VML -traceback -assume buffered_io -I$(MKLROOT)/include
 MP  MPIRUN command: /opt/ud/openmpi-1.8.8/bin/mpirun

Sp  SCALAPACK:   -L$(MKLROOT)/lib/intel64
 -lmkl_scalapack_lp64
 -L$(MKLROOT)/lib/intel64 
-lmkl_blacs_intelmpi_lp64
--

When running the code in serial mode on a unit cell of MoS2 everything runs 
fine on one node and one cpu. However, when I use more than one cpu then lapw1 
gives the following error(in the case below 1 node and 2 cpus were used as a 
test)
--
NLVDW END
[1]Done  mpirun -np 2 -machinefile .machinenlvdw 
/home/lamaduro/WIEN2k_19_2/nlvdw_mpi nlvdw.def >> .time00
LAPW0 END
[1]Done  mpirun -np 2 -machinefile .machine0 
/home/lamaduro/WIEN2k_19_2/lapw0_mpi lapw0.def >> .time00
w2k_dispatch_signal(): received: Segmentation fault
w2k_dispatch_signal(): received: Segmentation fault
application called MPI_Abort(MPI_COMM_WORLD, 0) - process 0
application called MPI_Abort(MPI_COMM_WORLD, 0) - process 1
[1]  + Done  ( cd $PWD; $t $ttt; rm -f 
.lock_$lockfile[$p] ) >> .time1_$loop
grep: lapw2*.error: No such file or directory

--

When I change to the WIEN2k.18.1 version lapw1 runs fine.
Following the advice giving in this link 
http://zeus.theochem.tuwien.ac.at/pipermail/wien/2012-July/017209.html
I changed the blacs library to mkl_blacs_openmpi_lp64 and got the following 
errors when recompiling lapw1


--


/opt/ud/intel_xe_2016/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.so:
 undefined reference to `ompi_mpi_comm_null'
/opt/ud/intel_xe_2016/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.so:
 undefined reference to `MPI_Comm_f2c'
/opt/ud/intel_xe_2016/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.so:
 undefined reference to `ompi_mpi_double'
/opt/ud/intel_xe_2016/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.so:
 undefined reference to `ompi_mpi_dblcplex'
/opt/ud/intel_xe_2016/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.so:
 undefined reference to `ompi_mpi_packed'
/opt/ud/intel_xe_2016/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.so:
 undefined reference to `ompi_mpi_op_max'
/opt/ud/intel_xe_2016/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.so:
 undefined reference to `ompi_mpi_op_maxloc'

[Wien] LAPW1 with ELPA

2019-06-21 Thread Wien2k User
Dear Prof. P. Blaha, Prof. F. Tran and Prof. Gavin Abo

during the compilation of SRC_lapw1 I noticed in compile.msg file that only
lapw_mpi which has been compiled with ELPA
should lapw1 be compiled by ELPA or only lapw1_mpi?
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Re: [Wien] lapw1 and lapw2 not running in parallel

2018-02-21 Thread pboulet
Thank you Laurence for your prompt reply. It works much better this way!

Pascal



> Le 21 févr. 2018 à 16:14, Laurence Marks  a écrit :
> 
> You forgot to include the lines to tell lapw1/lapw2 to run in parallel, e.g. 
> use:
> 
> 1:node043:12
> lapw0: node043:12
> dstart: node043:12
> nlvdw: node043:12
> granularity:1
> extrafine:1
> lapw2_vector_split:4
> 
> N.B., unless this is a very big calculation, the "lapw2_vector_split" will 
> get in the way.
> 
> 
> On Wed, Feb 21, 2018 at 8:52 AM, pboulet  > wrote:
> Dear all,
> 
> I have compiled Wien2K with openmpi 1.6.3, intel fortran 13.0 and FFT 3.3. 
> The scheduler is OAR.
> 
> It seems to work fine for the example files CoS2 except that lapw1 and lapw2 
> « refuse » to run in parallel. Here is the dayfile content for the last cycle:
> cycle 11 (Wed Feb 21 15:26:49 CET 2018) (30/89 to go)
> >   lapw0  -p  (15:26:49) starting parallel lapw0 at Wed Feb 21 15:26:49 CET 
> > 2018
>  .machine0 : 12 processors
> 30.073u 1.343s 0:04.38 717.1%
> 0+0k 0+16io 0pf+0w
> >   lapw1  -p
> (15:26:53) starting parallel lapw1 at Wed Feb 21 15:26:54 CET 2018
> ->  starting parallel LAPW1 jobs at Wed Feb 21 15:26:54 CET 2018
> running LAPW1 in parallel mode (using .machines)
> running lapw1 in single mode
> 61.065u 0.857s 1:01.94 99.9%
> 0+0k 0+16io 0pf+0w
> >   lapw2 -p 
> (15:27:55) running in single mode
> 19.541u 0.525s 0:20.09 99.8%
> 0+0k 0+8io 0pf+0w
> >   lcore  (15:28:16) 0.012u 0.003s 0:00.02 50.0%
> 0+0k 0+8io 0pf+0w
> >   mixer  (15:28:16) 0.048u 0.007s 0:00.06 66.6%
> 0+0k 0+8io 0pf+0w
> :ENERGY convergence:  1 0.0001 .6345
> :CHARGE convergence:  1 0.01 -.008733
> ec cc and fc_conv 1 1 1
> 
> >   stop
> 
> Obviously lapw1 and lapw2 are running in single mode.
> 
> In the manual it is said that during the lapw1para run the .processes file is 
> created. In my case, it is not.
> 
> For information, here is my .machines file content:
> lapw0: node043:12
> dstart: node043:12
> nlvdw: node043:12
> granularity:1
> extrafine:1
> lapw2_vector_split:4
> 
> Could someone give me a hint on what is going on?
> 
> Thank you
> Best regards
> 
> 
> Pascal Boulet
> —
> Professor in computational chemistry - DEPARTMENT OF CHEMISTRY
> Director of the Madirel laboratory
> Aix-Marseille University - Avenue Escadrille Normandie Niemen - F-13013 
> Marseille - FRANCE
> Tél: +33(0)4 13 55 18 10 et +33(0)4 13 55 18 19 - Fax : +33(0)4 13 55 18 50
> Email : pascal.bou...@univ-amu.fr 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> 
> -- 
> Professor Laurence Marks
> "Research is to see what everybody else has seen, and to think what nobody 
> else has thought", Albert Szent-Gyorgi
> www.numis.northwestern.edu  ; Corrosion 
> in 4D: MURI4D.numis.northwestern.edu 
> Partner of the CFW 100% program for gender equity, www.cfw.org/100-percent 
> 
> Co-Editor, Acta Cryst A
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Re: [Wien] lapw1 and lapw2 not running in parallel

2018-02-21 Thread Laurence Marks
You forgot to include the lines to tell lapw1/lapw2 to run in parallel,
e.g. use:

1:node043:12
lapw0: node043:12
dstart: node043:12
nlvdw: node043:12
granularity:1
extrafine:1
lapw2_vector_split:4

N.B., unless this is a very big calculation, the "lapw2_vector_split" will
get in the way.


On Wed, Feb 21, 2018 at 8:52 AM, pboulet  wrote:

> Dear all,
>
> I have compiled Wien2K with openmpi 1.6.3, intel fortran 13.0 and FFT 3.3.
> The scheduler is OAR.
>
> It seems to work fine for the example files CoS2 except that lapw1 and
> lapw2 « refuse » to run in parallel. Here is the dayfile content for the
> last cycle:
> cycle 11 (Wed Feb 21 15:26:49 CET 2018) (30/89 to go)
> >   lapw0  -p (15:26:49) starting parallel lapw0 at Wed Feb 21 15:26:49
> CET 2018
>  .machine0 : 12 processors
> 30.073u 1.343s 0:04.38 717.1% 0+0k 0+16io 0pf+0w
> >   lapw1  -p (15:26:53) starting parallel lapw1 at Wed Feb 21
> 15:26:54 CET 2018
> ->  starting parallel LAPW1 jobs at Wed Feb 21 15:26:54 CET 2018
> running LAPW1 in parallel mode (using .machines)
> running lapw1 in single mode
> 61.065u 0.857s 1:01.94 99.9% 0+0k 0+16io 0pf+0w
> >   lapw2 -p (15:27:55) running in single mode
> 19.541u 0.525s 0:20.09 99.8% 0+0k 0+8io 0pf+0w
> >   lcore (15:28:16) 0.012u 0.003s 0:00.02 50.0% 0+0k 0+8io 0pf+0w
> >   mixer (15:28:16) 0.048u 0.007s 0:00.06 66.6% 0+0k 0+8io 0pf+0w
> :ENERGY convergence:  1 0.0001 .6345
> :CHARGE convergence:  1 0.01 -.008733
> ec cc and fc_conv 1 1 1
>
> >   stop
>
> Obviously lapw1 and lapw2 are running in single mode.
>
> In the manual it is said that during the lapw1para run the .processes file
> is created. In my case, it is not.
>
> For information, here is my .machines file content:
> lapw0: node043:12
> dstart: node043:12
> nlvdw: node043:12
> granularity:1
> extrafine:1
> lapw2_vector_split:4
>
> Could someone give me a hint on what is going on?
>
> Thank you
> Best regards
>
>
> Pascal Boulet
> —
> *Professor in computational chemistry - DEPARTMENT OF CHEMISTRY*
> Director of the Madirel laboratory
> Aix-Marseille University - Avenue Escadrille Normandie Niemen - F-13013
> Marseille - FRANCE
> Tél: +33(0)4 13 55 18 10 et +33(0)4 13 55 18 19 - Fax : +33(0)4 13 55 18 50
> Email : pascal.bou...@univ-amu.fr
>
>
>
>
>
>
>
>
>


-- 
Professor Laurence Marks
"Research is to see what everybody else has seen, and to think what nobody
else has thought", Albert Szent-Gyorgi
www.numis.northwestern.edu ; Corrosion in 4D: MURI4D.numis.northwestern.edu
Partner of the CFW 100% program for gender equity, www.cfw.org/100-percent
Co-Editor, Acta Cryst A
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[Wien] lapw1 and lapw2 not running in parallel

2018-02-21 Thread pboulet
Dear all,

I have compiled Wien2K with openmpi 1.6.3, intel fortran 13.0 and FFT 3.3. The 
scheduler is OAR.

It seems to work fine for the example files CoS2 except that lapw1 and lapw2 « 
refuse » to run in parallel. Here is the dayfile content for the last cycle:
cycle 11(Wed Feb 21 15:26:49 CET 2018)  (30/89 to go)
>   lapw0  -p   (15:26:49) starting parallel lapw0 at Wed Feb 21 15:26:49 CET 
> 2018
 .machine0 : 12 processors
30.073u 1.343s 0:04.38 717.1%   0+0k 0+16io 0pf+0w
>   lapw1  -p   (15:26:53) starting parallel lapw1 at Wed Feb 21 
> 15:26:54 CET 2018
->  starting parallel LAPW1 jobs at Wed Feb 21 15:26:54 CET 2018
running LAPW1 in parallel mode (using .machines)
running lapw1 in single mode
61.065u 0.857s 1:01.94 99.9%0+0k 0+16io 0pf+0w
>   lapw2 -p(15:27:55) running in single mode
19.541u 0.525s 0:20.09 99.8%0+0k 0+8io 0pf+0w
>   lcore   (15:28:16) 0.012u 0.003s 0:00.02 50.0%  0+0k 0+8io 0pf+0w
>   mixer   (15:28:16) 0.048u 0.007s 0:00.06 66.6%  0+0k 0+8io 0pf+0w
:ENERGY convergence:  1 0.0001 .6345
:CHARGE convergence:  1 0.01 -.008733
ec cc and fc_conv 1 1 1

>   stop

Obviously lapw1 and lapw2 are running in single mode.

In the manual it is said that during the lapw1para run the .processes file is 
created. In my case, it is not.

For information, here is my .machines file content:
lapw0: node043:12
dstart: node043:12
nlvdw: node043:12
granularity:1
extrafine:1
lapw2_vector_split:4

Could someone give me a hint on what is going on?

Thank you
Best regards


Pascal Boulet
—
Professor in computational chemistry - DEPARTMENT OF CHEMISTRY
Director of the Madirel laboratory
Aix-Marseille University - Avenue Escadrille Normandie Niemen - F-13013 
Marseille - FRANCE
Tél: +33(0)4 13 55 18 10 et +33(0)4 13 55 18 19 - Fax : +33(0)4 13 55 18 50
Email : pascal.bou...@univ-amu.fr 








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Re: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5

2017-09-23 Thread Peter Blaha

I guess it is not mentioned in the UG yet (I'll add this ...):

Unfortunately, HDLOs can only be used in a regular scf cycle without SO 
A DOS (with case.qtl from lapw2) should be ok, but x qtl or optic cannot 
be used with HDLOs).


Am 23.09.2017 um 18:39 schrieb Dürrschnabel, Michael:

Dear Mr. Tran, dear Wien2k users,


thanks for the hint. I tested it and it worked fine for the case that 
you neglect spin-orbit coupling. However, in this particular material 
system spin-orbit coupling plays an important role and should be 
switched on in your calculation. If you do so and run e.g.



     "runsp_lapw -p -so -orb -i 150 -ec 0.0001 -cc 0.01 -NI"


the scf cycle runs up to LAPWSO. Afterwards, I get in the console:


**

*
    FERMI - Error
    cp: cannot stat '.in.tmp': No such file or directory
    >  stop error

The file "uplapw2.error"- the only error file with non-zero file size- 
contains the following output:


    'FERMI' -  # of eigenvalues eq 0, check case.scf1
    **  testerror: Error in Parallel LAPW2

There is no further error output.

*

*Best regards,*

*
*

*Michael Duerrschnabel
*

*
*

*Additional info:*

*
*

*case.inso (created by initso)*

*
*

**

*
WFFIL
4  0  0 llmax,ipr,kpot
-10  1.5    Emin, Emax
     0 0 1   h,k,l (direction of magnetization)
  3   number of atoms with RLO
1 -1.58 0.0010 CONT atom-number, E-param for RLO
2 -4.56 0.0001 STOP atom-number, E-param for RLO
3 -4.56 0.0001 STOP atom-number, E-param for RLO
0 0  number of atoms without SO, atomnumbers

*


*Von:* Wien <wien-boun...@zeus.theochem.tuwien.ac.at> im Auftrag von 
t...@theochem.tuwien.ac.at <t...@theochem.tuwien.ac.at>

*Gesendet:* Freitag, 22. September 2017 21:34:13
*An:* A Mailing list for WIEN2k users
*Betreff:* Re: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5
Hi,
the number of lines for the 1st atom is 7 since you added an HDLO:
"0.30    6  0" --> "0.30    7  0"

FT

On Friday 2017-09-22 18:20, MD wrote:


Date: Fri, 22 Sep 2017 18:20:37
From: MD <duerrschna...@geo.tu-darmstadt.de>
Reply-To: A Mailing list for WIEN2k users <wien@zeus.theochem.tuwien.ac.at>
To: wien@zeus.theochem.tuwien.ac.at
Subject: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5

Dear Wien2k users,

I tried to run a scf cycle for SmCo5 using HDLO's for the Sm f-states 
using Wien2k v 17.1. LDA as exchange-correlation potential was selected. 
The system is spin-polarized and you need spin-orbit and the Hubbard U 
corrections (here: U=0.3 Ry, J=0, SIC). The Sm f-states lie close to the 
Fermi level. The RMT's of Sm are quite large in this system and, thus, 
it might be of advance to use HDLO's for the Sm f states (my case.in1 
see below). However, LAPW1 stops immediately whether spin-orbit or +U 
was selected or not throwing the following error (the scf cycle was 
started via wien2web):


  'INILPW' - Invalid k-point file on unit   0 



  'LAPW1' - INILPW aborted unsuccessfully.

Did I make a mistake or is it a bug? The case.in1 file should be 
correct, according to slide 16 of 
http://susi.theochem.tuwien.ac.at/events/ws2017/notes/PB-getting_started.pdf. 



Please let me know if you need more information than added below.

Best regards,

Michael Duerrschnabel



Additional info:


case.in1 file:

WFFIL  EF= 0.5   (WFFIL, WFPRI, ENFIL, SUPWF)
  8 10   6   ELPA pxq hm (R-MT*K-MAX,MAX L IN 
WF,V-NMT,lib,gridshape,hm/lm)
   0.30    6  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

  0    0.30 0. CONT 1
  0   -3.20 0.0001 STOP 1
  1    0.30 0. CONT 1
  1   -1.58 0.0010 CONT 1
  3    0.30 0.0010 CONT 1 // APW+lo for Sm f states
  3    0.30 0.0010 CONT 2 // This should account for the HDLO of the 
Sm f states

  2    0.30 0.0010 CONT 1
   0.30    4  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

  1    0.30 0. CONT 1
  1   -4.56 0.0001 STOP 1
  2    0.30 0.0010 CONT 1
  0    0.30 0. CONT 1
   0.30    4  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

  1    0.30 0. CONT 1
  1   -4.56 0.0001 STOP 1
  2    0.30 0.0010 CONT 1
  0    0.30 0. CONT 1
K-VECTORS FROM UNIT:4   -9.0   1.5   187   emin / de (emax=Ef+de) / 
nband


---

case.struct:

SmCo5 

H   LATTICE,NONEQUIV.ATOMS:  3 191_P6/mmm 

MODE OF CALC=RELA unit=ang 

   9.459973  9.459973  7.502405 90.00 90.00120.00 


ATOM  -1: X=0. Y=0. Z=0.
   MULT= 1  ISPLIT= 4
Sm NPT=  781  R0=0.1000 RMT=    2.5000   Z: 62.000 


LOCAL ROT MATRIX:    1.000 0.000 0.000
  0.000 1.000 0.000
  

Re: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5

2017-09-23 Thread Dürrschnabel , Michael
Dear Mr. Tran, dear Wien2k users,


thanks for the hint. I tested it and it worked fine for the case that you 
neglect spin-orbit coupling. However, in this particular material system 
spin-orbit coupling plays an important role and should be switched on in your 
calculation. If you do so and run e.g.


"runsp_lapw -p -so -orb -i 150 -ec 0.0001 -cc 0.01 -NI"


the scf cycle runs up to LAPWSO. Afterwards, I get in the console:


   FERMI - Error
   cp: cannot stat '.in.tmp': No such file or directory
   >  stop error

The file "uplapw2.error"- the only error file with non-zero file size- contains 
the following output:

   'FERMI' -  # of eigenvalues eq 0, check case.scf1
   **  testerror: Error in Parallel LAPW2

There is no further error output.


Best regards,


Michael Duerrschnabel


Additional info:


case.inso (created by initso)


WFFIL
4  0  0 llmax,ipr,kpot
-10  1.5Emin, Emax
0 0 1   h,k,l (direction of magnetization)
 3   number of atoms with RLO
1 -1.58 0.0010 CONT atom-number, E-param for RLO
2 -4.56 0.0001 STOP atom-number, E-param for RLO
3 -4.56 0.0001 STOP atom-number, E-param for RLO
0 0  number of atoms without SO, atomnumbers



Von: Wien <wien-boun...@zeus.theochem.tuwien.ac.at> im Auftrag von 
t...@theochem.tuwien.ac.at <t...@theochem.tuwien.ac.at>
Gesendet: Freitag, 22. September 2017 21:34:13
An: A Mailing list for WIEN2k users
Betreff: Re: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5

Hi,
the number of lines for the 1st atom is 7 since you added an HDLO:
"0.306  0" --> "0.307  0"

FT

On Friday 2017-09-22 18:20, MD wrote:

>Date: Fri, 22 Sep 2017 18:20:37
>From: MD <duerrschna...@geo.tu-darmstadt.de>
>Reply-To: A Mailing list for WIEN2k users <wien@zeus.theochem.tuwien.ac.at>
>To: wien@zeus.theochem.tuwien.ac.at
>Subject: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5
>
> Dear Wien2k users,
>
> I tried to run a scf cycle for SmCo5 using HDLO's for the Sm f-states
> using Wien2k v 17.1. LDA as exchange-correlation potential was selected.
> The system is spin-polarized and you need spin-orbit and the Hubbard U
> corrections (here: U=0.3 Ry, J=0, SIC). The Sm f-states lie close to the
> Fermi level. The RMT's of Sm are quite large in this system and, thus,
> it might be of advance to use HDLO's for the Sm f states (my case.in1
> see below). However, LAPW1 stops immediately whether spin-orbit or +U
> was selected or not throwing the following error (the scf cycle was
> started via wien2web):
>
>  'INILPW' - Invalid k-point file on unit   0
>
>
>  'LAPW1' - INILPW aborted unsuccessfully.
>
> Did I make a mistake or is it a bug? The case.in1 file should be
> correct, according to slide 16 of
> http://susi.theochem.tuwien.ac.at/events/ws2017/notes/PB-getting_started.pdf.
> Please let me know if you need more information than added below.
>
> Best regards,
>
> Michael Duerrschnabel
>
>
>
> Additional info:
>
>
> case.in1 file:
>
> WFFIL  EF= 0.5   (WFFIL, WFPRI, ENFIL, SUPWF)
>  8 10   6   ELPA pxq hm (R-MT*K-MAX,MAX L IN
> WF,V-NMT,lib,gridshape,hm/lm)
>   0.306  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global
> APW/LAPW)
>  00.30 0. CONT 1
>  0   -3.20 0.0001 STOP 1
>  10.30 0. CONT 1
>  1   -1.58 0.0010 CONT 1
>  30.30 0.0010 CONT 1 // APW+lo for Sm f states
>  30.30 0.0010 CONT 2 // This should account for the HDLO of the
> Sm f states
>  20.30 0.0010 CONT 1
>   0.304  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global
> APW/LAPW)
>  10.30 0. CONT 1
>  1   -4.56 0.0001 STOP 1
>  20.30 0.0010 CONT 1
>  00.30 0. CONT 1
>   0.304  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global
> APW/LAPW)
>  10.30 0. CONT 1
>  1   -4.56 0.0001 STOP 1
>  20.30 0.0010 CONT 1
>  00.30 0. CONT 1
> K-VECTORS FROM UNIT:4   -9.0   1.5   187   emin / de (emax=Ef+de) /
> nband
>
> ---
>
> case.struct:
>
> SmCo5
>
> H   LATTICE,NONEQUIV.ATOMS:  3 191_P6/mmm
>
> MODE OF CALC=RELA unit=ang
>
>   9.459973  9.459973  7.502405 90.00 90.00120.00
>
> ATOM  -1: X=0. Y=0. Z=0.
>   MULT= 1  ISPLIT= 4
> Sm NPT=  781  R0=0.1000 RMT=2.5000   Z: 62.000
>
> LOCAL ROT MATRIX:1.000 0.000 0.000
>  0.000 1.000 0.000
>  0.000 0.000

Re: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5

2017-09-22 Thread tran

Hi,
the number of lines for the 1st atom is 7 since you added an HDLO:
"0.306  0" --> "0.307  0"

FT

On Friday 2017-09-22 18:20, MD wrote:


Date: Fri, 22 Sep 2017 18:20:37
From: MD <duerrschna...@geo.tu-darmstadt.de>
Reply-To: A Mailing list for WIEN2k users <wien@zeus.theochem.tuwien.ac.at>
To: wien@zeus.theochem.tuwien.ac.at
Subject: [Wien] LAPW1 error using HDLO's for Sm f states in SmCo5

Dear Wien2k users,

I tried to run a scf cycle for SmCo5 using HDLO's for the Sm f-states 
using Wien2k v 17.1. LDA as exchange-correlation potential was selected. 
The system is spin-polarized and you need spin-orbit and the Hubbard U 
corrections (here: U=0.3 Ry, J=0, SIC). The Sm f-states lie close to the 
Fermi level. The RMT's of Sm are quite large in this system and, thus, 
it might be of advance to use HDLO's for the Sm f states (my case.in1 
see below). However, LAPW1 stops immediately whether spin-orbit or +U 
was selected or not throwing the following error (the scf cycle was 
started via wien2web):


 'INILPW' - Invalid k-point file on unit   0 



 'LAPW1' - INILPW aborted unsuccessfully.

Did I make a mistake or is it a bug? The case.in1 file should be 
correct, according to slide 16 of 
http://susi.theochem.tuwien.ac.at/events/ws2017/notes/PB-getting_started.pdf. 
Please let me know if you need more information than added below.


Best regards,

Michael Duerrschnabel



Additional info:


case.in1 file:

WFFIL  EF= 0.5   (WFFIL, WFPRI, ENFIL, SUPWF)
 8 10   6   ELPA pxq hm (R-MT*K-MAX,MAX L IN 
WF,V-NMT,lib,gridshape,hm/lm)
  0.306  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

 00.30 0. CONT 1
 0   -3.20 0.0001 STOP 1
 10.30 0. CONT 1
 1   -1.58 0.0010 CONT 1
 30.30 0.0010 CONT 1 // APW+lo for Sm f states
 30.30 0.0010 CONT 2 // This should account for the HDLO of the 
Sm f states

 20.30 0.0010 CONT 1
  0.304  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

 10.30 0. CONT 1
 1   -4.56 0.0001 STOP 1
 20.30 0.0010 CONT 1
 00.30 0. CONT 1
  0.304  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

 10.30 0. CONT 1
 1   -4.56 0.0001 STOP 1
 20.30 0.0010 CONT 1
 00.30 0. CONT 1
K-VECTORS FROM UNIT:4   -9.0   1.5   187   emin / de (emax=Ef+de) / 
nband


---

case.struct:

SmCo5 

H   LATTICE,NONEQUIV.ATOMS:  3 191_P6/mmm 

MODE OF CALC=RELA unit=ang 

  9.459973  9.459973  7.502405 90.00 90.00120.00 


ATOM  -1: X=0. Y=0. Z=0.
  MULT= 1  ISPLIT= 4
Sm NPT=  781  R0=0.1000 RMT=2.5000   Z: 62.000 


LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -2: X=0. Y=0.6667 Z=0.
  MULT= 2  ISPLIT= 4
  -2: X=0.6667 Y=0. Z=0.
Co NPT=  781  R0=0.5000 RMT=2.1900   Z: 27.000 


LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -3: X=0.5000 Y=0. Z=0.5000
  MULT= 3  ISPLIT= 8
  -3: X=0.5000 Y=0.5000 Z=0.5000
  -3: X=0. Y=0.5000 Z=0.5000
Co NPT=  781  R0=0.5000 RMT=2.1900   Z: 27.000 


LOCAL ROT MATRIX:0.8660254 0.500 0.000
-0.500 0.8660254 0.000
 0.000 0.000 1.000
  24  NUMBER OF SYMMETRY OPERATIONS
-1 0 0 0.
-1 1 0 0.
 0 0-1 0.
   1
-1 0 0 0.
-1 1 0 0.
 0 0 1 0.
   2
-1 1 0 0.
-1 0 0 0.
 0 0-1 0.
   3
-1 1 0 0.
-1 0 0 0.
 0 0 1 0.
   4
-1 0 0 0.
 0-1 0 0.
 0 0-1 0.
   5
-1 0 0 0.
 0-1 0 0.
 0 0 1 0.
   6
-1 1 0 0.
 0 1 0 0.
 0 0-1 0.
   7
-1 1 0 0.
 0 1 0 0.
 0 0 1 0.
   8
 0-1 0 0.
-1 0 0 0.
 0 0-1 0.
   9
 0-1 0 0.
-1 0 0 0.
 0 0 1 0.
  10
 0 1 0 0.
-1 1 0 0.
 0 0-1 0.
  11
 0 1 0 0.
-1 1 0 0.
 0 0 1 0.
  12
 0-1 0 0.
 1-1 0 0.
 0 0-1 0.
  13
 0-1 0 0.
 1-1 0 0.
 0 0 1 0.
  14
 0 1 0 0.
 1 0 0 0.
 0 0-1 0.
  15
 0 1 0 0.
 1 0 0 0.
 0 0 1 0.
  16
 1-1 0 0.
 0-1 0 0.
 0 0-1 0.
  17
 1-1 0 0.
 0-1 0 0.
 0 0 1 0.
  18
 1 0 0 0.
 0 1 0 0.
 0 0-1 0.
  19
 1 0 0 

[Wien] LAPW1 error using HDLO's for Sm f states in SmCo5

2017-09-22 Thread MD

Dear Wien2k users,

I tried to run a scf cycle for SmCo5 using HDLO's for the Sm f-states 
using Wien2k v 17.1. LDA as exchange-correlation potential was selected. 
The system is spin-polarized and you need spin-orbit and the Hubbard U 
corrections (here: U=0.3 Ry, J=0, SIC). The Sm f-states lie close to the 
Fermi level. The RMT's of Sm are quite large in this system and, thus, 
it might be of advance to use HDLO's for the Sm f states (my case.in1 
see below). However, LAPW1 stops immediately whether spin-orbit or +U 
was selected or not throwing the following error (the scf cycle was 
started via wien2web):


 'INILPW' - Invalid k-point file on unit   0 



 'LAPW1' - INILPW aborted unsuccessfully.

Did I make a mistake or is it a bug? The case.in1 file should be 
correct, according to slide 16 of 
http://susi.theochem.tuwien.ac.at/events/ws2017/notes/PB-getting_started.pdf. 
Please let me know if you need more information than added below.


Best regards,

Michael Duerrschnabel



Additional info:


case.in1 file:

WFFIL  EF= 0.5   (WFFIL, WFPRI, ENFIL, SUPWF)
 8 10   6   ELPA pxq hm (R-MT*K-MAX,MAX L IN 
WF,V-NMT,lib,gridshape,hm/lm)
  0.306  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

 00.30 0. CONT 1
 0   -3.20 0.0001 STOP 1
 10.30 0. CONT 1
 1   -1.58 0.0010 CONT 1
 30.30 0.0010 CONT 1 // APW+lo for Sm f states
 30.30 0.0010 CONT 2 // This should account for the HDLO of the 
Sm f states

 20.30 0.0010 CONT 1
  0.304  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

 10.30 0. CONT 1
 1   -4.56 0.0001 STOP 1
 20.30 0.0010 CONT 1
 00.30 0. CONT 1
  0.304  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global 
APW/LAPW)

 10.30 0. CONT 1
 1   -4.56 0.0001 STOP 1
 20.30 0.0010 CONT 1
 00.30 0. CONT 1
K-VECTORS FROM UNIT:4   -9.0   1.5   187   emin / de (emax=Ef+de) / 
nband


---

case.struct:

SmCo5 

H   LATTICE,NONEQUIV.ATOMS:  3 191_P6/mmm 

MODE OF CALC=RELA unit=ang 

  9.459973  9.459973  7.502405 90.00 90.00120.00 


ATOM  -1: X=0. Y=0. Z=0.
  MULT= 1  ISPLIT= 4
Sm NPT=  781  R0=0.1000 RMT=2.5000   Z: 62.000 


LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -2: X=0. Y=0.6667 Z=0.
  MULT= 2  ISPLIT= 4
  -2: X=0.6667 Y=0. Z=0.
Co NPT=  781  R0=0.5000 RMT=2.1900   Z: 27.000 


LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -3: X=0.5000 Y=0. Z=0.5000
  MULT= 3  ISPLIT= 8
  -3: X=0.5000 Y=0.5000 Z=0.5000
  -3: X=0. Y=0.5000 Z=0.5000
Co NPT=  781  R0=0.5000 RMT=2.1900   Z: 27.000 


LOCAL ROT MATRIX:0.8660254 0.500 0.000
-0.500 0.8660254 0.000
 0.000 0.000 1.000
  24  NUMBER OF SYMMETRY OPERATIONS
-1 0 0 0.
-1 1 0 0.
 0 0-1 0.
   1
-1 0 0 0.
-1 1 0 0.
 0 0 1 0.
   2
-1 1 0 0.
-1 0 0 0.
 0 0-1 0.
   3
-1 1 0 0.
-1 0 0 0.
 0 0 1 0.
   4
-1 0 0 0.
 0-1 0 0.
 0 0-1 0.
   5
-1 0 0 0.
 0-1 0 0.
 0 0 1 0.
   6
-1 1 0 0.
 0 1 0 0.
 0 0-1 0.
   7
-1 1 0 0.
 0 1 0 0.
 0 0 1 0.
   8
 0-1 0 0.
-1 0 0 0.
 0 0-1 0.
   9
 0-1 0 0.
-1 0 0 0.
 0 0 1 0.
  10
 0 1 0 0.
-1 1 0 0.
 0 0-1 0.
  11
 0 1 0 0.
-1 1 0 0.
 0 0 1 0.
  12
 0-1 0 0.
 1-1 0 0.
 0 0-1 0.
  13
 0-1 0 0.
 1-1 0 0.
 0 0 1 0.
  14
 0 1 0 0.
 1 0 0 0.
 0 0-1 0.
  15
 0 1 0 0.
 1 0 0 0.
 0 0 1 0.
  16
 1-1 0 0.
 0-1 0 0.
 0 0-1 0.
  17
 1-1 0 0.
 0-1 0 0.
 0 0 1 0.
  18
 1 0 0 0.
 0 1 0 0.
 0 0-1 0.
  19
 1 0 0 0.
 0 1 0 0.
 0 0 1 0.
  20
 1-1 0 0.
 1 0 0 0.
 0 0-1 0.
  21
 1-1 0 0.
 1 0 0 0.
 0 0 1 0.
  22
 1 0 0 0.
 1-1 0 0.
 0 0-1 0.
  23
 1 0 0 0.
 1-1 0 0.
 0 0 1 0.
  24



--
Dr. Michael Dürrschnabel
Technische Universität Darmstadt
Department of Material- and Geosciences
Raum/room: 52
Alarich-Weiß-Straße 2

Re: [Wien] lapw1.error

2015-02-06 Thread Mohammed Abujafar
Dear Peter, Gavin and Lyudmila,I have solved the problem by increasing the 
value of c.Thank you very much for your cooperation.With best regardsMohammed
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Re: [Wien] lapw1.error

2015-02-05 Thread Lyudmila Dobysheva

Am 04.02.2015 um 19:26 schrieb Mohammed Abujafar:

Correction: attached file contains 2.5 layers of STO instead of 2 layers
and 1.5 layers of LAO
On Tuesday, February 3, 2015 5:27 PM, Mohammed Abujafar
I have checked out the lapw1.error , I found the following:
  'SELECT' - no energy limits found for atom   7  L= 0
  'SELECT' - E-bottom   -8.58284   E-top -200.0


Dear Mohammed,

I have looked through struct file via xcrysden and see that distances 
between atoms perpendicular to the film surface are too small (1.9 A).
I have some experience with La-Sr-Cu-O system and there was never a 
distance less then 3 A between metals, and 1.8 A between metal-oxygen 
(you have 0.98 A).
Such error ('SELECT' - no energy limits found for atom) is also a sign 
of too close atoms.

Do consider attentively the structure, yours looks unrealistic, imho.

Best wishes
Lyudmila Dobysheva
--
Phys.-Techn. Institute of Ural Br. of Russian Ac. of Sci.
426001 Izhevsk, ul.Kirova 132
RUSSIA
--
Tel.:7(3412) 432045(office), 722529(Fax)
E-mail: l...@ftiudm.ru, lyuk...@mail.ru (office)
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Re: [Wien] lapw1.error

2015-02-04 Thread Mohammed Abujafar
Dear Prof. Blaha,I copied my struct file to a new directory and I got the same 
error.Attached is my struct file with two layers for STO and 1.5 layer for LAO. 
I have saved the file and I have

set automatically RMT and continue editing
The initialization was Ok.
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Re: [Wien] lapw1.error

2015-02-04 Thread Mohammed Abujafar

 Dear Prof. Blaha,I copied my struct file to a new directory and I got the same 
error.Attached is my struct file with two layers of STO and 1.5 layer of LAO. I 
have saved the struct file and I have also

set automatically RMT and continue editing
The initialization was Ok.Thank you very much for your help in advanceWith best 
regardsMohammed
  

 On Tuesday, February 3, 2015 5:27 PM, Mohammed Abujafar 
mabuja...@yahoo.com wrote:
   

 Dear WIEN2k users,Hi,I am trying to do interface calculations.I have built my 
interface without any problem.The initialization was done successfuly.When I 
start running the scf I got the following: LAPW0 END
SELECT - Error

   stop error
--
 start  (Tue Feb  3 17:10:02 CET 2015) with lapw0 (40/99 to go)

cycle 1 (Tue Feb  3 17:10:02 CET 2015)  (40/99 to go)

   lapw0   (17:10:02) 18.526u 0.239s 0:18.99 98.7% 0+0k 15416+12552io 
 3pf+0w
   lapw1 -c(17:10:21) 0.321u 0.018s 0:00.40 82.5%  0+0k 
 3224+2504io 1pf+0w

   stop error
---I
 have checked out the lapw1.error , I found the following:

 'SELECT' - no energy limits found for atom   7  L= 0  
 'SELECT' - E-bottom   -8.58284   E-top -200.0 
===How
 can I solve this error? Your help is so appreciated.With best regardsMohammed





   

STO-LAO-interface-1.struct
Description: Binary data
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Re: [Wien] lapw1.error

2015-02-04 Thread Mohammed Abujafar
 


Correction: attached file contains 2.5 layers of STO instead of 2 layers and 
1.5 layers of LAO
 
 Dear Prof. Blaha,I copied my struct file to a new directory and I got the same 
error.Attached is my struct file with two layers of STO and 1.5 layer of LAO. I 
have saved the struct file and I have also

set automatically RMT and continue editing
The initialization was Ok.Thank you very much for your help in advanceWith best 
regardsMohammed
  

 On Tuesday, February 3, 2015 5:27 PM, Mohammed Abujafar 
mabuja...@yahoo.com wrote:
   

 Dear WIEN2k users,Hi,I am trying to do interface calculations.I have built my 
interface without any problem.The initialization was done successfuly.When I 
start running the scf I got the following: LAPW0 END
SELECT - Error

   stop error
--
 start  (Tue Feb  3 17:10:02 CET 2015) with lapw0 (40/99 to go)

cycle 1 (Tue Feb  3 17:10:02 CET 2015)  (40/99 to go)

   lapw0   (17:10:02) 18.526u 0.239s 0:18.99 98.7% 0+0k 15416+12552io 
 3pf+0w
   lapw1 -c(17:10:21) 0.321u 0.018s 0:00.40 82.5%  0+0k 
 3224+2504io 1pf+0w

   stop error
---I
 have checked out the lapw1.error , I found the following:

 'SELECT' - no energy limits found for atom   7  L= 0  
 'SELECT' - E-bottom   -8.58284   E-top -200.0 
===How
 can I solve this error? Your help is so appreciated.With best regardsMohammed







   

STO-LAO-interface-1.struct
Description: Binary data
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Re: [Wien] lapw1.error

2015-02-04 Thread Peter Blaha
I'm abroad and cannot display your struct file correctly, nor can I test 
it at the moment.


However, I saw that all RMT=2.0 which is for sure not correct.

Am 04.02.2015 um 19:26 schrieb Mohammed Abujafar:




Correction: attached file contains 2.5 layers of STO instead of 2 layers
and 1.5 layers of LAO

Dear Prof. Blaha,
I copied my struct file to a new directory and I got the same
error.Attached is my struct file with two layers of STO and 1.5 layer of
LAO. I have saved the struct file and I have also


  set automatically RMT and continue editing
  http://astroem.phys.uniroma1.it:7890/util/structrmt.pl?SID=521174

The initialization was Ok.Thank you very much for your help in advance
With best regards
Mohammed


On Tuesday, February 3, 2015 5:27 PM, Mohammed Abujafar
mabuja...@yahoo.com wrote:


Dear WIEN2k users,
Hi,
I am trying to do interface calculations.I have built my interface
without any problem.The initialization was done successfuly.When I start
running the scf I got the following:

  LAPW0 END
SELECT - Error


  stop error

--

  start (Tue Feb  3 17:10:02 CET 2015) with lapw0 (40/99 to go)

 cycle 1(Tue Feb  3 17:10:02 CET 2015)  (40/99 to go)


  lapw0 (17:10:02) 18.526u 0.239s 0:18.99 98.7% 0+0k 15416+12552io 
3pf+0w
  lapw1 -c  (17:10:21) 0.321u 0.018s 0:00.40 82.5%  0+0k 3224+2504io 1pf+0w



  stop error


---
I have checked out the lapw1.error , I found the following:

  'SELECT' - no energy limits found for atom   7  L= 0
  'SELECT' - E-bottom   -8.58284   E-top -200.0
===
How can I solve this error? Your help is so appreciated.
With best regards
Mohammed









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Inst.Materials Chemistry
TU Vienna
Getreidemarkt 9
A-1060 Vienna
Austria
+43-1-5880115671
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[Wien] LAPW1 error

2015-02-03 Thread lokanath patra
Dear Prof Blaha,
   I am running an anti-ferromagnetic calculation for Chromium.When I run
the SCF calculation via w2web ,its running fine.But when i try to run it
through script(.sh) file,it is showing LAPW1 error.As I am a new user,I
can't solve this problem.Please help me in solving this problem.The script
file is given below.

#!/bin/bash
#SBATCH --job-name=Cu
#SBATCH --ntasks=6
#SBATCH --account=nn2875k
#SBATCH --time=60:30:0
#SBATCH --mem-per-cpu=4GB
#SBATCH --constraint=ib

ulimit -s unlimited
ulimit -l unlimited
ulimit -m unlimited

source /etc/profile
source /cluster/bin/jobsetup
module load lapack intel intelmpi.intel openmpi.intel fftw

# Setting some variables.
PATH=$PATH:$HOME/lib/w215:.
WORK=$SUBMITDIR

# making scratch directory
mkdir -p $SCRATCH/Cr
RUN=$SCRATCH/Cr

# Goto run dir
cd $RUN

#Create .machines file
echo granularity:1  .machines
echo extrafine:1  .machines
sed 's/com/1:com/g' $TMPDIR/machines  .machines

# Copy inpufiles to common scratch
cp $WORK/*.in* $RUN
cp $WORK/*.struct $RUN
cp $WORK/*.klist* $RUN
cp $WORK/*.kgen* $RUN
cp $WORK/Cr.clmsum $RUN/Cr.clmsum
cp $WORK/*.rsp* $RUN

###

-- 
Lokanath Patra
Ph.D Scholar
Dept. of Physics
School of Applied and Basic Sciences
Central University of Tamil Nadu
Thiruvarur
Tamil Nadu - 610101
Ph no - +91-8675834507
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[Wien] lapw1.error

2015-02-03 Thread Mohammed Abujafar
Dear WIEN2k users,Hi,I am trying to do interface calculations.I have built my 
interface without any problem.The initialization was done successfuly.When I 
start running the scf I got the following: LAPW0 END
SELECT - Error

   stop error
--
 start  (Tue Feb  3 17:10:02 CET 2015) with lapw0 (40/99 to go)

cycle 1 (Tue Feb  3 17:10:02 CET 2015)  (40/99 to go)

   lapw0   (17:10:02) 18.526u 0.239s 0:18.99 98.7% 0+0k 15416+12552io 
 3pf+0w
   lapw1 -c(17:10:21) 0.321u 0.018s 0:00.40 82.5%  0+0k 
 3224+2504io 1pf+0w

   stop error
---I
 have checked out the lapw1.error , I found the following:

 'SELECT' - no energy limits found for atom   7  L= 0  
 'SELECT' - E-bottom   -8.58284   E-top -200.0 
===How
 can I solve this error? Your help is so appreciated.With best regardsMohammed



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Re: [Wien] lapw1.error

2015-02-03 Thread Peter Blaha
You made some error. It cannot be correct that one finds E-bottom for 
atom 7 at -8 Ry, but no E-top.


a) Your struct file is wrong ?  RMT om ???
b) initialization did not work. copy struct file in new directory and 
start again.


Other wise we need more details (case.struct)

Am 03.02.2015 um 17:27 schrieb Mohammed Abujafar:

Dear WIEN2k users,
Hi,
I am trying to do interface calculations.I have built my interface
without any problem.The initialization was done successfuly.When I start
running the scf I got the following:

  LAPW0 END
SELECT - Error


  stop error

--

  start (Tue Feb  3 17:10:02 CET 2015) with lapw0 (40/99 to go)

 cycle 1(Tue Feb  3 17:10:02 CET 2015)  (40/99 to go)


  lapw0 (17:10:02) 18.526u 0.239s 0:18.99 98.7% 0+0k 15416+12552io 
3pf+0w
  lapw1 -c  (17:10:21) 0.321u 0.018s 0:00.40 82.5%  0+0k 3224+2504io 1pf+0w



  stop error


---
I have checked out the lapw1.error , I found the following:

  'SELECT' - no energy limits found for atom   7  L= 0
  'SELECT' - E-bottom   -8.58284   E-top -200.0
===
How can I solve this error? Your help is so appreciated.
With best regards
Mohammed





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--
Peter Blaha
Inst.Materials Chemistry
TU Vienna
Getreidemarkt 9
A-1060 Vienna
Austria
+43-1-5880115671
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Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-10 Thread Pavel Ondracka
On Thu, 2014-10-09 at 08:02 -0500, Laurence Marks wrote:
 I am not sure what exactly you are trying to do. It looks like you
 have some approximation to a Si doped amorphous TiO2 structure. The
 BVS looks reasonable, so this may have come from some other code.

Yeah, the structure was produced by simulated annealing done by other
code and I want to calculate band gap and optical constants with Wien2k
using mBJ. At the moment I'm just trying to converge the case with LDA
before I initialize mBJ.

 
 One thing odd is the RMT for Si of 1.44 which may very well lead to
 problems. This is actually close to what setrmt is giving. I think
 there may be a bug here in setrmt, Peter can say more. The small Si
 RMT is why you are losing core electrons.
 
 
 One thing you can do is (after at least one pass) do x RMTCheck.
 This will show the magnitude of the discontinuity at the RMT. I have
 seen that the discontinuities of different types of atoms should be
 roughly the same, and I suspect that in your case they are not. 
 
Looking at the output of x RMTCheck (attached) the Si atom doesn't seem
to stand out too much, but I don't have any idea what roughly the same
means in this case. Can you have a look please? At the moment I have a
converged LDA case with the Si RMT = 1.44 and ecut -10.2 (no warnings)
and I'm wondering if I can continue with mBJ or rather restart with
different RMTs and higher ecut (e.g. -7.2).
 
 Without running your case myself, I would want to use
 
 
 cp case.struct Hold.struct
 setrmt case -a Ti:1.7,Si:1.6,O:1.4 ; cp *set* *.struct
 
 
 case is the name and the initial cp is because sometimes setrmt can be
 slightly buggy and get confused about decimal points.
 
 
 This initialized for me without warning with -ecut -7.2 and only the
 Si 2p as semicore not the 2s as well.

After playing with this a little bit more it seems that the old scheme
in setrmt is actually giving better results in my case:

new: O:1.57 Ti:1.74 Si:1.44
old: O:1.56 Ti:1.76 Si:1.56

The O and Ti RMTs are quite similar so I have no idea why the Si RMT is
so much lower with the new scheme.
BTW with the old scheme I can get no warning also with only 2p states. 
 
 N.B., you may want to increase nband at the bottom of case.in1c to
 something like 480 or 512, increase emin to 2.5, only use one k-point
 and for LDA with these RMTs I suspect that a RKMAX of 6 is fine.

Did you meant increase emax to 2.5?

Anyway this is really helpful, thank you very much.
 
 
 On Thu, Oct 9, 2014 at 7:01 AM, Pavel Ondracka
 pavel.ondra...@email.cz wrote:
 On Thu, 2014-10-09 at 06:23 -0500, Laurence Marks wrote:
  Why are you using P1? You have made everything much slower
 and less
  efficient.
 
  Beyond this it is hard to guess.
 
 Well, P1 is what I get during the initialization with sgrup.
 
 In the meantime I managed to get it running by removing -it
 switch (two
 successful iterations so far), so will see if it actually
 stays working.
 
 Best regards
 Pavel Ondračka
 
  __
  Professor Laurence Marks
  Department of Materials Science and Engineering
  Northwestern University
  www.numis.northwestern.edu
  MURI4D.numis.northwestern.edu
  Co-Editor, Acta Cryst A
  Research is to see what everybody else has seen, and to
 think what
  nobody else has thought
  Albert Szent-Gyorgi
 
  Dear Wien2k mailing list,
 
  I have a problem with crash in parallel lapw1. It crash with
 SECLIT -
  Error in Cholesky output in stderr. Looking at tail of
 corresponding
  case.output1_2 I see:
 
  Time for los  (hamilt, cpu/wall) :  0.8
  5.6
  Time for alm (hns) :  4.2
  Time for vector  (hns) : 14.8
  Time for vector2 (hns) : 14.0
  Time for VxV (hns) :211.3
  Wall Time for VxV(hns) :  2.8
   reading Afacts  -1  0.000E+000
  :seclit:  estimate of singular value, factor:   0.6527E+00
 0.1000E-14
  :seclit:  min(sproj(ne+1:2ne))   0.3110E-02
   WARNING: INFO (Cholesky) =  679
 
  I found some suggestions for Cholesky errors here:
  http://www.mail-archive.com/wien%
  40zeus.theochem.tuwien.ac.at/msg02400.html
  however I'm quite sure my struct is OK, RKmax is default 7
 (which
  should
  be reasonable for compound with Si Ti and O) and neither can
 I spot
  any
  problems in my in1 file.
 
  This happens in second scf cycle. I'm using a LDA potential
 and
  everything was initialized to the default in init_lapw
 (except 

Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-10 Thread Laurence Marks
I forgot that your case has no inversion symmetry -- you need to use x
RMTCheck -c. Please send me that output so I can make educated guesses.

If you are using -it then increasing nband and emax can help. The iterative
methods use an expansion in terms of the previous eigensolutions, both
occupied and some unoccupied. If this expansion is not adequate I am
pretty certain one starts to get ghostbands and many other problems. (This
is more intuition and experience than any proper math.)

I do know that for MSR1a one can often improve things a little by using
more solutions, the speed cost is very minor so long and you do not use
extreme increases. I also prefer -noHinv, but that is my personal view not
a general suggestion.

On Fri, Oct 10, 2014 at 4:03 AM, Pavel Ondracka pavel.ondra...@email.cz
wrote:

 On Thu, 2014-10-09 at 08:02 -0500, Laurence Marks wrote:
  I am not sure what exactly you are trying to do. It looks like you
  have some approximation to a Si doped amorphous TiO2 structure. The
  BVS looks reasonable, so this may have come from some other code.

 Yeah, the structure was produced by simulated annealing done by other
 code and I want to calculate band gap and optical constants with Wien2k
 using mBJ. At the moment I'm just trying to converge the case with LDA
 before I initialize mBJ.

 
  One thing odd is the RMT for Si of 1.44 which may very well lead to
  problems. This is actually close to what setrmt is giving. I think
  there may be a bug here in setrmt, Peter can say more. The small Si
  RMT is why you are losing core electrons.
 
 
  One thing you can do is (after at least one pass) do x RMTCheck.
  This will show the magnitude of the discontinuity at the RMT. I have
  seen that the discontinuities of different types of atoms should be
  roughly the same, and I suspect that in your case they are not.
 
 Looking at the output of x RMTCheck (attached) the Si atom doesn't seem
 to stand out too much, but I don't have any idea what roughly the same
 means in this case. Can you have a look please? At the moment I have a
 converged LDA case with the Si RMT = 1.44 and ecut -10.2 (no warnings)
 and I'm wondering if I can continue with mBJ or rather restart with
 different RMTs and higher ecut (e.g. -7.2).
 
  Without running your case myself, I would want to use
 
 
  cp case.struct Hold.struct
  setrmt case -a Ti:1.7,Si:1.6,O:1.4 ; cp *set* *.struct
 
 
  case is the name and the initial cp is because sometimes setrmt can be
  slightly buggy and get confused about decimal points.
 
 
  This initialized for me without warning with -ecut -7.2 and only the
  Si 2p as semicore not the 2s as well.

 After playing with this a little bit more it seems that the old scheme
 in setrmt is actually giving better results in my case:

 new: O:1.57 Ti:1.74 Si:1.44
 old: O:1.56 Ti:1.76 Si:1.56

 The O and Ti RMTs are quite similar so I have no idea why the Si RMT is
 so much lower with the new scheme.
 BTW with the old scheme I can get no warning also with only 2p states.
 
  N.B., you may want to increase nband at the bottom of case.in1c to
  something like 480 or 512, increase emin to 2.5, only use one k-point
  and for LDA with these RMTs I suspect that a RKMAX of 6 is fine.

 Did you meant increase emax to 2.5?

 Anyway this is really helpful, thank you very much.
 
 
  On Thu, Oct 9, 2014 at 7:01 AM, Pavel Ondracka
  pavel.ondra...@email.cz wrote:
  On Thu, 2014-10-09 at 06:23 -0500, Laurence Marks wrote:
   Why are you using P1? You have made everything much slower
  and less
   efficient.
  
   Beyond this it is hard to guess.
  
  Well, P1 is what I get during the initialization with sgrup.
 
  In the meantime I managed to get it running by removing -it
  switch (two
  successful iterations so far), so will see if it actually
  stays working.
 
  Best regards
  Pavel Ondračka
 
   __
   Professor Laurence Marks
   Department of Materials Science and Engineering
   Northwestern University
   www.numis.northwestern.edu
   MURI4D.numis.northwestern.edu
   Co-Editor, Acta Cryst A
   Research is to see what everybody else has seen, and to
  think what
   nobody else has thought
   Albert Szent-Gyorgi
  
   Dear Wien2k mailing list,
  
   I have a problem with crash in parallel lapw1. It crash with
  SECLIT -
   Error in Cholesky output in stderr. Looking at tail of
  corresponding
   case.output1_2 I see:
  
   Time for los  (hamilt, cpu/wall) :  0.8
   5.6
   Time for alm (hns) :  4.2
   Time for vector  (hns) : 14.8
   Time for vector2 (hns) : 14.0
   Time for VxV (hns) :211.3
   Wall 

Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-10 Thread Pavel Ondračka
Laurence Marks píše v Pá 10. 10. 2014 v 09:03 -0500:
 I forgot that your case has no inversion symmetry -- you need to use
 x RMTCheck -c. Please send me that output so I can make educated
 guesses.

x RMTCheck -c output attached.
 
 
 If you are using -it then increasing nband and emax can help. The
 iterative methods use an expansion in terms of the previous
 eigensolutions, both occupied and some unoccupied. If this expansion
 is not adequate I am pretty certain one starts to get ghostbands and
 many other problems. (This is more intuition and experience than any
 proper math.)
 
 
 I do know that for MSR1a one can often improve things a little by
 using more solutions, the speed cost is very minor so long and you do
 not use extreme increases. I also prefer -noHinv, but that is my
 personal view not a general suggestion.



Atom   1 O| RMT Charge   1.287 Grad   2.661 | Step Charge  0.00397, 0.0 
Gradient   0.1141, -0.1141 O   
Atom   2 O| RMT Charge   1.291 Grad   2.673 | Step Charge  0.00437, 0.0 
Gradient   0.1144, -0.1144 O   
Atom   3 O| RMT Charge   1.312 Grad   2.686 | Step Charge  0.00492, 0.0 
Gradient   0.1113, -0.1113 O   
Atom   4 O| RMT Charge   1.261 Grad   2.634 | Step Charge  0.00654, 0.0 
Gradient   0.1102, -0.1102 O   
Atom   5 O| RMT Charge   1.283 Grad   2.659 | Step Charge  0.00461, 0.0 
Gradient   0.1137, -0.1137 O   
Atom   6 O| RMT Charge   1.258 Grad   2.653 | Step Charge  0.00199, 0.0 
Gradient   0.1116, -0.1116 O   
Atom   7 O| RMT Charge   1.298 Grad   2.655 | Step Charge  0.00656, 0.0 
Gradient   0.1158, -0.1158 O   
Atom   8 O| RMT Charge   1.260 Grad   2.630 | Step Charge  0.00616, 0.0 
Gradient   0.1092, -0.1092 O   
Atom   9 O| RMT Charge   1.275 Grad   2.647 | Step Charge  0.00579, 0.0 
Gradient   0.1121, -0.1121 O   
Atom  10 O| RMT Charge   1.279 Grad   2.654 | Step Charge  0.00568, 0.0 
Gradient   0.1145, -0.1145 O   
Atom  11 O| RMT Charge   1.266 Grad   2.628 | Step Charge  0.00687, 0.0 
Gradient   0.1127, -0.1125 O   
Atom  12 O| RMT Charge   1.268 Grad   2.659 | Step Charge  0.00259, 0.0 
Gradient   0.1113, -0.1113 O   
Atom  13 O| RMT Charge   1.279 Grad   2.666 | Step Charge  0.00305, 0.0 
Gradient   0.1133, -0.1133 O   
Atom  14 O| RMT Charge   1.323 Grad   2.705 | Step Charge  0.00318, 0.0 
Gradient   0.1131, -0.1131 O   
Atom  15 O| RMT Charge   1.289 Grad   2.643 | Step Charge  0.00755, 0.0 
Gradient   0.1158, -0.1154 O   
Atom  16 O| RMT Charge   1.275 Grad   2.662 | Step Charge  0.00435, 0.0 
Gradient   0.1133, -0.1133 O   
Atom  17 O| RMT Charge   1.300 Grad   2.670 | Step Charge  0.00486, 0.0 
Gradient   0.1154, -0.1154 O   
Atom  18 O| RMT Charge   1.283 Grad   2.668 | Step Charge  0.00422, 0.0 
Gradient   0.1139, -0.1139 O   
Atom  19 O| RMT Charge   1.275 Grad   2.661 | Step Charge  0.00395, 0.0 
Gradient   0.1127, -0.1127 O   
Atom  20 O| RMT Charge   1.297 Grad   2.666 | Step Charge  0.00314, 0.0 
Gradient   0.1152, -0.1152 O   
Atom  21 O| RMT Charge   1.286 Grad   2.659 | Step Charge  0.00493, 0.0 
Gradient   0.1134, -0.1134 O   
Atom  22 O| RMT Charge   1.341 Grad   2.723 | Step Charge  0.00295, 0.0 
Gradient   0.1125, -0.1125 O   
Atom  23 O| RMT Charge   1.273 Grad   2.636 | Step Charge  0.00653, 0.0 
Gradient   0.1121, -0.1121 O   
Atom  24 O| RMT Charge   1.285 Grad   2.672 | Step Charge  0.00336, 0.0 
Gradient   0.1140, -0.1140 O   
Atom  25 O| RMT Charge   1.268 Grad   2.634 | Step Charge  0.00673, 0.0 
Gradient   0.1137, -0.1130 O   
Atom  26 O| RMT Charge   1.312 Grad   2.695 | Step Charge  0.00205, 0.0 
Gradient   0.1102, -0.1102 O   
Atom  27 O| RMT Charge   1.292 Grad   2.657 | Step Charge  0.00493, 0.0 
Gradient   0.1149, -0.1149 O   
Atom  28 O| RMT Charge   1.257 Grad   2.622 | Step Charge  0.00719, 0.0 
Gradient   0.1109, -0.1104 O   
Atom  29 O| RMT Charge   1.262 Grad   2.653 | Step Charge  0.00207, 0.0 
Gradient   0.1114, -0.1114 O   
Atom  30 O| RMT Charge   1.265 Grad   2.653 | Step Charge  0.00466, 0.0 
Gradient   0.1113, -0.1113 O   
Atom  31 O| RMT Charge   1.258 Grad   2.646 | Step Charge  0.00242, 0.0 
Gradient   0.1106, -0.1106 O   
Atom  32 O| RMT Charge   1.277 Grad   2.654 | Step Charge  0.00392, 0.0 
Gradient   0.1123, -0.1123 O   
Atom  33 Ti   | RMT Charge   1.003 Grad   2.070 | Step Charge  0.01565, 0.0 
Gradient   0.1137, -0.1120 Ti  
Atom  34 Ti   | RMT Charge   0.961 Grad   2.094 | Step Charge  0.00946, 0.0 
Gradient   0.1093, -0.1090 Ti  
Atom  35 Ti   | RMT Charge   0.963 Grad   2.091 | Step Charge  0.00834, 0.0 
Gradient   0.1092, -0.1092 Ti  
Atom  36 Ti   | RMT Charge   0.988 Grad   2.081 | Step Charge  0.00779, 0.0 
Gradient   0.1109, -0.1109 Ti  
Atom  37 Ti   | RMT Charge   0.993 Grad   2.080 | Step Charge  0.01081, 0.0 
Gradient  

Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-10 Thread Laurence Marks
What RMT's?

On Fri, Oct 10, 2014 at 11:18 AM, Pavel Ondračka pavel.ondra...@email.cz
wrote:

 Laurence Marks píše v Pá 10. 10. 2014 v 09:03 -0500:
  I forgot that your case has no inversion symmetry -- you need to use
  x RMTCheck -c. Please send me that output so I can make educated
  guesses.

 x RMTCheck -c output attached.
 
 
  If you are using -it then increasing nband and emax can help. The
  iterative methods use an expansion in terms of the previous
  eigensolutions, both occupied and some unoccupied. If this expansion
  is not adequate I am pretty certain one starts to get ghostbands and
  many other problems. (This is more intuition and experience than any
  proper math.)
 
 
  I do know that for MSR1a one can often improve things a little by
  using more solutions, the speed cost is very minor so long and you do
  not use extreme increases. I also prefer -noHinv, but that is my
  personal view not a general suggestion.






-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
Corrosion in 4D: MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
Research is to see what everybody else has seen, and to think what nobody
else has thought
Albert Szent-Gyorgi
___
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http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
SEARCH the MAILING-LIST at:  
http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html


Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-10 Thread Pavel Ondračka
Laurence Marks píše v Pá 10. 10. 2014 v 11:23 -0500:
 What RMT's?

This is still with the original RMTs, e.g. the ones which are produced
by setrmt new scheme.

O:1.57 Ti:1.74 Si:1.44
 
 On Fri, Oct 10, 2014 at 11:18 AM, Pavel Ondračka
 pavel.ondra...@email.cz wrote:
 Laurence Marks píše v Pá 10. 10. 2014 v 09:03 -0500:
  I forgot that your case has no inversion symmetry -- you
 need to use
  x RMTCheck -c. Please send me that output so I can make
 educated
  guesses.
 
 x RMTCheck -c output attached.
 
 
  If you are using -it then increasing nband and emax can
 help. The
  iterative methods use an expansion in terms of the previous
  eigensolutions, both occupied and some unoccupied. If this
 expansion
  is not adequate I am pretty certain one starts to get
 ghostbands and
  many other problems. (This is more intuition and experience
 than any
  proper math.)
 
 
  I do know that for MSR1a one can often improve things a
 little by
  using more solutions, the speed cost is very minor so long
 and you do
  not use extreme increases. I also prefer -noHinv, but that
 is my
  personal view not a general suggestion.
 
 
 
 
 
 
 
 -- 
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu
 Corrosion in 4D: MURI4D.numis.northwestern.edu
 Co-Editor, Acta Cryst A
 Research is to see what everybody else has seen, and to think what
 nobody else has thought
 Albert Szent-Gyorgi
 ___
 Wien mailing list
 Wien@zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
 SEARCH the MAILING-LIST at:  
 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html



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Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-10 Thread Laurence Marks
Thanks.

I don't see anything obviously problematic. The only way I know to check
RMT values is to minimize the energy with a constant RKMAX*min(RMT) (Peter
might know a better one). My observation is that is approximately when the
last term on the right of the output, the step in the gradient, is roughly
the
same for different atom types. It should also be not too large.

Your value of 0.1 for Ti  O looks fine to me, both small enough and
suggesting that your RKMAX is big enough. There is a reasonable amount of
charge at the RMT for O ( ~1.3) which is to be expected, less for the Ti,
again fine. The value for the gradient for Si of 0.576 is slightly
surprising to me, I guess most of the Si valence density is outside the RMT
except for the 2s (guessing).

Without real proof I would be slightly cautious of how the Si is being
treated. It is probably fine.

On Fri, Oct 10, 2014 at 11:47 AM, Pavel Ondračka pavel.ondra...@email.cz
wrote:

 Laurence Marks píše v Pá 10. 10. 2014 v 11:23 -0500:
  What RMT's?

 This is still with the original RMTs, e.g. the ones which are produced
 by setrmt new scheme.

 O:1.57 Ti:1.74 Si:1.44
 
  On Fri, Oct 10, 2014 at 11:18 AM, Pavel Ondračka
  pavel.ondra...@email.cz wrote:
  Laurence Marks píše v Pá 10. 10. 2014 v 09:03 -0500:
   I forgot that your case has no inversion symmetry -- you
  need to use
   x RMTCheck -c. Please send me that output so I can make
  educated
   guesses.
 
  x RMTCheck -c output attached.
  
  
   If you are using -it then increasing nband and emax can
  help. The
   iterative methods use an expansion in terms of the previous
   eigensolutions, both occupied and some unoccupied. If this
  expansion
   is not adequate I am pretty certain one starts to get
  ghostbands and
   many other problems. (This is more intuition and experience
  than any
   proper math.)
  
  
   I do know that for MSR1a one can often improve things a
  little by
   using more solutions, the speed cost is very minor so long
  and you do
   not use extreme increases. I also prefer -noHinv, but that
  is my
   personal view not a general suggestion.
 
 
 
 
 
 
 
  --
  Professor Laurence Marks
  Department of Materials Science and Engineering
  Northwestern University
  www.numis.northwestern.edu
  Corrosion in 4D: MURI4D.numis.northwestern.edu
  Co-Editor, Acta Cryst A
  Research is to see what everybody else has seen, and to think what
  nobody else has thought
  Albert Szent-Gyorgi
  ___
  Wien mailing list
  Wien@zeus.theochem.tuwien.ac.at
  http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
  SEARCH the MAILING-LIST at:
 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html



 ___
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 Wien@zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
 SEARCH the MAILING-LIST at:
 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html




-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
Corrosion in 4D: MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
Research is to see what everybody else has seen, and to think what nobody
else has thought
Albert Szent-Gyorgi
___
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Wien@zeus.theochem.tuwien.ac.at
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
SEARCH the MAILING-LIST at:  
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Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-10 Thread Pavel Ondračka
Laurence Marks píše v Pá 10. 10. 2014 v 11:59 -0500:
 Thanks.
 
 
 I don't see anything obviously problematic. The only way I know to
 check RMT values is to minimize the energy with a constant
 RKMAX*min(RMT) (Peter might know a better one). My observation is that
 is approximately when the last term on the right of the output, the
 step in the gradient, is roughly the
 same for different atom types. It should also be not too large.
 
 
 Your value of 0.1 for Ti  O looks fine to me, both small enough and
 suggesting that your RKMAX is big enough. There is a reasonable amount
 of charge at the RMT for O ( ~1.3) which is to be expected, less for
 the Ti, again fine. The value for the gradient for Si of 0.576 is
 slightly surprising to me, I guess most of the Si valence density is
 outside the RMT except for the 2s (guessing).
 
 
 Without real proof I would be slightly cautious of how the Si is being
 treated. It is probably fine.

OK, ATM I'm running the calculation again with different RMTs just to be
sure and if the both results are consistent, I will continue with mBJ.

Thanks a lot for your help.


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[Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-09 Thread Pavel Ondracka
Dear Wien2k mailing list,

I have a problem with crash in parallel lapw1. It crash with SECLIT -
Error in Cholesky output in stderr. Looking at tail of corresponding
case.output1_2 I see:

Time for los  (hamilt, cpu/wall) :  0.8 5.6
Time for alm (hns) :  4.2
Time for vector  (hns) : 14.8
Time for vector2 (hns) : 14.0
Time for VxV (hns) :211.3
Wall Time for VxV(hns) :  2.8
 reading Afacts  -1  0.000E+000
:seclit:  estimate of singular value, factor:   0.6527E+00  0.1000E-14
:seclit:  min(sproj(ne+1:2ne))   0.3110E-02
 WARNING: INFO (Cholesky) =  679

I found some suggestions for Cholesky errors here:
http://www.mail-archive.com/wien%
40zeus.theochem.tuwien.ac.at/msg02400.html
however I'm quite sure my struct is OK, RKmax is default 7 (which should
be reasonable for compound with Si Ti and O) and neither can I spot any
problems in my in1 file.

This happens in second scf cycle. I'm using a LDA potential and
everything was initialized to the default in init_lapw (except for
energy seperation between core/valence which was set to -10.2 because
some Si core electrons were leaking out of MT sphere, and reduced number
of k-points).

I'm attaching my struct and in1 files. Any ideas?

Best regards
Pavel Ondračka
WFFIL  EF=.285229471800   (WFFIL, WFPRI, ENFIL, SUPWF) 
  7.00   104 (R-MT*K-MAX; MAX L IN WF, V-NMT
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global APW/LAPW)
 0   -1.53  0.002 CONT 1
 00.30  0.000 CONT 1
 10.30  0.000 CONT 1
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, 

Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-09 Thread Laurence Marks
Why are you using P1? You have made everything much slower and less
efficient.

Beyond this it is hard to guess.

___
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
Research is to see what everybody else has seen, and to think what nobody
else has thought
Albert Szent-Gyorgi
Dear Wien2k mailing list,

I have a problem with crash in parallel lapw1. It crash with SECLIT -
Error in Cholesky output in stderr. Looking at tail of corresponding
case.output1_2 I see:

Time for los  (hamilt, cpu/wall) :  0.8 5.6
Time for alm (hns) :  4.2
Time for vector  (hns) : 14.8
Time for vector2 (hns) : 14.0
Time for VxV (hns) :211.3
Wall Time for VxV(hns) :  2.8
 reading Afacts  -1  0.000E+000
:seclit:  estimate of singular value, factor:   0.6527E+00  0.1000E-14
:seclit:  min(sproj(ne+1:2ne))   0.3110E-02
 WARNING: INFO (Cholesky) =  679

I found some suggestions for Cholesky errors here:
http://www.mail-archive.com/wien%
40zeus.theochem.tuwien.ac.at/msg02400.html
however I'm quite sure my struct is OK, RKmax is default 7 (which should
be reasonable for compound with Si Ti and O) and neither can I spot any
problems in my in1 file.

This happens in second scf cycle. I'm using a LDA potential and
everything was initialized to the default in init_lapw (except for
energy seperation between core/valence which was set to -10.2 because
some Si core electrons were leaking out of MT sphere, and reduced number
of k-points).

I'm attaching my struct and in1 files. Any ideas?

Best regards
Pavel Ondračka
___
Wien mailing list
Wien@zeus.theochem.tuwien.ac.at
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
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http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html


Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-09 Thread Pavel Ondracka
On Thu, 2014-10-09 at 06:23 -0500, Laurence Marks wrote:
 Why are you using P1? You have made everything much slower and less
 efficient.
 
 Beyond this it is hard to guess.
 
Well, P1 is what I get during the initialization with sgrup.

In the meantime I managed to get it running by removing -it switch (two
successful iterations so far), so will see if it actually stays working.

Best regards
Pavel Ondračka

 __
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu
 MURI4D.numis.northwestern.edu
 Co-Editor, Acta Cryst A
 Research is to see what everybody else has seen, and to think what
 nobody else has thought
 Albert Szent-Gyorgi
 
 Dear Wien2k mailing list,
 
 I have a problem with crash in parallel lapw1. It crash with SECLIT -
 Error in Cholesky output in stderr. Looking at tail of corresponding
 case.output1_2 I see:
 
 Time for los  (hamilt, cpu/wall) :  0.8 5.6
 Time for alm (hns) :  4.2
 Time for vector  (hns) : 14.8
 Time for vector2 (hns) : 14.0
 Time for VxV (hns) :211.3
 Wall Time for VxV(hns) :  2.8
  reading Afacts  -1  0.000E+000
 :seclit:  estimate of singular value, factor:   0.6527E+00  0.1000E-14
 :seclit:  min(sproj(ne+1:2ne))   0.3110E-02
  WARNING: INFO (Cholesky) =  679
 
 I found some suggestions for Cholesky errors here:
 http://www.mail-archive.com/wien%
 40zeus.theochem.tuwien.ac.at/msg02400.html
 however I'm quite sure my struct is OK, RKmax is default 7 (which
 should
 be reasonable for compound with Si Ti and O) and neither can I spot
 any
 problems in my in1 file.
 
 This happens in second scf cycle. I'm using a LDA potential and
 everything was initialized to the default in init_lapw (except for
 energy seperation between core/valence which was set to -10.2 because
 some Si core electrons were leaking out of MT sphere, and reduced
 number
 of k-points).
 
 I'm attaching my struct and in1 files. Any ideas?
 
 Best regards
 Pavel Ondračka
 
 ___
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 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
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Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-09 Thread Laurence Marks
I am not sure what exactly you are trying to do. It looks like you have
some approximation to a Si doped amorphous TiO2 structure. The BVS looks
reasonable, so this may have come from some other code.

One thing odd is the RMT for Si of 1.44 which may very well lead to
problems. This is actually close to what setrmt is giving. I think there
may be a bug here in setrmt, Peter can say more. The small Si RMT is why
you are losing core electrons.

One thing you can do is (after at least one pass) do x RMTCheck. This
will show the magnitude of the discontinuity at the RMT. I have seen that
the discontinuities of different types of atoms should be roughly the same,
and I suspect that in your case they are not.

Without running your case myself, I would want to use

cp case.struct Hold.struct
setrmt case -a Ti:1.7,Si:1.6,O:1.4 ; cp *set* *.struct

case is the name and the initial cp is because sometimes setrmt can be
slightly buggy and get confused about decimal points.

This initialized for me without warning with -ecut -7.2 and only the Si 2p
as semicore not the 2s as well.

N.B., you may want to increase nband at the bottom of case.in1c to
something like 480 or 512, increase emin to 2.5, only use one k-point and
for LDA with these RMTs I suspect that a RKMAX of 6 is fine.


On Thu, Oct 9, 2014 at 7:01 AM, Pavel Ondracka pavel.ondra...@email.cz
wrote:

 On Thu, 2014-10-09 at 06:23 -0500, Laurence Marks wrote:
  Why are you using P1? You have made everything much slower and less
  efficient.
 
  Beyond this it is hard to guess.
 
 Well, P1 is what I get during the initialization with sgrup.

 In the meantime I managed to get it running by removing -it switch (two
 successful iterations so far), so will see if it actually stays working.

 Best regards
 Pavel Ondračka

  __
  Professor Laurence Marks
  Department of Materials Science and Engineering
  Northwestern University
  www.numis.northwestern.edu
  MURI4D.numis.northwestern.edu
  Co-Editor, Acta Cryst A
  Research is to see what everybody else has seen, and to think what
  nobody else has thought
  Albert Szent-Gyorgi
 
  Dear Wien2k mailing list,
 
  I have a problem with crash in parallel lapw1. It crash with SECLIT -
  Error in Cholesky output in stderr. Looking at tail of corresponding
  case.output1_2 I see:
 
  Time for los  (hamilt, cpu/wall) :  0.8 5.6
  Time for alm (hns) :  4.2
  Time for vector  (hns) : 14.8
  Time for vector2 (hns) : 14.0
  Time for VxV (hns) :211.3
  Wall Time for VxV(hns) :  2.8
   reading Afacts  -1  0.000E+000
  :seclit:  estimate of singular value, factor:   0.6527E+00  0.1000E-14
  :seclit:  min(sproj(ne+1:2ne))   0.3110E-02
   WARNING: INFO (Cholesky) =  679
 
  I found some suggestions for Cholesky errors here:
  http://www.mail-archive.com/wien%
  40zeus.theochem.tuwien.ac.at/msg02400.html
  however I'm quite sure my struct is OK, RKmax is default 7 (which
  should
  be reasonable for compound with Si Ti and O) and neither can I spot
  any
  problems in my in1 file.
 
  This happens in second scf cycle. I'm using a LDA potential and
  everything was initialized to the default in init_lapw (except for
  energy seperation between core/valence which was set to -10.2 because
  some Si core electrons were leaking out of MT sphere, and reduced
  number
  of k-points).
 
  I'm attaching my struct and in1 files. Any ideas?
 
  Best regards
  Pavel Ondračka
 
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  Wien@zeus.theochem.tuwien.ac.at
  http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
  SEARCH the MAILING-LIST at:
 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html


 ___
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 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
 SEARCH the MAILING-LIST at:
 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html




-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
Corrosion in 4D: MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
Research is to see what everybody else has seen, and to think what nobody
else has thought
Albert Szent-Gyorgi
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http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
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Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-09 Thread Laurence Marks
Addendum: I should not call it a bug in setrmt. That code does an
amazingly good job of estimating good RMTs to use. However, there are times
when other RMTs can be better.

___
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
Research is to see what everybody else has seen, and to think what nobody
else has thought
Albert Szent-Gyorgi
On Oct 9, 2014 8:02 AM, Laurence Marks l-ma...@northwestern.edu wrote:

 I am not sure what exactly you are trying to do. It looks like you have
 some approximation to a Si doped amorphous TiO2 structure. The BVS looks
 reasonable, so this may have come from some other code.

 One thing odd is the RMT for Si of 1.44 which may very well lead to
 problems. This is actually close to what setrmt is giving. I think there
 may be a bug here in setrmt, Peter can say more. The small Si RMT is why
 you are losing core electrons.

 One thing you can do is (after at least one pass) do x RMTCheck. This
 will show the magnitude of the discontinuity at the RMT. I have seen that
 the discontinuities of different types of atoms should be roughly the same,
 and I suspect that in your case they are not.

 Without running your case myself, I would want to use

 cp case.struct Hold.struct
 setrmt case -a Ti:1.7,Si:1.6,O:1.4 ; cp *set* *.struct

 case is the name and the initial cp is because sometimes setrmt can be
 slightly buggy and get confused about decimal points.

 This initialized for me without warning with -ecut -7.2 and only the Si 2p
 as semicore not the 2s as well.

 N.B., you may want to increase nband at the bottom of case.in1c to
 something like 480 or 512, increase emin to 2.5, only use one k-point and
 for LDA with these RMTs I suspect that a RKMAX of 6 is fine.


 On Thu, Oct 9, 2014 at 7:01 AM, Pavel Ondracka pavel.ondra...@email.cz
 wrote:

 On Thu, 2014-10-09 at 06:23 -0500, Laurence Marks wrote:
  Why are you using P1? You have made everything much slower and less
  efficient.
 
  Beyond this it is hard to guess.
 
 Well, P1 is what I get during the initialization with sgrup.

 In the meantime I managed to get it running by removing -it switch (two
 successful iterations so far), so will see if it actually stays working.

 Best regards
 Pavel Ondračka

  __
  Professor Laurence Marks
  Department of Materials Science and Engineering
  Northwestern University
  www.numis.northwestern.edu
  MURI4D.numis.northwestern.edu
  Co-Editor, Acta Cryst A
  Research is to see what everybody else has seen, and to think what
  nobody else has thought
  Albert Szent-Gyorgi
 
  Dear Wien2k mailing list,
 
  I have a problem with crash in parallel lapw1. It crash with SECLIT -
  Error in Cholesky output in stderr. Looking at tail of corresponding
  case.output1_2 I see:
 
  Time for los  (hamilt, cpu/wall) :  0.8 5.6
  Time for alm (hns) :  4.2
  Time for vector  (hns) : 14.8
  Time for vector2 (hns) : 14.0
  Time for VxV (hns) :211.3
  Wall Time for VxV(hns) :  2.8
   reading Afacts  -1  0.000E+000
  :seclit:  estimate of singular value, factor:   0.6527E+00  0.1000E-14
  :seclit:  min(sproj(ne+1:2ne))   0.3110E-02
   WARNING: INFO (Cholesky) =  679
 
  I found some suggestions for Cholesky errors here:
  http://www.mail-archive.com/wien%
  40zeus.theochem.tuwien.ac.at/msg02400.html
  however I'm quite sure my struct is OK, RKmax is default 7 (which
  should
  be reasonable for compound with Si Ti and O) and neither can I spot
  any
  problems in my in1 file.
 
  This happens in second scf cycle. I'm using a LDA potential and
  everything was initialized to the default in init_lapw (except for
  energy seperation between core/valence which was set to -10.2 because
  some Si core electrons were leaking out of MT sphere, and reduced
  number
  of k-points).
 
  I'm attaching my struct and in1 files. Any ideas?
 
  Best regards
  Pavel Ondračka
 
  ___
  Wien mailing list
  Wien@zeus.theochem.tuwien.ac.at
  http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
  SEARCH the MAILING-LIST at:
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 ___
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 Wien@zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
 SEARCH the MAILING-LIST at:
 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html




 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu
 Corrosion in 4D: MURI4D.numis.northwestern.edu
 Co-Editor, Acta Cryst A
 Research is to see what everybody else has seen, and to think what nobody
 else has thought
 Albert Szent-Gyorgi


Re: [Wien] lapw1 crash with SECLIT - Error in Cholesky

2014-10-09 Thread Peter Blaha
Yes, clearly the problem is in the iterative diagonalization. It can be 
that this is connected with the low lying Si 2s orbital.


Either run without  -it
ortry   -it -noHns
ortry to modify (?increase) Emax in the last line of case.in1 with -it



On 10/09/2014 02:01 PM, Pavel Ondracka wrote:

On Thu, 2014-10-09 at 06:23 -0500, Laurence Marks wrote:

Why are you using P1? You have made everything much slower and less
efficient.

Beyond this it is hard to guess.


Well, P1 is what I get during the initialization with sgrup.

In the meantime I managed to get it running by removing -it switch (two
successful iterations so far), so will see if it actually stays working.

Best regards
Pavel Ondračka


__
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
Research is to see what everybody else has seen, and to think what
nobody else has thought
Albert Szent-Gyorgi

Dear Wien2k mailing list,

I have a problem with crash in parallel lapw1. It crash with SECLIT -
Error in Cholesky output in stderr. Looking at tail of corresponding
case.output1_2 I see:

Time for los  (hamilt, cpu/wall) :  0.8 5.6
Time for alm (hns) :  4.2
Time for vector  (hns) : 14.8
Time for vector2 (hns) : 14.0
Time for VxV (hns) :211.3
Wall Time for VxV(hns) :  2.8
  reading Afacts  -1  0.000E+000
:seclit:  estimate of singular value, factor:   0.6527E+00  0.1000E-14
:seclit:  min(sproj(ne+1:2ne))   0.3110E-02
  WARNING: INFO (Cholesky) =  679

I found some suggestions for Cholesky errors here:
http://www.mail-archive.com/wien%
40zeus.theochem.tuwien.ac.at/msg02400.html
however I'm quite sure my struct is OK, RKmax is default 7 (which
should
be reasonable for compound with Si Ti and O) and neither can I spot
any
problems in my in1 file.

This happens in second scf cycle. I'm using a LDA potential and
everything was initialized to the default in init_lapw (except for
energy seperation between core/valence which was set to -10.2 because
some Si core electrons were leaking out of MT sphere, and reduced
number
of k-points).

I'm attaching my struct and in1 files. Any ideas?

Best regards
Pavel Ondračka

___
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--

  P.Blaha
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: bl...@theochem.tuwien.ac.atWIEN2k: http://www.wien2k.at
WWW:   http://www.imc.tuwien.ac.at/staff/tc_group_e.php
--
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[Wien] lapw1 hangs over nfs

2013-12-19 Thread Oliver Albertini
Hello,

I am running k-point parallel over nfs, and every few iterations, a k-point
process will hang, leaving 'ghost processes' visible under the top command.
These processes have 0% cpu utilization.

Looking at the error files, the k-point in question will have this type of
error:

$ cat dnlapw1_22.error
Error in LAPW1
 'INILPW' - can't open unit:  11

 'INILPW' -filename: AgMgOCo.energydn_22

 'INILPW' -  status: unknown  form: formatted

 'LAPW1' - INILPW aborted unsuccessfully.
 'Unknow' - Unknown signal received


However, case.energydn_22 is present, but empty.

I suspect that this could be related to network speed. Has anyone had a
similar experience?

Sincerely,

Oliver  Albertini
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Re: [Wien] lapw1 hangs over nfs

2013-12-19 Thread Peter Blaha
This can happen for slow networks or not well configured ones (not 
enough NFS daemons, ...)


a) k-parallelization makes only sense up to a certain granularity. This 
means, you cannot expect to make the parallelization faster at a 
certain level of processors. For instance when you have 100 k-points and 
parallelization with 20 cores takes 20 seconds for lapw1 (i.e. 5 
k-points take just 20 sec/core); for sure in most setups parallelization 
with 50 cores will be even slower or even fail (from time to time 
because of network problems).


b) One can always reduce network load by defining a SCRATCH directory on 
the local nodes. These directories must exist and in that case your 
k-list and processor-list must be compatible (eg. 100 k and 20 cores, 
but not 16)


On 12/19/2013 11:16 PM, Oliver Albertini wrote:

Hello,

I am running k-point parallel over nfs, and every few iterations, a
k-point process will hang, leaving 'ghost processes' visible under the
top command. These processes have 0% cpu utilization.

Looking at the error files, the k-point in question will have this type
of error:

$ cat dnlapw1_22.error
Error in LAPW1
  'INILPW' - can't open unit:  11
  'INILPW' -filename: AgMgOCo.energydn_22
  'INILPW' -  status: unknown  form: formatted
  'LAPW1' - INILPW aborted unsuccessfully.
  'Unknow' - Unknown signal received


However, case.energydn_22 is present, but empty.

I suspect that this could be related to network speed. Has anyone had a
similar experience?

Sincerely,

Oliver  Albertini


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--

  P.Blaha
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: bl...@theochem.tuwien.ac.atWWW: 
http://info.tuwien.ac.at/theochem/

--
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[Wien] LAPW1 error (munmap_chunk)

2012-06-29 Thread David Holec
Dear all,

I am trying to perform a simple calculation using the attached struct
file, but unfortunately I am getting an error message I do not
understand. Could you please help me? (I am not sure whether there is
some problem with the code, setting of my calculation, or the
installation of the code.)

I am using Wien2k 11. on openSuSE 12.1 system with installed Intel
Composer 2011 (MKL+Fortran). The initialisation runs without any
problem, lapw0 finishes OK, but then lapw1 crashes:


LAPW0 END
*** glibc detected *** /home/david/software/WIEN2k/WIEN2k_11.1/lapw1:
munmap_chunk(): invalid pointer: 0x00de4220 ***
=== Backtrace: =
/lib64/libc.so.6(+0x766d6)[0x2b97ae46b6d6]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.so(mkl_serv_allocate+0x2fd)[0x2b97acad8ded]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_mc3.so(mkl_blas_dgemm_get_bufs+0xcc)[0x2b97b019316c]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.so(mkl_blas_dgemm_get_bufs+0x22)[0x2b97acadf792]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_mc3.so(mkl_blas_xdgemm_par+0x928)[0x2b97b01eff18]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.so(mkl_blas_xdgemm_par+0xd1)[0x2b97acae13a1]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_mc3.so(mkl_blas_dtrsm_left+0x3c4)[0x2b97b01be214]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_mc3.so(mkl_blas_xdtrsm+0x559)[0x2b97b01f5d19]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.so(mkl_blas_xdtrsm+0xb9)[0x2b97acae1889]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_thread.so(mkl_blas_dtrsm+0x4d9)[0x2b97abb16699]
/opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_lp64.so(dtrsm+0xe7)[0x2b97ab337217]
/home/david/software/WIEN2k/WIEN2k_11.1/lapw1[0x4665a8]
/home/david/software/WIEN2k/WIEN2k_11.1/lapw1[0x40eaa8]
/home/david/software/WIEN2k/WIEN2k_11.1/lapw1[0x443723]
/home/david/software/WIEN2k/WIEN2k_11.1/lapw1[0x404f4c]
/lib64/libc.so.6(__libc_start_main+0xed)[0x2b97ae41623d]
/home/david/software/WIEN2k/WIEN2k_11.1/lapw1[0x404e49]
=== Memory map: 
0040-005a7000 r-xp  08:03 5899779
  /home/david/software/WIEN2k/WIEN2k_11.1/lapw1
007a6000-007a7000 r--p 001a6000 08:03 5899779
  /home/david/software/WIEN2k/WIEN2k_11.1/lapw1
007a7000-007b6000 rw-p 001a7000 08:03 5899779
  /home/david/software/WIEN2k/WIEN2k_11.1/lapw1
007b6000-017b2000 rw-p  00:00 0  [heap]
2b97ab011000-2b97ab031000 r-xp  08:02 789099
  /lib64/ld-2.14.1.so
2b97ab031000-2b97ab032000 rw-p  00:00 0
2b97ab231000-2b97ab232000 r--p 0002 08:02 789099
  /lib64/ld-2.14.1.so
2b97ab232000-2b97ab233000 rw-p 00021000 08:02 789099
  /lib64/ld-2.14.1.so
2b97ab233000-2b97ab234000 rw-p  00:00 0
2b97ab234000-2b97ab7c2000 r-xp  08:02 1086327
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_lp64.so
2b97ab7c2000-2b97ab9c2000 ---p 0058e000 08:02 1086327
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_lp64.so
2b97ab9c2000-2b97ab9d rw-p 0058e000 08:02 1086327
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_lp64.so
2b97ab9d-2b97ab9d6000 rw-p  00:00 0
2b97ab9d6000-2b97ac6ce000 r-xp  08:02 1086329
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_thread.so
2b97ac6ce000-2b97ac8cd000 ---p 00cf8000 08:02 1086329
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_thread.so
2b97ac8cd000-2b97aca25000 rw-p 00cf7000 08:02 1086329
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_intel_thread.so
2b97aca25000-2b97aca28000 rw-p  00:00 0
2b97aca28000-2b97ad83f000 r-xp  08:02 1086321
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.so
2b97ad83f000-2b97ada3e000 ---p 00e17000 08:02 1086321
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.so
2b97ada3e000-2b97ada52000 rw-p 00e16000 08:02 1086321
  /opt/intel/composer_xe_2011_sp1.7.256/mkl/lib/intel64/libmkl_core.so
2b97ada52000-2b97ada62000 rw-p  00:00 0
2b97ada8f000-2b97adaa7000 r-xp  08:02 803205
  /lib64/libpthread-2.14.1.so
2b97adaa7000-2b97adca6000 ---p 00018000 08:02 803205
  /lib64/libpthread-2.14.1.so
2b97adca6000-2b97adca7000 r--p 00017000 08:02 803205
  /lib64/libpthread-2.14.1.so
2b97adca7000-2b97adca8000 rw-p 00018000 08:02 803205
  /lib64/libpthread-2.14.1.so
2b97adca8000-2b97adcad000 rw-p  00:00 0
2b97adcad000-2b97add03000 r-xp  08:02 803186
  /lib64/libm-2.14.1.so
2b97add03000-2b97adf02000 ---p 00056000 08:02 803186
  /lib64/libm-2.14.1.so
2b97adf02000-2b97adf03000 r--p 00055000 08:02 803186
  /lib64/libm-2.14.1.so
2b97adf03000-2b97adf04000 rw-p 00056000 08:02 803186
  /lib64/libm-2.14.1.so
2b97adf04000-2b97adfd r-xp  08:02 426171
  /opt/intel/composer_xe_2011_sp1.7.256/compiler/lib/intel64/libiomp5.so

[Wien] LAPW1 error

2012-06-25 Thread Jameson Maibam
Dear wien2k users and developers I have encountered several error message with 
wien2k11 using Intel Fortran composer 2011.
Calculation of scf of TiC gives the following message
LAPW0 END
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image  PCRoutineLineSource 
lapw1  00431C4D  hns_  364  hns_tmp_.F
lapw1  00411A73  calkpt_   171  
calkpt_tmp_.F
lapw1  004470D3  MAIN__ 61  lapw1_tmp_.F
lapw1  004088BC  Unknown   Unknown  Unknown
libc.so.6  0037B541ECDD  Unknown   Unknown  Unknown
lapw1  004087B9  Unknown   Unknown  Unknown

   stop error
I tried again. But this time scf was successful but unable to run x lapw1 -band 
of bandstructure in the task.
The following error message comes:
forrtl: severe (24): end-of-file during read, unit 5, file 
/home/james/TiC1/TiC1.in1c
Image  PCRoutineLineSource 
lapw1c 0059997A  Unknown   Unknown  Unknown
lapw1c 00598476  Unknown   Unknown  Unknown
lapw1c 004C7170  Unknown   Unknown  Unknown
lapw1c 0048378F  Unknown   Unknown  Unknown
lapw1c 00482C97  Unknown   Unknown  Unknown
lapw1c 004A2E81  Unknown   Unknown  Unknown
lapw1c 0044380F  inilpw_   340  inilpw.f
lapw1c 004465D3  MAIN__ 42  lapw1_tmp_.F
lapw1c 0040892C  Unknown   Unknown  Unknown
libc.so.6  0037B541ECDD  Unknown   Unknown  Unknown
lapw1c 00408829  Unknown   Unknown  Unknown
0.004u 0.012s 0:00.14 7.1%  0+0k 4264+16io 19pf+0w
error: command   /home/james/wien2k/lapw1c lapw1.def   failed

What might be the cause of this error.
please help

thanks in advance
Jameson Maibam
Assam University
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[Wien] LAPW1 crash on cycle 4

2012-06-02 Thread Marcelo Barbosa
I did a supercell of ZnO with 2x2x2 unit cells and then replaced one of the Zn 
with In (thus, 7 atoms of Zn, 8 of O and 1 of In).

The RMT values are:
Zn = 1.9.
O = 1.68
In = 1.79

I used :KPT = 12 and RKmax = 7.

The data is on the same computer. I only access it through ssh and then all the 
work is done there.

I only tried to run the scf-cycle using 4 parallel task (remembering that i was 
supposed to have 8 available), but i will try to do it with a non-parallel run 
and see how it goes.

Cheers,
Marcelo Barbosa

On May 30, 2012, at 6:22 AM, Peter Blaha wrote:

 You wrote that your cell contains just 16 atoms ?  Which atoms ?
 
 What are your RMT values ? What is your RKmax ? Do you have inversion 
 symmetry ?
 
 Usually 16 atom cells should not overload your computer, unless you do 
 something
 very stupid.
 
 I'm wondering why lapw0 took 37 seconds ? Seems too much for 16 atoms.
 
 Did you try to run the scf-cycle non-parallel ? Or with only 2 parallel tasks 
 ?
 
 Where are your data ? On the same computer or do you access the directory via 
 NFS ?
 
 
 Am 28.05.2012 16:55, schrieb Marcelo Barbosa:
 Thank you very much for your answer.
 
 I used htop to check the system while running and the swap (which says 
 having 2Gb available) only uses ~40Mb during the calculation. The memory 
 shows ~2Gb being used, so,
 is there any chance of being a swapping process going in  out of memory and 
 htop not showing it?
 
 I'm using mkl installed with the Intel compiler version 11.1. How can i 
 check if each lapw1 is trying to use 8 threads?
 I'm only using half of the available threads, so i thought i would be safe...
 
 Cheers,
 Marcelo Barbosa
 
 On May 14, 2012, at 2:19 PM, Laurence Marks wrote:
 
 I suspect that nobody will be able to be very specific, beyond the obvious 
 statement that you are overloading the computer. While you may only be 
 using 2Gb for the Wien2k
 jobs, the OS needs some so you may well be running out of memory. Did you 
 check the swap space useage, and look to see if the processes are swapping 
 in  out of memory?
 
 Also, if you are using mkl then each lapw1 task may be trying to use 8 
 threads. Depending upon how new the computer is hyperthreading may or may 
 not be effecient.
 
 I suggest looking in the system logs, they might have some information, and 
 use less tasks in parallel, e.g. 2. (And/or get more memory.)
 
 On Mon, May 14, 2012 at 6:46 AM, Marcelo Barbosa marcelo.b.barbosa at 
 gmail.com mailto:marcelo.b.barbosa at gmail.com wrote:
 
Hello to you all
 
I'm trying to run a structure made of 16 atoms using 100 k-points 
 (resulting in 12 k-points in the irreducible brillouin zone) on a machine 
 with 4 cores with
hyper-threaring, thus 8 threads available, and 4Gb of RAM.
 
I tried to run run_lapw -p -fc 1 -NI using a .machines file:
 
1:localhost
1:localhost
1:localhost
1:localhost
granularity:1
extrafine:1
 
accessing only four threads but at LAPW1 in the cycle 4 i get this on 
 the *.dayfile
 
 
cycle 4 (Fri May 11 20:13:21 WEST 2012) (37/96 to go)
 
 lapw0 -p (20:13:21) starting parallel lapw0 at Fri May 11 20:13:21 
 WEST 2012
 .machine0 : processors
running lapw0 in single mode
37.166u 0.361s 0:37.53 99.9% 0+0k 0+11944io 0pf+0w
:FORCE convergence: 0 1 0 XCO 3.91 YCO 23.9 YCO 2.38 YCO 47.7 ZCO 45.0 
 ZCO 24.7 YCO 24.7 ZCO 50.6 YCO 4.12 YCO 10.1 ZCO 30.2 ZCO 3.51 YCO 3.27 YCO 
 5.20 ZCO 8.33 ZCO
 lapw1 -c -p (20:14:00) starting parallel lapw1 at Fri May 11 20:14:00 
 WEST 2012
- starting parallel LAPW1 jobs at Fri May 11 20:14:00 WEST 2012
running LAPW1 in parallel mode (using .machines)
4 number_of_parallel_jobs
[1] 26970
[2] 27037
[3] 27103
[4] 27169
[1] Done ( ( $remote $machine[$p] cd $PWD;$t $exe ${def}_$loop.def 
 ;fixerror_lapw ${def}_$loop; rm -f .lock_$lockfile[$p] )  
 .stdout1_$loop; if ( -f
.stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop  .temp1_$loop; 
 grep \% .temp1_$loop  .time1_$loop; grep -v \% .temp1_$loop | perl -e 
 print stderr STDIN )
 
 
 
And the computer completely crashes and i have to reboot it.
 
Do you have any idea of what might be happening?
I thought it could be the lack of RAM, but until the end of the second 
 cycle i was monitoring it with htop and it never got to use more that 2Gb 
 of RAM, so i left it
thinking there would be no problem.
I used tmux to run this in the background, as i access the machine throw 
 ssh.
 
Cheers,
Marcelo Barbosa
 
 
 
 
___
Wien mailing list
Wien at zeus.theochem.tuwien.ac.at mailto:Wien at 
 zeus.theochem.tuwien.ac.at
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
 
 
 
 
 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu http://www.numis.northwestern.edu/ 
 1-847-491-3996
 Research is to see what 

[Wien] LAPW1 crash on cycle 4

2012-05-30 Thread Peter Blaha
You wrote that your cell contains just 16 atoms ?  Which atoms ?

What are your RMT values ? What is your RKmax ? Do you have inversion symmetry ?

Usually 16 atom cells should not overload your computer, unless you do something
very stupid.

I'm wondering why lapw0 took 37 seconds ? Seems too much for 16 atoms.

Did you try to run the scf-cycle non-parallel ? Or with only 2 parallel tasks ?

Where are your data ? On the same computer or do you access the directory via 
NFS ?


Am 28.05.2012 16:55, schrieb Marcelo Barbosa:
 Thank you very much for your answer.

 I used htop to check the system while running and the swap (which says having 
 2Gb available) only uses ~40Mb during the calculation. The memory shows ~2Gb 
 being used, so,
 is there any chance of being a swapping process going in  out of memory and 
 htop not showing it?

 I'm using mkl installed with the Intel compiler version 11.1. How can i check 
 if each lapw1 is trying to use 8 threads?
 I'm only using half of the available threads, so i thought i would be safe...

 Cheers,
 Marcelo Barbosa

 On May 14, 2012, at 2:19 PM, Laurence Marks wrote:

 I suspect that nobody will be able to be very specific, beyond the obvious 
 statement that you are overloading the computer. While you may only be using 
 2Gb for the Wien2k
 jobs, the OS needs some so you may well be running out of memory. Did you 
 check the swap space useage, and look to see if the processes are swapping 
 in  out of memory?

 Also, if you are using mkl then each lapw1 task may be trying to use 8 
 threads. Depending upon how new the computer is hyperthreading may or may 
 not be effecient.

 I suggest looking in the system logs, they might have some information, and 
 use less tasks in parallel, e.g. 2. (And/or get more memory.)

 On Mon, May 14, 2012 at 6:46 AM, Marcelo Barbosa marcelo.b.barbosa at 
 gmail.com mailto:marcelo.b.barbosa at gmail.com wrote:

 Hello to you all

 I'm trying to run a structure made of 16 atoms using 100 k-points 
 (resulting in 12 k-points in the irreducible brillouin zone) on a machine 
 with 4 cores with
 hyper-threaring, thus 8 threads available, and 4Gb of RAM.

 I tried to run run_lapw -p -fc 1 -NI using a .machines file:

 1:localhost
 1:localhost
 1:localhost
 1:localhost
 granularity:1
 extrafine:1

 accessing only four threads but at LAPW1 in the cycle 4 i get this on 
 the *.dayfile


 cycle 4 (Fri May 11 20:13:21 WEST 2012) (37/96 to go)

  lapw0 -p (20:13:21) starting parallel lapw0 at Fri May 11 20:13:21 
 WEST 2012
  .machine0 : processors
 running lapw0 in single mode
 37.166u 0.361s 0:37.53 99.9% 0+0k 0+11944io 0pf+0w
 :FORCE convergence: 0 1 0 XCO 3.91 YCO 23.9 YCO 2.38 YCO 47.7 ZCO 45.0 
 ZCO 24.7 YCO 24.7 ZCO 50.6 YCO 4.12 YCO 10.1 ZCO 30.2 ZCO 3.51 YCO 3.27 YCO 
 5.20 ZCO 8.33 ZCO
  lapw1 -c -p (20:14:00) starting parallel lapw1 at Fri May 11 20:14:00 
 WEST 2012
 - starting parallel LAPW1 jobs at Fri May 11 20:14:00 WEST 2012
 running LAPW1 in parallel mode (using .machines)
 4 number_of_parallel_jobs
 [1] 26970
 [2] 27037
 [3] 27103
 [4] 27169
 [1] Done ( ( $remote $machine[$p] cd $PWD;$t $exe ${def}_$loop.def 
 ;fixerror_lapw ${def}_$loop; rm -f .lock_$lockfile[$p] )  .stdout1_$loop; 
 if ( -f
 .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop  .temp1_$loop; 
 grep \% .temp1_$loop  .time1_$loop; grep -v \% .temp1_$loop | perl -e 
 print stderr STDIN )



 And the computer completely crashes and i have to reboot it.

 Do you have any idea of what might be happening?
 I thought it could be the lack of RAM, but until the end of the second 
 cycle i was monitoring it with htop and it never got to use more that 2Gb of 
 RAM, so i left it
 thinking there would be no problem.
 I used tmux to run this in the background, as i access the machine throw 
 ssh.

 Cheers,
 Marcelo Barbosa




 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at mailto:Wien at 
 zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu http://www.numis.northwestern.edu/ 
 1-847-491-3996
 Research is to see what everybody else has seen, and to think what nobody 
 else has thought
 Albert Szent-Gyorgi
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at mailto:Wien at 
 zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien



 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

-- 
-
Peter Blaha
Inst. Materials Chemistry, TU Vienna
Getreidemarkt 9, A-1060 Vienna, 

[Wien] LAPW1 crash on cycle 4

2012-05-29 Thread Peter Blaha
You wrote that your cell contains just 16 atoms ?  Which atoms ?

What are your RMT values ? What is your RKmax ? Do you have inversion symmetry ?

Usually 16 atom cells should not overload your computer, unless you do something
very stupid.

I'm wondering why lapw0 took 37 seconds ? Seems too much for 16 atoms.

Did you try to run it non-parallel ? Or with only 2 parallel tasks ?

Where are your data ? On the same computer or do you access the directory via 
NFS ?


Am 28.05.2012 16:55, schrieb Marcelo Barbosa:
 Thank you very much for your answer.

 I used htop to check the system while running and the swap (which says having 
 2Gb available) only uses ~40Mb during the calculation. The memory shows ~2Gb 
 being used, so,
 is there any chance of being a swapping process going in  out of memory and 
 htop not showing it?

 I'm using mkl installed with the Intel compiler version 11.1. How can i check 
 if each lapw1 is trying to use 8 threads?
 I'm only using half of the available threads, so i thought i would be safe...

 Cheers,
 Marcelo Barbosa

 On May 14, 2012, at 2:19 PM, Laurence Marks wrote:

 I suspect that nobody will be able to be very specific, beyond the obvious 
 statement that you are overloading the computer. While you may only be using 
 2Gb for the Wien2k
 jobs, the OS needs some so you may well be running out of memory. Did you 
 check the swap space useage, and look to see if the processes are swapping 
 in  out of memory?

 Also, if you are using mkl then each lapw1 task may be trying to use 8 
 threads. Depending upon how new the computer is hyperthreading may or may 
 not be effecient.

 I suggest looking in the system logs, they might have some information, and 
 use less tasks in parallel, e.g. 2. (And/or get more memory.)

 On Mon, May 14, 2012 at 6:46 AM, Marcelo Barbosa marcelo.b.barbosa at 
 gmail.com mailto:marcelo.b.barbosa at gmail.com wrote:

 Hello to you all

 I'm trying to run a structure made of 16 atoms using 100 k-points 
 (resulting in 12 k-points in the irreducible brillouin zone) on a machine 
 with 4 cores with
 hyper-threaring, thus 8 threads available, and 4Gb of RAM.

 I tried to run run_lapw -p -fc 1 -NI using a .machines file:

 1:localhost
 1:localhost
 1:localhost
 1:localhost
 granularity:1
 extrafine:1

 accessing only four threads but at LAPW1 in the cycle 4 i get this on 
 the *.dayfile


 cycle 4 (Fri May 11 20:13:21 WEST 2012) (37/96 to go)

  lapw0 -p (20:13:21) starting parallel lapw0 at Fri May 11 20:13:21 
 WEST 2012
  .machine0 : processors
 running lapw0 in single mode
 37.166u 0.361s 0:37.53 99.9% 0+0k 0+11944io 0pf+0w
 :FORCE convergence: 0 1 0 XCO 3.91 YCO 23.9 YCO 2.38 YCO 47.7 ZCO 45.0 
 ZCO 24.7 YCO 24.7 ZCO 50.6 YCO 4.12 YCO 10.1 ZCO 30.2 ZCO 3.51 YCO 3.27 YCO 
 5.20 ZCO 8.33 ZCO
  lapw1 -c -p (20:14:00) starting parallel lapw1 at Fri May 11 20:14:00 
 WEST 2012
 - starting parallel LAPW1 jobs at Fri May 11 20:14:00 WEST 2012
 running LAPW1 in parallel mode (using .machines)
 4 number_of_parallel_jobs
 [1] 26970
 [2] 27037
 [3] 27103
 [4] 27169
 [1] Done ( ( $remote $machine[$p] cd $PWD;$t $exe ${def}_$loop.def 
 ;fixerror_lapw ${def}_$loop; rm -f .lock_$lockfile[$p] )  .stdout1_$loop; 
 if ( -f
 .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop  .temp1_$loop; 
 grep \% .temp1_$loop  .time1_$loop; grep -v \% .temp1_$loop | perl -e 
 print stderr STDIN )



 And the computer completely crashes and i have to reboot it.

 Do you have any idea of what might be happening?
 I thought it could be the lack of RAM, but until the end of the second 
 cycle i was monitoring it with htop and it never got to use more that 2Gb of 
 RAM, so i left it
 thinking there would be no problem.
 I used tmux to run this in the background, as i access the machine throw 
 ssh.

 Cheers,
 Marcelo Barbosa




 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at mailto:Wien at 
 zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu http://www.numis.northwestern.edu/ 
 1-847-491-3996
 Research is to see what everybody else has seen, and to think what nobody 
 else has thought
 Albert Szent-Gyorgi
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at mailto:Wien at 
 zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien



 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

-- 
-
Peter Blaha
Inst. Materials Chemistry, TU Vienna
Getreidemarkt 9, A-1060 Vienna, Austria
Tel: 

[Wien] LAPW1 crash on cycle 4

2012-05-28 Thread Marcelo Barbosa
Thank you very much for your answer.

I used htop to check the system while running and the swap (which says having 
2Gb available) only uses ~40Mb during the calculation. The memory shows ~2Gb 
being used, so, is there any chance of being a swapping process going in  out 
of memory and htop not showing it?

I'm using mkl installed with the Intel compiler version 11.1. How can i check 
if each lapw1 is trying to use 8 threads?
I'm only using half of the available threads, so i thought i would be safe...

Cheers,
Marcelo Barbosa

On May 14, 2012, at 2:19 PM, Laurence Marks wrote:

 I suspect that nobody will be able to be very specific, beyond the obvious 
 statement that you are overloading the computer. While you may only be using 
 2Gb for the Wien2k jobs, the OS needs some so you may well be running out of 
 memory. Did you check the swap space useage, and look to see if the processes 
 are swapping in  out of memory?
 
 Also, if you are using mkl then each lapw1 task may be trying to use 8 
 threads. Depending upon how new the computer is hyperthreading may or may not 
 be effecient.
 
 I suggest looking in the system logs, they might have some information, and 
 use less tasks in parallel, e.g. 2. (And/or get more memory.)
 
 On Mon, May 14, 2012 at 6:46 AM, Marcelo Barbosa marcelo.b.barbosa at 
 gmail.com wrote:
 Hello to you all
 
 I'm trying to run a structure made of 16 atoms using 100 k-points (resulting 
 in 12 k-points in the irreducible brillouin zone) on a machine with 4 cores 
 with hyper-threaring, thus 8 threads available, and 4Gb of RAM.
 
 I tried to run run_lapw -p -fc 1 -NI using a .machines file:
 
 1:localhost
 1:localhost
 1:localhost
 1:localhost
 granularity:1
 extrafine:1
 
 accessing only four threads but at LAPW1 in the cycle 4 i get this on the 
 *.dayfile
 
 
cycle 4 (Fri May 11 20:13:21 WEST 2012) (37/96 to go)
 
lapw0 -p(20:13:21) starting parallel lapw0 at Fri May 11 20:13:21 
  WEST 2012
  .machine0 : processors
 running lapw0 in single mode
 37.166u 0.361s 0:37.53 99.9%0+0k 0+11944io 0pf+0w
 :FORCE convergence: 0 1 0 XCO 3.91 YCO 23.9 YCO 2.38 YCO 47.7 ZCO 45.0 ZCO 
 24.7 YCO 24.7 ZCO 50.6 YCO 4.12 YCO 10.1 ZCO 30.2 ZCO 3.51 YCO 3.27 YCO 5.20 
 ZCO 8.33 ZCO
lapw1  -c -p(20:14:00) starting parallel lapw1 at Fri May 11 
  20:14:00 WEST 2012
 -  starting parallel LAPW1 jobs at Fri May 11 20:14:00 WEST 2012
 running LAPW1 in parallel mode (using .machines)
 4 number_of_parallel_jobs
 [1] 26970
 [2] 27037
 [3] 27103
 [4] 27169
 [1]Done  ( ( $remote $machine[$p] cd $PWD;$t 
 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop; rm -f .lock_$lockfile[$p] 
 )  .stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw 
 .stdout1_$loop  .temp1_$loop; grep \% .temp1_$loop  .time1_$loop; grep -v 
 \% .temp1_$loop | perl -e print stderr STDIN )
 
 
 
 And the computer completely crashes and i have to reboot it.
 
 Do you have any idea of what might be happening?
 I thought it could be the lack of RAM, but until the end of the second cycle 
 i was monitoring it with htop and it never got to use more that 2Gb of RAM, 
 so i left it thinking there would be no problem.
 I used tmux to run this in the background, as i access the machine throw ssh.
 
 Cheers,
 Marcelo Barbosa
 
 
 
 
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
 
 
 
 -- 
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu 1-847-491-3996
 Research is to see what everybody else has seen, and to think what nobody 
 else has thought
 Albert Szent-Gyorgi
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

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[Wien] LAPW1 crash on cycle 4

2012-05-28 Thread Laurence Marks
At least with top you can look at the cpu column. If a process is
using ~100% of the cpu (with top, hopefully htop is similar) then it
is using 1 thread; one using 8 shows around 800%.

Do you have ganglia installed? If you do then that shows swap nicely,
and several other things. If not, try man -k swap, probably not
useful. A colleague swears by nmon which in principle can show you
everything useful,  but I've never used it. It might be the fastest
diagnostic, and probably easy to install. (If you use it and it is
useful let me and others know.)

N.B., I assume there was nothing useful in the system logs.

On Mon, May 28, 2012 at 9:55 AM, Marcelo Barbosa
marcelo.b.barbosa at gmail.com wrote:
 Thank you very much for your answer.

 I used htop to check the system while running and the swap (which says
 having 2Gb available) only uses ~40Mb during the calculation. The memory
 shows ~2Gb being used, so, is there any chance of being a swapping process
 going in  out of memory and htop not showing it?

 I'm using mkl installed with the Intel compiler version 11.1. How can i
 check if each lapw1 is trying to use 8 threads?
 I'm only using half of the available threads, so i thought i would be
 safe...

 Cheers,
 Marcelo Barbosa

 On May 14, 2012, at 2:19 PM, Laurence Marks wrote:

 I suspect that nobody will be able to be very specific, beyond the obvious
 statement that you are overloading the computer. While you may only be using
 2Gb for the Wien2k jobs, the OS needs some so you may well be running out of
 memory. Did you check the swap space useage, and look to see if the
 processes are swapping in  out of memory?

 Also, if you are using mkl then each lapw1 task may be trying to use 8
 threads. Depending upon how new the computer is hyperthreading may or may
 not be effecient.

 I suggest looking in the system logs, they might have some information, and
 use less tasks in parallel, e.g. 2. (And/or get more memory.)

 On Mon, May 14, 2012 at 6:46 AM, Marcelo Barbosa
 marcelo.b.barbosa at gmail.com wrote:

 Hello to you all

 I'm trying to run a structure made of 16 atoms using 100 k-points
 (resulting in 12 k-points in the irreducible brillouin zone) on a machine
 with 4 cores with hyper-threaring, thus 8 threads available, and 4Gb of RAM.

 I tried to run run_lapw -p -fc 1 -NI using a .machines file:

 1:localhost
 1:localhost
 1:localhost
 1:localhost
 granularity:1
 extrafine:1

 accessing only four threads but at LAPW1 in the cycle 4 i get this on the
 *.dayfile


 ? ?cycle 4 ? ? (Fri May 11 20:13:21 WEST 2012) ? ? ? ? (37/96 to go)

  ? lapw0 -p ? ?(20:13:21) starting parallel lapw0 at Fri May 11 20:13:21
  WEST 2012
  .machine0 : processors
 running lapw0 in single mode
 37.166u 0.361s 0:37.53 99.9% ? ?0+0k 0+11944io 0pf+0w
 :FORCE convergence: 0 1 0 XCO 3.91 YCO 23.9 YCO 2.38 YCO 47.7 ZCO 45.0 ZCO
 24.7 YCO 24.7 ZCO 50.6 YCO 4.12 YCO 10.1 ZCO 30.2 ZCO 3.51 YCO 3.27 YCO 5.20
 ZCO 8.33 ZCO
  ? lapw1 ?-c -p ? ? ? ?(20:14:00) starting parallel lapw1 at Fri May 11
  20:14:00 WEST 2012
 - ?starting parallel LAPW1 jobs at Fri May 11 20:14:00 WEST 2012
 running LAPW1 in parallel mode (using .machines)
 4 number_of_parallel_jobs
 [1] 26970
 [2] 27037
 [3] 27103
 [4] 27169
 [1] ? ?Done ? ? ? ? ? ? ? ? ? ? ? ? ?( ( $remote $machine[$p] cd $PWD;$t
 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop; rm -f
 .lock_$lockfile[$p] )  .stdout1_$loop; if ( -f .stdout1_$loop )
 bashtime2csh.pl_lapw .stdout1_$loop  .temp1_$loop; grep \% .temp1_$loop 
 .time1_$loop; grep -v \% .temp1_$loop | perl -e print stderr STDIN )



 And the computer completely crashes and i have to reboot it.

 Do you have any idea of what might be happening?
 I thought it could be the lack of RAM, but until the end of the second
 cycle i was monitoring it with htop and it never got to use more that 2Gb of
 RAM, so i left it thinking there would be no problem.
 I used tmux to run this in the background, as i access the machine throw
 ssh.

 Cheers,
 Marcelo Barbosa




 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu 1-847-491-3996
 Research is to see what everybody else has seen, and to think what nobody
 else has thought
 Albert Szent-Gyorgi
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien





-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu 1-847-491-3996
Research is to see what everybody else has seen, and to think what
nobody else has thought
Albert Szent-Gyorgi


[Wien] LAPW1 crash on cycle 4

2012-05-28 Thread Laurence Marks
N.B., you would have to install nmon, probably download from somewhere.

On Mon, May 28, 2012 at 11:23 AM, Laurence Marks
L-marks at northwestern.edu wrote:
 At least with top you can look at the cpu column. If a process is
 using ~100% of the cpu (with top, hopefully htop is similar) then it
 is using 1 thread; one using 8 shows around 800%.

 Do you have ganglia installed? If you do then that shows swap nicely,
 and several other things. If not, try man -k swap, probably not
 useful. A colleague swears by nmon which in principle can show you
 everything useful, ?but I've never used it. It might be the fastest
 diagnostic, and probably easy to install. (If you use it and it is
 useful let me and others know.)

 N.B., I assume there was nothing useful in the system logs.

 On Mon, May 28, 2012 at 9:55 AM, Marcelo Barbosa
 marcelo.b.barbosa at gmail.com wrote:
 Thank you very much for your answer.

 I used htop to check the system while running and the swap (which says
 having 2Gb available) only uses ~40Mb during the calculation. The memory
 shows ~2Gb being used, so, is there any chance of being a swapping process
 going in  out of memory and htop not showing it?

 I'm using mkl installed with the Intel compiler version 11.1. How can i
 check if each lapw1 is trying to use 8 threads?
 I'm only using half of the available threads, so i thought i would be
 safe...

 Cheers,
 Marcelo Barbosa

 On May 14, 2012, at 2:19 PM, Laurence Marks wrote:

 I suspect that nobody will be able to be very specific, beyond the obvious
 statement that you are overloading the computer. While you may only be using
 2Gb for the Wien2k jobs, the OS needs some so you may well be running out of
 memory. Did you check the swap space useage, and look to see if the
 processes are swapping in  out of memory?

 Also, if you are using mkl then each lapw1 task may be trying to use 8
 threads. Depending upon how new the computer is hyperthreading may or may
 not be effecient.

 I suggest looking in the system logs, they might have some information, and
 use less tasks in parallel, e.g. 2. (And/or get more memory.)

 On Mon, May 14, 2012 at 6:46 AM, Marcelo Barbosa
 marcelo.b.barbosa at gmail.com wrote:

 Hello to you all

 I'm trying to run a structure made of 16 atoms using 100 k-points
 (resulting in 12 k-points in the irreducible brillouin zone) on a machine
 with 4 cores with hyper-threaring, thus 8 threads available, and 4Gb of RAM.

 I tried to run run_lapw -p -fc 1 -NI using a .machines file:

 1:localhost
 1:localhost
 1:localhost
 1:localhost
 granularity:1
 extrafine:1

 accessing only four threads but at LAPW1 in the cycle 4 i get this on the
 *.dayfile


 ? ?cycle 4 ? ? (Fri May 11 20:13:21 WEST 2012) ? ? ? ? (37/96 to go)

  ? lapw0 -p ? ?(20:13:21) starting parallel lapw0 at Fri May 11 20:13:21
  WEST 2012
  .machine0 : processors
 running lapw0 in single mode
 37.166u 0.361s 0:37.53 99.9% ? ?0+0k 0+11944io 0pf+0w
 :FORCE convergence: 0 1 0 XCO 3.91 YCO 23.9 YCO 2.38 YCO 47.7 ZCO 45.0 ZCO
 24.7 YCO 24.7 ZCO 50.6 YCO 4.12 YCO 10.1 ZCO 30.2 ZCO 3.51 YCO 3.27 YCO 5.20
 ZCO 8.33 ZCO
  ? lapw1 ?-c -p ? ? ? ?(20:14:00) starting parallel lapw1 at Fri May 11
  20:14:00 WEST 2012
 - ?starting parallel LAPW1 jobs at Fri May 11 20:14:00 WEST 2012
 running LAPW1 in parallel mode (using .machines)
 4 number_of_parallel_jobs
 [1] 26970
 [2] 27037
 [3] 27103
 [4] 27169
 [1] ? ?Done ? ? ? ? ? ? ? ? ? ? ? ? ?( ( $remote $machine[$p] cd $PWD;$t
 $exe ${def}_$loop.def ;fixerror_lapw ${def}_$loop; rm -f
 .lock_$lockfile[$p] )  .stdout1_$loop; if ( -f .stdout1_$loop )
 bashtime2csh.pl_lapw .stdout1_$loop  .temp1_$loop; grep \% .temp1_$loop 
 .time1_$loop; grep -v \% .temp1_$loop | perl -e print stderr STDIN )



 And the computer completely crashes and i have to reboot it.

 Do you have any idea of what might be happening?
 I thought it could be the lack of RAM, but until the end of the second
 cycle i was monitoring it with htop and it never got to use more that 2Gb of
 RAM, so i left it thinking there would be no problem.
 I used tmux to run this in the background, as i access the machine throw
 ssh.

 Cheers,
 Marcelo Barbosa




 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu 1-847-491-3996
 Research is to see what everybody else has seen, and to think what nobody
 else has thought
 Albert Szent-Gyorgi
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien





 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu 1-847-491-3996
 Research is to see what everybody else has seen, and to think what
 nobody else 

[Wien] LAPW1 crash on cycle 4

2012-05-14 Thread Marcelo Barbosa
Hello to you all

I'm trying to run a structure made of 16 atoms using 100 k-points (resulting in 
12 k-points in the irreducible brillouin zone) on a machine with 4 cores with 
hyper-threaring, thus 8 threads available, and 4Gb of RAM.

I tried to run run_lapw -p -fc 1 -NI using a .machines file:

1:localhost
1:localhost
1:localhost
1:localhost
granularity:1
extrafine:1

accessing only four threads but at LAPW1 in the cycle 4 i get this on the 
*.dayfile


cycle 4 (Fri May 11 20:13:21 WEST 2012) (37/96 to go)

   lapw0 -p(20:13:21) starting parallel lapw0 at Fri May 11 20:13:21 WEST 
 2012
 .machine0 : processors
running lapw0 in single mode
37.166u 0.361s 0:37.53 99.9%0+0k 0+11944io 0pf+0w
:FORCE convergence: 0 1 0 XCO 3.91 YCO 23.9 YCO 2.38 YCO 47.7 ZCO 45.0 ZCO 24.7 
YCO 24.7 ZCO 50.6 YCO 4.12 YCO 10.1 ZCO 30.2 ZCO 3.51 YCO 3.27 YCO 5.20 ZCO 
8.33 ZCO
   lapw1  -c -p(20:14:00) starting parallel lapw1 at Fri May 11 
 20:14:00 WEST 2012
-  starting parallel LAPW1 jobs at Fri May 11 20:14:00 WEST 2012
running LAPW1 in parallel mode (using .machines)
4 number_of_parallel_jobs
[1] 26970
[2] 27037
[3] 27103
[4] 27169
[1]Done  ( ( $remote $machine[$p] cd $PWD;$t $exe 
${def}_$loop.def ;fixerror_lapw ${def}_$loop; rm -f .lock_$lockfile[$p] )  
.stdout1_$loop; if ( -f .stdout1_$loop ) bashtime2csh.pl_lapw .stdout1_$loop  
.temp1_$loop; grep \% .temp1_$loop  .time1_$loop; grep -v \% .temp1_$loop | 
perl -e print stderr STDIN )



And the computer completely crashes and i have to reboot it.

Do you have any idea of what might be happening?
I thought it could be the lack of RAM, but until the end of the second cycle i 
was monitoring it with htop and it never got to use more that 2Gb of RAM, so i 
left it thinking there would be no problem.
I used tmux to run this in the background, as i access the machine throw ssh.

Cheers,
Marcelo Barbosa






[Wien] lapw1 error in parallel mode

2012-05-04 Thread Peter Blaha
Check it out in $WIENROOT. It is present there.

Most likely, on your remote computer you do not have access (PATH) to the 
wien-root directory
or your $PATH variable is not set (ssh-daemon options)

Sometimes you can create in your .ssh directory a file called:  config
and put:

SendEnv *

into it.

Am 04.05.2012 08:37, schrieb Debojyoti Mukherjee:
 Dear WIEN2k users,

 I have successfully compiled the WIEN2k coed in parallel machine; but at the 
 time of running the code, I am getting an error message which is given below:


   LAPW0 END
   LAPW0 END
   LAPW0 END
   LAPW0 END
 bashtime2csh.pl_lapw: Command not found.
 bashtime2csh.pl_lapw: Command not found.
 bashtime2csh.pl_lapw: Command not found.
 bashtime2csh.pl_lapw: Command not found.
 bashtime2csh.pl_lapw: Command not found.

 bashtime2csh.pl_lapw: Command not found.


 It seems that inlapw1para_lapw  script, it is calling one command by the 
 name
 bashtime2csh.pl_lapw, which is not available with WIEN2K.


 Any help regarding this will be very much appreciated.



 Thanking you,



 Mr. Debojyoti Mukherjee

 --
 Scientific Officer - D,
 Applied Physics Division,
 Bhabha Atomic Research Center,
 Mumbai - 400085,
 India.




 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

-- 

   P.Blaha
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: blaha at theochem.tuwien.ac.atWWW: http://info.tuwien.ac.at/theochem/
--


[Wien] LAPW1 in cycle 2

2012-04-03 Thread Antonio Vanderlei dos Santos - Fisica
 

Dear users
I have serious problems in the calculation of alloy
2Sb3Te. Aguns problem seems resolved and the problem arose, in cycle 2


 stop error

lapw1 08048161 Unknown Unknown Unknown
lapw1 085AAAD0
Unknown Unknown Unknown
lapw1 080482A1 Unknown Unknown Unknown
lapw1
08066FDF MAIN__ 42 lapw1_tmp_.F
lapw1 08064A84 inilpw_ 370
inilpw.f
lapw1 0854396A Unknown Unknown Unknown
lapw1 08525F0B Unknown
Unknown Unknown
lapw1 085265EA Unknown Unknown Unknown
lapw1 0855C848
Unknown Unknown Unknown
lapw1 0859EE05 Unknown Unknown Unknown
lapw1
0859F88D Unknown Unknown Unknown
Image PC Routine Line Source 
forrtl:
severe (24): end-of-file during read, unit 5, file
/home/vandao/WIEN2k/vandao/joaoc/sb2te3/sb2te3.in1
Invalid null
command.
 LAPW0 END
Invalid null command.
hup: Command not found.
in
cycle 2 ETEST: 0 CTEST: 0
 MIXER END
Invalid null command.
 CORE
END
Invalid null command.
 CORE END
Invalid null command.
 LAPW2
END
Invalid null command.
 LAPW2 END
Invalid null command.
 LAPW1
END
Invalid null command.
 LAPW1 END
Invalid null command.
 LAPW0
END
Invalid null command.
hup: Command not found.

When the road
structure: 

sb2te3 

R LATTICE,NONEQUIV.ATOMS: 3 

MODE OF CALC=RELA
unit=ang 

7.558908 7.558908 53.781627 90.00 90.00 90.00


ATOM -1: X=0. Y=0. Z=0.3988 

MULT= 1 ISPLIT= 8


Sb NPT= 781 R0=0.1000 RMT= 2.5000 Z: 51.0 

LOCAL ROT MATRIX:
1.000 0.000 0.000 

0.000 1.000 0.000


0.000 0.000 1.000 

ATOM 2: X=0. Y=0.
Z=0.7872 

MULT= 1 ISPLIT= 8 

Te NPT= 781 R0=0.1000 RMT= 1.9500
Z: 52.0 

LOCAL ROT MATRIX: 0.000 0.000 0.000 

0.000
0.000 0.000 

0.000 0.000 0.000 

ATOM 3:
X=0. Y=0. Z=0. 

MULT= 1 ISPLIT= 0 

Te NPT= 781
R0=0.1000 RMT= 1.9500 Z: 52.0 

LOCAL ROT MATRIX: 0.000
0.000 0.000 

0.000 0.000 0.000 

0.000
0.000 0.000 

 
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[Wien] Lapw1

2012-03-02 Thread Laurence Marks
This is a standard problem, mentioned many times in the mailing list.
You probably used a cif file with atom positions of 0. 0.6667
0.67082 (for instance) which is too low in symmetry. You need to you 8
digits, e.g. 0. 0.6667 0.67082.

Your struct file will not initialize. Do not ignore errors during the
initialize, you need to pay attention to them.

With you current file do x patchsymm ; cp case.struct_new
case.struct and re-initialize.

On Fri, Mar 2, 2012 at 7:58 AM, ben amara imen imen.benamara5 at gmail.com 
wrote:
 Hello Dear Marks

 Thanks for your interest. Firstly, i want to tell you that I have chosen
 Rmt(Ga)=2 A??? and Rmt(S)=1.8 A? .There are no overlapping

 This is my case.struct file which you asked me :


 GaS
 H?? LATTICE,NONEQUIV.ATOMS:? 2 194
 P63/mmc
 MODE OF CALC=RELA
 unit=ang
 ? 6.787899? 6.787899 29.224626 90.00
 90.00120.00
 ATOM? -1: X=0. Y=0.6667 Z=0.67082000
 ? MULT=12? ISPLIT= 4
 ? -1: X=0. Y=0. Z=0.67082000
 ? -1: X=0.3334 Y=0.6667 Z=0.67082000
 ? -1: X=0.6667 Y=0. Z=0.17082000
 ? -1: X=0.6667 Y=0.3334 Z=0.17082000
 ? -1: X=0. Y=0. Z=0.17082000
 ? -1: X=0.6667 Y=0. Z=0.32918000
 ? -1: X=0. Y=0. Z=0.32918000
 ? -1: X=0.6667 Y=0.3334 Z=0.32918000
 ? -1: X=0. Y=0.6667 Z=0.82918000
 ? -1: X=0.3334 Y=0.6667 Z=0.82918000
 ? -1: X=0. Y=0. Z=0.82918000
 Ga1??? NPT=? 781? R0=0.5000 RMT=??? 2.1900?? Z:
 31.0
 LOCAL ROT MATRIX:??? 1.000 0.000 0.000
  0.000 1.000 0.000
  0.000 0.000 1.000
 ATOM? -2: X=0. Y=0.6667 Z=0.10191000
 ? MULT=12? ISPLIT= 4
 ? -2: X=0. Y=0. Z=0.10191000
 ? -2: X=0.3334 Y=0.6667 Z=0.10191000
 ? -2: X=0.6667 Y=0. Z=0.60191000
 ? -2: X=0.6667 Y=0.3334 Z=0.60191000
 ? -2: X=0. Y=0. Z=0.60191000
 ? -2: X=0.6667 Y=0. Z=0.89809000
 ? -2: X=0. Y=0. Z=0.89809000
 ? -2: X=0.6667 Y=0.3334 Z=0.89809000
 ? -2: X=0. Y=0.6667 Z=0.39809000
 ? -2: X=0.3334 Y=0.6667 Z=0.39809000
 ? -2: X=0. Y=0. Z=0.39809000
 S 1??? NPT=? 781? R0=0.0001 RMT=??? 2.1900?? Z:
 16.0
 LOCAL ROT MATRIX:??? 1.000 0.000 0.000
  0.000 1.000 0.000
  0.000 0.000 1.000
 ? 24? NUMBER OF SYMMETRY OPERATIONS
 ?1 0 0 0.
 ?0 1 0 0.
 ?0 0 1 0.
 ?? 1
 ?0-1 0 0.
 ?1-1 0 0.
 ?0 0 1 0.
 ?? 2
 -1 1 0 0.
 -1 0 0 0.
 ?0 0 1 0.
 ?? 3
 -1 0 0 0.
 ?0-1 0 0.
 ?0 0 1 0.5000
 ?? 4
 ?0 1 0 0.
 -1 1 0 0.
 ?0 0 1 0.5000
 ?? 5
 ?1-1 0 0.
 ?1 0 0 0.
 ?0 0 1 0.5000
 ?? 6
 ?0 1 0 0.
 ?1 0 0 0.
 ?0 0-1 0.
 ?? 7
 ?1-1 0 0.
 ?0-1 0 0.
 ?0 0-1 0.
 ?? 8
 -1 0 0 0.
 -1 1 0 0.
 ?0 0-1 0.
 ?? 9
 ?0-1 0 0.
 -1 0 0 0.
 ?0 0-1 0.5000
 ? 10
 -1 1 0 0.
 ?0 1 0 0.
 ?0 0-1 0.5000
 ? 11
 ?1 0 0 0.
 ?1-1 0 0.
 ?0 0-1 0.5000
 ? 12
 -1 0 0 0.
 ?0-1 0 0.
 ?0 0-1 0.
 ? 13
 ?0 1 0 0.
 -1 1 0 0.
 ?0 0-1 0.
 ? 14
 ?1-1 0 0.
 ?1 0 0 0.
 ?0 0-1 0.
 ? 15
 ?1 0 0 0.
 ?0 1 0 0.
 ?0 0-1 0.5000
 ? 16
 ?0-1 0 0.
 ?1-1 0 0.
 ?0 0-1 0.5000
 ? 17
 -1 1 0 0.
 -1 0 0 0.
 ?0 0-1 0.5000
 ? 18
 ?0-1 0 0.
 -1 0 0 0.
 ?0 0 1 0.
 ? 19
 -1 1 0 0.
 ?0 1 0 0.
 ?0 0 1 0.
 ? 20
 ?1 0 0 0.
 ?1-1 0 0.
 ?0 0 1 0.
 ? 21
 ?0 1 0 0.
 ?1 0 0 0.
 ?0 0 1 0.5000
 ? 22
 ?1-1 0 0.
 ?0-1 0 0.
 ?0 0 1 0.5000
 ? 23
 -1 0 0 0.
 -1 1 0 0.
 ?0 0 1 0.5000
 ? 24
 Can you help me?? Thanks in advance
 ?Regards !



-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu 1-847-491-3996
Research is to see what everybody else has seen, and to think what
nobody else has thought
Albert Szent-Gyorgi


[Wien] Lapw1

2012-02-29 Thread ben amara imen
Hello!

i'm trying to determine the electronic structure of my compound, but when I
run the  SCF, i get the following error:

Error in LAPW1
 'SELECT' - no energy limits found for L=
1
 'SELECT' - E-bottom -200.0   E-top -200.0

knowing that  the file* in1* is the following:

 WFFIL  EF= 0.5   (WFFIL, WFPRI, ENFIL, SUPWF)
  7.00   104 (R-MT*K-MAX; MAX L IN WF, V-NMT
  0.305  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global
APW/LAPW)
 10.30  0.000 CONT 0
 1   -6.87  0.001 STOP 0
 2   -1.09  0.002 CONT 0
 20.30  0.000 CONT 0
 00.30  0.000 CONT 0
  0.303  0  (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global
APW/LAPW)
 0   -1.02  0.002 CONT 0
 00.30  0.000 CONT 0
 10.30  0.000 CONT 0
K-VECTORS FROM UNIT:4  -11.0   2.5   302   emin/emax/nband #red



What can i do ?? Can you help me please and  thanks in advance
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[Wien] Lapw1

2012-02-29 Thread Laurence Marks
In most cases this is because you did the initialization wrong,
probably bad RMT values. Please attach your case.struct file.

2012/2/29 ben amara imen imen.benamara5 at gmail.com:



 Hello!

 i'm trying to determine the electronic structure of my compound, but when I
 run the? SCF, i get the following error:

 Error in LAPW1
 ?'SELECT' - no energy limits found for L=
 1
 ?'SELECT' - E-bottom -200.0?? E-top -200.0

 knowing that? the file in1 is the following:

 ?WFFIL? EF= 0.5?? (WFFIL, WFPRI, ENFIL, SUPWF)
 ? 7.00?? 10??? 4 (R-MT*K-MAX; MAX L IN WF, V-NMT
 ? 0.30??? 5? 0? (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global
 APW/LAPW)
 ?1??? 0.30? 0.000 CONT 0
 ?1?? -6.87? 0.001 STOP 0
 ?2?? -1.09? 0.002 CONT 0
 ?2??? 0.30? 0.000 CONT 0
 ?0??? 0.30? 0.000 CONT 0
 ? 0.30??? 3? 0? (GLOBAL E-PARAMETER WITH n OTHER CHOICES, global
 APW/LAPW)
 ?0?? -1.02? 0.002 CONT 0
 ?0??? 0.30? 0.000 CONT 0
 ?1??? 0.30? 0.000 CONT 0
 K-VECTORS FROM UNIT:4? -11.0?? 2.5?? 302?? emin/emax/nband #red



 What can i do ?? Can you help me please and? thanks in advance




 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu 1-847-491-3996
Research is to see what everybody else has seen, and to think what
nobody else has thought
Albert Szent-Gyorgi


[Wien] lapw1 -c error

2011-11-11 Thread Peter Blaha
It could be you are using a buggy (outdated WIEN2k) version.
At some time we had a bug in x_lapw, which would create
case.in1 from a case.in1c when inserting EF into that file.

Make sure that only case.in1c exists, and that the lapw2 step
does not create a case.in1.

Am 10.11.2011 21:49, schrieb vielmaj at onid.orst.edu:
 Hello,

 I maintain our Wien2k computer and a student sent me this error. I am unable 
 to pinpoint this error.

 Thanks for your help,

 Jason Vielma

 

 Quoting Robert Kykyneshi kykynesr at science.oregonstate.edu:
 Jason,

 There seems to be a problem still. For complex calculations
 (non-centrosymmetric structure), the -c is dropped for the second iteration
 and the calculation results in an error. Here are the .dayfile and .stdout.
 You will notice that for complex calc the .in1c is used for iteration 1,
 then for iteration 2 it is looking for .in1.

 Thanks,
 Robert

 cycle 1 (Sat Oct 29 12:09:15 PDT 2011) (40/99 to go)
 lapw0 (12:09:15) 8.1u 0.1s 0:08.32 99.6% 0+0k 0+16576io 0pf+0w
 lapw1 -c -up -orb (12:09:23) 4445.5u 16.2s 1:14:39.64 99.6%
 0+0k 8464+5799392io 38pf+0w
 lapw1 -c -dn -orb (13:24:03) 4453.1u 16.6s 1:14:47.78 99.6%
 0+0k 7840+5799360io 2pf+0w
 lapw2 -c -up (14:38:51) 424.9u 9.1s 7:34.09 95.5% 0+0k
 5717632+11664io 17pf+0w
 lapw2 -c -dn (14:46:25) 424.7u 9.0s 7:34.74 95.3% 0+0k
 5674272+11696io 10pf+0w
 lapwdm -up -c (14:54:00) 23.8u 1.2s 0:35.94 69.8% 0+0k
 3345128+72io 27pf+0w
 lapwdm -dn -c (14:54:36) 23.1u 0.9s 0:24.38 98.6% 0+0k 6192+72io
 11pf+0w
 lcore -up (14:55:01) 0.0u 0.0s 0:00.08 37.5% 0+0k 1912+664io 5pf+0w
 lcore -dn (14:55:01) 0.0u 0.0s 0:00.06 50.0% 0+0k 6136+664io 0pf+0w
 mixer (14:55:01) 0.3u 0.1s 0:00.62 87.0% 0+0k 8096+26128io 12pf+0w
 :ENERGY convergence: 0 0.0001 0 :CHARGE convergence: 0 0. 0

 cycle 2 (Sat Oct 29 14:55:02 PDT 2011) (39/98 to go)
 lapw0 (14:55:02) 7.9u 0.1s 0:08.24 98.7% 0+0k 3832+16592io 15pf+0w
 orb -up (14:55:10) 0.0u 0.0s 0:00.02 0.0% 0+0k 1792+32io 8pf+0w
 orb -dn (14:55:10) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+32io 0pf+0w
 lapw1 -up -orb (14:55:10) 0.0u 0.0s 0:00.15 0.0% 0+0k 2424+40io
 13pf+0w error: command /usr/local/WIEN/lapw1 uplapw1.def failed
 stop error
 Stdout:
 LAPW0 END
 Invalid null command.
 LAPW1 END
 Invalid null command.
 LAPW1 END
 Invalid null command.
 LAPW2 END
 Invalid null command.
 LAPW2 END
 Invalid null command.
 LAPWDM END
 Invalid null command.
 LAPWDM END
 Invalid null command.
 CORE END
 Invalid null command.
 CORE END
 Invalid null command.
 MIXER END
 in cycle 2 ETEST: 0 CTEST: 0
 hup: Command not found.
 Invalid null command.
 LAPW0 END
 Invalid null command.
 ORB END
 Invalid null command.
 ORB END
 Invalid null command.
 forrtl: severe (24): end-of-file during read, unit 5, file
 /home/krobert/WIEN2k/Cu3PS4/Cu3PS4.in1
 Image PC Routine Line Source

 lapw1 00E0DC76 Unknown Unknown Unknown
 lapw1 00E0CE76 Unknown Unknown Unknown
 lapw1 00DCBF2A Unknown Unknown Unknown
 lapw1 00D9420E Unknown Unknown Unknown
 lapw1 00D9381A Unknown Unknown Unknown
 lapw1 00DB271B Unknown Unknown Unknown
 lapw1 0044506C inilpw_ 363 inilpw.f
 lapw1 00447B97 MAIN__ 42
 lapw1_tmp_.F
 lapw1 0041178E Unknown Unknown Unknown
 libc.so.6 2B3C8846830D Unknown Unknown Unknown
 lapw1 004116A9 Unknown Unknown Unknown
 stop error
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

-- 
-
Peter Blaha
Inst. Materials Chemistry, TU Vienna
Getreidemarkt 9, A-1060 Vienna, Austria
Tel: +43-1-5880115671
Fax: +43-1-5880115698
email: pblaha at theochem.tuwien.ac.at
-


[Wien] lapw1 -c error

2011-11-10 Thread viel...@onid.orst.edu
Hello,

I maintain our Wien2k computer and a student sent me this error.  I am  
unable to pinpoint this error.

Thanks for your help,

Jason Vielma



Quoting Robert Kykyneshi kykynesr at science.oregonstate.edu:
Jason,

There seems to be a problem still. For complex calculations
(non-centrosymmetric structure), the -c is dropped for the second iteration
and the calculation results in an error. Here are the .dayfile and .stdout.
You will notice that for complex calc the .in1c is used for iteration 1,
then for iteration 2 it is looking for .in1.

Thanks,
Robert

cycle 1 (Sat Oct 29 12:09:15 PDT 2011) (40/99 to go)
lapw0 (12:09:15) 8.1u 0.1s 0:08.32 99.6% 0+0k 0+16576io 0pf+0w
lapw1  -c -up   -orb (12:09:23) 4445.5u 16.2s 1:14:39.64 99.6%
0+0k 8464+5799392io 38pf+0w
lapw1  -c -dn   -orb (13:24:03) 4453.1u 16.6s 1:14:47.78 99.6%
0+0k 7840+5799360io 2pf+0w
lapw2 -c -up(14:38:51) 424.9u 9.1s 7:34.09 95.5% 0+0k
5717632+11664io 17pf+0w
lapw2 -c -dn(14:46:25) 424.7u 9.0s 7:34.74 95.3% 0+0k
5674272+11696io 10pf+0w
lapwdm -up   -c(14:54:00) 23.8u 1.2s 0:35.94 69.8% 0+0k
3345128+72io 27pf+0w
lapwdm -dn  -c(14:54:36) 23.1u 0.9s 0:24.38 98.6% 0+0k 6192+72io
11pf+0w
lcore -up(14:55:01) 0.0u 0.0s 0:00.08 37.5% 0+0k 1912+664io 5pf+0w
lcore -dn(14:55:01) 0.0u 0.0s 0:00.06 50.0% 0+0k 6136+664io 0pf+0w
mixer (14:55:01) 0.3u 0.1s 0:00.62 87.0% 0+0k 8096+26128io 12pf+0w
:ENERGY convergence:  0 0.0001 0 :CHARGE convergence:  0 0. 0

cycle 2 (Sat Oct 29 14:55:02 PDT 2011) (39/98 to go)
lapw0 (14:55:02) 7.9u 0.1s 0:08.24 98.7% 0+0k 3832+16592io 15pf+0w
orb -up (14:55:10) 0.0u 0.0s 0:00.02 0.0% 0+0k 1792+32io 8pf+0w
orb -dn (14:55:10) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+32io 0pf+0w
lapw1  -up   -orb (14:55:10) 0.0u 0.0s 0:00.15 0.0% 0+0k 2424+40io
13pf+0w error: command   /usr/local/WIEN/lapw1 uplapw1.def   failed
stop error
Stdout:
LAPW0 END
Invalid null command.
LAPW1 END
Invalid null command.
LAPW1 END
Invalid null command.
LAPW2 END
Invalid null command.
LAPW2 END
Invalid null command.
LAPWDM END
Invalid null command.
LAPWDM END
Invalid null command.
CORE  END
Invalid null command.
CORE  END
Invalid null command.
MIXER END
in cycle 2ETEST: 0   CTEST: 0
hup: Command not found.
Invalid null command.
LAPW0 END
Invalid null command.
ORB   END
Invalid null command.
ORB   END
Invalid null command.
forrtl: severe (24): end-of-file during read, unit 5, file
/home/krobert/WIEN2k/Cu3PS4/Cu3PS4.in1
Image  PCRoutineLineSource

lapw1  00E0DC76  Unknown   Unknown  Unknown
lapw1  00E0CE76  Unknown   Unknown  Unknown
lapw1  00DCBF2A  Unknown   Unknown  Unknown
lapw1  00D9420E  Unknown   Unknown  Unknown
lapw1  00D9381A  Unknown   Unknown  Unknown
lapw1  00DB271B  Unknown   Unknown  Unknown
lapw1  0044506C  inilpw_   363  inilpw.f
lapw1  00447B97  MAIN__ 42
lapw1_tmp_.F
lapw1  0041178E  Unknown   Unknown  Unknown
libc.so.6  2B3C8846830D  Unknown   Unknown  Unknown
lapw1  004116A9  Unknown   Unknown  Unknown
stop error


[Wien] lapw1 -c error

2011-11-10 Thread Laurence Marks
This looks very strange. The scripts should pickup the complex option
(-c) if a non-zero case.in1c exists in the directory and then continue
with it. I would recreate the case and check that there is not
something strange in the input, maybe change to -xf in lapw1cpara.
If all else fails attach the struct file.

On Thu, Nov 10, 2011 at 2:49 PM,  vielmaj at onid.orst.edu wrote:
 Hello,

 I maintain our Wien2k computer and a student sent me this error. ?I am
 unable to pinpoint this error.

 Thanks for your help,

 Jason Vielma

 

 Quoting Robert Kykyneshi kykynesr at science.oregonstate.edu:
 Jason,

 There seems to be a problem still. For complex calculations
 (non-centrosymmetric structure), the -c is dropped for the second iteration
 and the calculation results in an error. Here are the .dayfile and .stdout.
 You will notice that for complex calc the .in1c is used for iteration 1,
 then for iteration 2 it is looking for .in1.

 Thanks,
 Robert

 cycle 1 ? ? ? ? (Sat Oct 29 12:09:15 PDT 2011) ? ? ? ? (40/99 to go)
 lapw0 ? ? ? ? (12:09:15) 8.1u 0.1s 0:08.32 99.6% 0+0k 0+16576io 0pf+0w
 lapw1 ?-c -up ? -orb ? ? ? ? (12:09:23) 4445.5u 16.2s 1:14:39.64 99.6%
 0+0k 8464+5799392io 38pf+0w
 lapw1 ?-c -dn ? -orb ? ? ? ? (13:24:03) 4453.1u 16.6s 1:14:47.78 99.6%
 0+0k 7840+5799360io 2pf+0w
 lapw2 -c -up ? ? ? ? ? ?(14:38:51) 424.9u 9.1s 7:34.09 95.5% 0+0k
 5717632+11664io 17pf+0w
 lapw2 -c -dn ? ? ? ? ? ?(14:46:25) 424.7u 9.0s 7:34.74 95.3% 0+0k
 5674272+11696io 10pf+0w
 lapwdm -up ? -c ? ? ? ?(14:54:00) 23.8u 1.2s 0:35.94 69.8% 0+0k
 3345128+72io 27pf+0w
 lapwdm -dn ?-c ? ? ? ?(14:54:36) 23.1u 0.9s 0:24.38 98.6% 0+0k 6192+72io
 11pf+0w
 lcore -up ? ? ? ?(14:55:01) 0.0u 0.0s 0:00.08 37.5% 0+0k 1912+664io 5pf+0w
 lcore -dn ? ? ? ?(14:55:01) 0.0u 0.0s 0:00.06 50.0% 0+0k 6136+664io 0pf+0w
 mixer ? ? ? ? (14:55:01) 0.3u 0.1s 0:00.62 87.0% 0+0k 8096+26128io 12pf+0w
 :ENERGY convergence: ?0 0.0001 0 :CHARGE convergence: ?0 0. 0

 ? cycle 2 ? ? ? ? (Sat Oct 29 14:55:02 PDT 2011) ? ? ? ? (39/98 to go)
 lapw0 ? ? ? ? (14:55:02) 7.9u 0.1s 0:08.24 98.7% 0+0k 3832+16592io 15pf+0w
 orb -up ? ? ? ? (14:55:10) 0.0u 0.0s 0:00.02 0.0% 0+0k 1792+32io 8pf+0w
 orb -dn ? ? ? ? (14:55:10) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+32io 0pf+0w
 lapw1 ?-up ? -orb ? ? ? ? (14:55:10) 0.0u 0.0s 0:00.15 0.0% 0+0k 2424+40io
 13pf+0w error: command ? /usr/local/WIEN/lapw1 uplapw1.def ? failed
 stop error
 Stdout:
 LAPW0 END
 Invalid null command.
 LAPW1 END
 Invalid null command.
 LAPW1 END
 Invalid null command.
 LAPW2 END
 Invalid null command.
 LAPW2 END
 Invalid null command.
 LAPWDM END
 Invalid null command.
 LAPWDM END
 Invalid null command.
 CORE ?END
 Invalid null command.
 CORE ?END
 Invalid null command.
 MIXER END
 in cycle 2 ? ?ETEST: 0 ? CTEST: 0
 hup: Command not found.
 Invalid null command.
 LAPW0 END
 Invalid null command.
 ORB ? END
 Invalid null command.
 ORB ? END
 Invalid null command.
 forrtl: severe (24): end-of-file during read, unit 5, file
 /home/krobert/WIEN2k/Cu3PS4/Cu3PS4.in1
 Image ? ? ? ? ? ? ?PC ? ? ? ? ? ? ? ?Routine ? ? ? ? ? ?Line ? ? ? ?Source

 lapw1 ? ? ? ? ? ? ?00E0DC76 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?00E0CE76 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?00DCBF2A ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?00D9420E ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?00D9381A ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?00DB271B ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?0044506C ?inilpw_ ? ? ? ? ? ? ? ? ? 363 ?inilpw.f
 lapw1 ? ? ? ? ? ? ?00447B97 ?MAIN__ ? ? ? ? ? ? ? ? ? ? 42
 lapw1_tmp_.F
 lapw1 ? ? ? ? ? ? ?0041178E ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 libc.so.6 ? ? ? ? ?2B3C8846830D ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?004116A9 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 stop error
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu 1-847-491-3996
Research is to see what everybody else has seen, and to think what
nobody else has thought
Albert Szent-Gyorgi


[Wien] lapw1 divide by zero error

2011-10-28 Thread Gerhard Fecher
I remember that some older Versions of the compiler needed explicitely the path 
to the vsml library for  -DINTEL_VML
for example:
LDFLAGS:-L/opt/intel/Compiler/11.0/083/lib/intel64 -lsvml -lguide -lpthread
(note that the path in the LDFLAGS is to the compiler not to the mkl libraries)
independent of ifort/mkl versions, this helped always.
The problem may be how ifort passes the commands to the linker, or the linker 
itself.

(Note the limitations by the pthread library of 32 bit versions of Linux that 
might cause segmentation faults when linked static)
in that case you may try something like:
-L/opt/intel/fc/lib -i-static -Bstatic -lguide -lsvml -Bdynamic -lpthread
-L/opt/intel/mkl/lib/32 -Bstatic -lmkl_lapack -lmkl_ia32 -lguide -Bdynamic 
-lpthread
to link only pthread dynamically.)

Ciao
Gerhard

DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
I think the problem, to be quite honest with you,
is that you have never actually known what the question is.


Dr. Gerhard H. Fecher
Institut of Inorganic and Analytical Chemistry
Johannes Gutenberg - University
55099 Mainz

Von: wien-bounces at zeus.theochem.tuwien.ac.at [wien-bounces at 
zeus.theochem.tuwien.ac.at]quot; im Auftrag von quot;Laurence Marks [L-marks 
at northwestern.edu]
Gesendet: Freitag, 28. Oktober 2011 01:39
Bis: A Mailing list for WIEN2k users
Betreff: Re: [Wien] lapw1 divide by zero error

I am pretty sure that you have now isolated the problem to the libsvml
that you are using. The quickest method (for you) is to remove it from
the options then recompile everything, I think there are a few other
(not many) codes that use the Intel vector library. It will make the
code slightly slower, but not overwhelmingly so.

Personally, I would want to determine the issue better. If you are
using dynamic linking then ldd $WIENROOT/lapw1 will tell you which
version of libsvml is being linked in. (If you are running on remote
nodes you need to ssh or whatever and check there as well.) You can
force dynamic linking by removing any -i-static (or similar)
compilation options. You should be using one which is somewhere in
the PATH for ifort, rather than an mkl version.

N.B., I don't know if you installed the ifort/mkl or someone else did.
It is not unusual to have incompatible combinations and many codes do
not care, but WIen2k is a good debugger of misconfigured systems. If
someone else installed the compilers you may want to talk to them
about updating.

On Thu, Oct 27, 2011 at 6:27 PM,  vielmaj at onid.orst.edu wrote:
 I tried removing the -DINTEL_VML and it now the scf cycle works just fine.
  Should I leave it like this, or should I re-compile the whole thing without
 -DINTEL_VML.  Or should I do something different.

 Thanks,

 Jason

 Quoting Laurence Marks L-marks at northwestern.edu:

 The changes you made should not matter, since you changed the
 complex version and TiC (and line 384) are for the real version. Two
 thoughts:

 a) Download a clean version of SRC_lapw1 from the website, unzip/untar
 it and do a sdiff of hamilt.F to ensure that you have changed nothing
 else by mistake.

 b) Remove -DINTEL_VML from your compilation options (just for lapw1)
 and recompile then test. If this works then you have a bad libsvml
 and/or incompatible versions/ifort or similar. You might be picking up
 the version from mkl rather than ifort, check the order in the linking
 or how you are setting up, e.g. via sourcing the sh/csh compiler
 scripts.

 If neither of these helps, I would suspect something wrong in your
 input files -- try one of the other examples.

 N.B., I assume that you have turned on some debug options for initial
 testing, which is wise but you will want to remove them later.

 On Thu, Oct 27, 2011 at 5:34 PM,  vielmaj at onid.orst.edu wrote:

 Hello,

 I am getting a divide by zero error in the lapw1 routines.

 I compiled with the ifort 10 and mkl 9 compilers.  To compile completely
 with no errors, I had to make the following changes n SRC_lapw1/hamilt.F
 program below for me using an older compiler.

 ! in case of older mk/vml you may miss vzcis (IPO Error: unresolved :
 vzcis_)
 ! Either upgrade the libraries (ifort+mkl) or:
 ! Comment the line below and uncomment the other ones.
 ! Uncomment also all other lines above where   help_tmpcos occurs

 !!_COMPLEX call vzcis(j_end(ihelp),help1,help_exp)
 !_COMPLEX call vdcos(j_end(ihelp),help1,help_tmpcos)
 !_COMPLEX call vdsin(j_end(ihelp),help1,help_tmpsin)
 !_COMPLEX do j = 1, j_end(ihelp)
 !_COMPLEXhelp_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
 !_COMPLEX end do

 #these three lines below are also in hamilt.F that were uncommented
 !_COMPLEX  deallocate( help_tmpcos, help_tmpsin )
 !_COMPLEX  DOUBLE PRECISION, allocatable ::   help_tmpsin(:),
 help_tmpcos(:)
 !_COMPLEX  allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )

 Once I

[Wien] lapw1 divide by zero error

2011-10-28 Thread viel...@onid.orst.edu
I did try to force the ifort svml library and the same error remains.   
The installation is exactly like I did a year ago and it worked.  The  
only difference is this installation is on the new Ubuntu 11.10 and  
the old one was on Debian Squeeze.  I decided to leave out the svml  
library, since everyone who uses it is only looking for bandstructures  
and DOS for simple systems.

Thanks,

Jason

Quoting Gerhard Fecher fecher at uni-mainz.de:

 I remember that some older Versions of the compiler needed  
 explicitely the path to the vsml library for  -DINTEL_VML
 for example:
 LDFLAGS:-L/opt/intel/Compiler/11.0/083/lib/intel64 -lsvml -lguide -lpthread
 (note that the path in the LDFLAGS is to the compiler not to the mkl  
 libraries)
 independent of ifort/mkl versions, this helped always.
 The problem may be how ifort passes the commands to the linker, or  
 the linker itself.

 (Note the limitations by the pthread library of 32 bit versions of  
 Linux that might cause segmentation faults when linked static)
 in that case you may try something like:
 -L/opt/intel/fc/lib -i-static -Bstatic -lguide -lsvml -Bdynamic -lpthread
 -L/opt/intel/mkl/lib/32 -Bstatic -lmkl_lapack -lmkl_ia32 -lguide  
 -Bdynamic -lpthread
 to link only pthread dynamically.)

 Ciao
 Gerhard

 DEEP THOUGHT in D. Adams; Hitchhikers Guide to the Galaxy:
 I think the problem, to be quite honest with you,
 is that you have never actually known what the question is.

 
 Dr. Gerhard H. Fecher
 Institut of Inorganic and Analytical Chemistry
 Johannes Gutenberg - University
 55099 Mainz
 
 Von: wien-bounces at zeus.theochem.tuwien.ac.at  
 [wien-bounces at zeus.theochem.tuwien.ac.at]quot; im Auftrag von  
 quot;Laurence Marks [L-marks at northwestern.edu]
 Gesendet: Freitag, 28. Oktober 2011 01:39
 Bis: A Mailing list for WIEN2k users
 Betreff: Re: [Wien] lapw1 divide by zero error

 I am pretty sure that you have now isolated the problem to the libsvml
 that you are using. The quickest method (for you) is to remove it from
 the options then recompile everything, I think there are a few other
 (not many) codes that use the Intel vector library. It will make the
 code slightly slower, but not overwhelmingly so.

 Personally, I would want to determine the issue better. If you are
 using dynamic linking then ldd $WIENROOT/lapw1 will tell you which
 version of libsvml is being linked in. (If you are running on remote
 nodes you need to ssh or whatever and check there as well.) You can
 force dynamic linking by removing any -i-static (or similar)
 compilation options. You should be using one which is somewhere in
 the PATH for ifort, rather than an mkl version.

 N.B., I don't know if you installed the ifort/mkl or someone else did.
 It is not unusual to have incompatible combinations and many codes do
 not care, but WIen2k is a good debugger of misconfigured systems. If
 someone else installed the compilers you may want to talk to them
 about updating.

 On Thu, Oct 27, 2011 at 6:27 PM,  vielmaj at onid.orst.edu wrote:
 I tried removing the -DINTEL_VML and it now the scf cycle works just fine.
  Should I leave it like this, or should I re-compile the whole thing without
 -DINTEL_VML.  Or should I do something different.

 Thanks,

 Jason

 Quoting Laurence Marks L-marks at northwestern.edu:

 The changes you made should not matter, since you changed the
 complex version and TiC (and line 384) are for the real version. Two
 thoughts:

 a) Download a clean version of SRC_lapw1 from the website, unzip/untar
 it and do a sdiff of hamilt.F to ensure that you have changed nothing
 else by mistake.

 b) Remove -DINTEL_VML from your compilation options (just for lapw1)
 and recompile then test. If this works then you have a bad libsvml
 and/or incompatible versions/ifort or similar. You might be picking up
 the version from mkl rather than ifort, check the order in the linking
 or how you are setting up, e.g. via sourcing the sh/csh compiler
 scripts.

 If neither of these helps, I would suspect something wrong in your
 input files -- try one of the other examples.

 N.B., I assume that you have turned on some debug options for initial
 testing, which is wise but you will want to remove them later.

 On Thu, Oct 27, 2011 at 5:34 PM,  vielmaj at onid.orst.edu wrote:

 Hello,

 I am getting a divide by zero error in the lapw1 routines.

 I compiled with the ifort 10 and mkl 9 compilers.  To compile completely
 with no errors, I had to make the following changes n SRC_lapw1/hamilt.F
 program below for me using an older compiler.

 ! in case of older mk/vml you may miss vzcis (IPO Error: unresolved :
 vzcis_)
 ! Either upgrade the libraries (ifort+mkl) or:
 ! Comment the line below and uncomment the other ones.
 ! Uncomment also all other lines above where   help_tmpcos occurs

 !!_COMPLEX call vzcis(j_end(ihelp),help1,help_exp)
 !_COMPLEX call vdcos(j_end(ihelp

[Wien] lapw1 divide by zero error

2011-10-27 Thread viel...@onid.orst.edu
Hello,

I am getting a divide by zero error in the lapw1 routines.

I compiled with the ifort 10 and mkl 9 compilers.  To compile  
completely with no errors, I had to make the following changes n  
SRC_lapw1/hamilt.F program below for me using an older compiler.

! in case of older mk/vml you may miss vzcis (IPO Error: unresolved : vzcis_)
! Either upgrade the libraries (ifort+mkl) or:
! Comment the line below and uncomment the other ones.
! Uncomment also all other lines above where   help_tmpcos occurs

!!_COMPLEX call vzcis(j_end(ihelp),help1,help_exp)
!_COMPLEX call vdcos(j_end(ihelp),help1,help_tmpcos)
!_COMPLEX call vdsin(j_end(ihelp),help1,help_tmpsin)
!_COMPLEX do j = 1, j_end(ihelp)
!_COMPLEXhelp_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
!_COMPLEX end do

#these three lines below are also in hamilt.F that were uncommented
!_COMPLEX  deallocate( help_tmpcos, help_tmpsin )
!_COMPLEX  DOUBLE PRECISION, allocatable ::   help_tmpsin(:),  
help_tmpcos(:)
!_COMPLEX  allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )

Once I run the TiC example, I get this error.

hup: Command not found.
Invalid null command.
  LAPW0 END
Invalid null command.
forrtl: severe (71): integer divide by zero
Image  PCRoutineLineSource
lapw1  0049B8F2  Unknown   Unknown  Unknown
lapw1  0049BAF0  Unknown   Unknown  Unknown
lapw1  004932D4  Unknown   Unknown  Unknown
lapw1  0042D547  hamilt_   384   
hamilt_tmp_.F
lapw1  0041CC99  calkpt_   156   
calkpt_tmp_.F
lapw1  0044A312  MAIN__ 61   
lapw1_tmp_.F
lapw1  00413B4E  Unknown   Unknown  Unknown
libc.so.6  2B735713A30D  Unknown   Unknown  Unknown
lapw1  00413A69  Unknown   Unknown  Unknown

   stop error


It links to the following line in the hamilt.F program.

!_REALcall vdcos(j_end(ihelp),help1,help_cos)

Thanks for you help,

Jason Vielma


[Wien] lapw1 divide by zero error

2011-10-27 Thread Laurence Marks
The changes you made should not matter, since you changed the
complex version and TiC (and line 384) are for the real version. Two
thoughts:

a) Download a clean version of SRC_lapw1 from the website, unzip/untar
it and do a sdiff of hamilt.F to ensure that you have changed nothing
else by mistake.

b) Remove -DINTEL_VML from your compilation options (just for lapw1)
and recompile then test. If this works then you have a bad libsvml
and/or incompatible versions/ifort or similar. You might be picking up
the version from mkl rather than ifort, check the order in the linking
or how you are setting up, e.g. via sourcing the sh/csh compiler
scripts.

If neither of these helps, I would suspect something wrong in your
input files -- try one of the other examples.

N.B., I assume that you have turned on some debug options for initial
testing, which is wise but you will want to remove them later.

On Thu, Oct 27, 2011 at 5:34 PM,  vielmaj at onid.orst.edu wrote:
 Hello,

 I am getting a divide by zero error in the lapw1 routines.

 I compiled with the ifort 10 and mkl 9 compilers. ?To compile completely
 with no errors, I had to make the following changes n SRC_lapw1/hamilt.F
 program below for me using an older compiler.

 ! in case of older mk/vml you may miss vzcis (IPO Error: unresolved :
 vzcis_)
 ! Either upgrade the libraries (ifort+mkl) or:
 ! Comment the line below and uncomment the other ones.
 ! Uncomment also all other lines above where ? help_tmpcos occurs

 !!_COMPLEX ? ? ? ? call vzcis(j_end(ihelp),help1,help_exp)
 !_COMPLEX ? ? ? ? call vdcos(j_end(ihelp),help1,help_tmpcos)
 !_COMPLEX ? ? ? ? call vdsin(j_end(ihelp),help1,help_tmpsin)
 !_COMPLEX ? ? ? ? do j = 1, j_end(ihelp)
 !_COMPLEX ? ? ? ? ? ?help_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
 !_COMPLEX ? ? ? ? end do

 #these three lines below are also in hamilt.F that were uncommented
 !_COMPLEX ? ? ?deallocate( help_tmpcos, help_tmpsin )
 !_COMPLEX ? ? ?DOUBLE PRECISION, allocatable :: ? help_tmpsin(:),
 help_tmpcos(:)
 !_COMPLEX ? ? ?allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )

 Once I run the TiC example, I get this error.

 hup: Command not found.
 Invalid null command.
 ?LAPW0 END
 Invalid null command.
 forrtl: severe (71): integer divide by zero
 Image ? ? ? ? ? ? ?PC ? ? ? ? ? ? ? ?Routine ? ? ? ? ? ?Line ? ? ? ?Source
 lapw1 ? ? ? ? ? ? ?0049B8F2 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?0049BAF0 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?004932D4 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?0042D547 ?hamilt_ ? ? ? ? ? ? ? ? ? 384
 ?hamilt_tmp_.F
 lapw1 ? ? ? ? ? ? ?0041CC99 ?calkpt_ ? ? ? ? ? ? ? ? ? 156
 ?calkpt_tmp_.F
 lapw1 ? ? ? ? ? ? ?0044A312 ?MAIN__ ? ? ? ? ? ? ? ? ? ? 61
 ?lapw1_tmp_.F
 lapw1 ? ? ? ? ? ? ?00413B4E ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 libc.so.6 ? ? ? ? ?2B735713A30D ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?00413A69 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown

 ?stop error


 It links to the following line in the hamilt.F program.

 !_REAL ? ? ? ? ? ?call vdcos(j_end(ihelp),help1,help_cos)

 Thanks for you help,

 Jason Vielma
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




-- 
Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
Research is to see what everybody else has seen, and to think what
nobody else has thought
Albert Szent-Gyorgi


[Wien] lapw1 divide by zero error

2011-10-27 Thread viel...@onid.orst.edu
I tried removing the -DINTEL_VML and it now the scf cycle works just  
fine.  Should I leave it like this, or should I re-compile the whole  
thing without -DINTEL_VML.  Or should I do something different.

Thanks,

Jason

Quoting Laurence Marks L-marks at northwestern.edu:

 The changes you made should not matter, since you changed the
 complex version and TiC (and line 384) are for the real version. Two
 thoughts:

 a) Download a clean version of SRC_lapw1 from the website, unzip/untar
 it and do a sdiff of hamilt.F to ensure that you have changed nothing
 else by mistake.

 b) Remove -DINTEL_VML from your compilation options (just for lapw1)
 and recompile then test. If this works then you have a bad libsvml
 and/or incompatible versions/ifort or similar. You might be picking up
 the version from mkl rather than ifort, check the order in the linking
 or how you are setting up, e.g. via sourcing the sh/csh compiler
 scripts.

 If neither of these helps, I would suspect something wrong in your
 input files -- try one of the other examples.

 N.B., I assume that you have turned on some debug options for initial
 testing, which is wise but you will want to remove them later.

 On Thu, Oct 27, 2011 at 5:34 PM,  vielmaj at onid.orst.edu wrote:
 Hello,

 I am getting a divide by zero error in the lapw1 routines.

 I compiled with the ifort 10 and mkl 9 compilers. ?To compile completely
 with no errors, I had to make the following changes n SRC_lapw1/hamilt.F
 program below for me using an older compiler.

 ! in case of older mk/vml you may miss vzcis (IPO Error: unresolved :
 vzcis_)
 ! Either upgrade the libraries (ifort+mkl) or:
 ! Comment the line below and uncomment the other ones.
 ! Uncomment also all other lines above where ? help_tmpcos occurs

 !!_COMPLEX ? ? ? ? call vzcis(j_end(ihelp),help1,help_exp)
 !_COMPLEX ? ? ? ? call vdcos(j_end(ihelp),help1,help_tmpcos)
 !_COMPLEX ? ? ? ? call vdsin(j_end(ihelp),help1,help_tmpsin)
 !_COMPLEX ? ? ? ? do j = 1, j_end(ihelp)
 !_COMPLEX ? ? ? ? ? ?help_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
 !_COMPLEX ? ? ? ? end do

 #these three lines below are also in hamilt.F that were uncommented
 !_COMPLEX ? ? ?deallocate( help_tmpcos, help_tmpsin )
 !_COMPLEX ? ? ?DOUBLE PRECISION, allocatable :: ? help_tmpsin(:),
 help_tmpcos(:)
 !_COMPLEX ? ? ?allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )

 Once I run the TiC example, I get this error.

 hup: Command not found.
 Invalid null command.
 ?LAPW0 END
 Invalid null command.
 forrtl: severe (71): integer divide by zero
 Image ? ? ? ? ? ? ?PC ? ? ? ? ? ? ? ?Routine ? ? ? ? ? ?Line ? ? ? ?Source
 lapw1 ? ? ? ? ? ? ?0049B8F2 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?0049BAF0 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?004932D4 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?0042D547 ?hamilt_ ? ? ? ? ? ? ? ? ? 384
 ?hamilt_tmp_.F
 lapw1 ? ? ? ? ? ? ?0041CC99 ?calkpt_ ? ? ? ? ? ? ? ? ? 156
 ?calkpt_tmp_.F
 lapw1 ? ? ? ? ? ? ?0044A312 ?MAIN__ ? ? ? ? ? ? ? ? ? ? 61
 ?lapw1_tmp_.F
 lapw1 ? ? ? ? ? ? ?00413B4E ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 libc.so.6 ? ? ? ? ?2B735713A30D ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown
 lapw1 ? ? ? ? ? ? ?00413A69 ?Unknown ? ? ? ? ? ? ? Unknown ?Unknown

 ?stop error


 It links to the following line in the hamilt.F program.

 !_REAL ? ? ? ? ? ?call vdcos(j_end(ihelp),help1,help_cos)

 Thanks for you help,

 Jason Vielma
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




 --
 Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu
 Research is to see what everybody else has seen, and to think what
 nobody else has thought
 Albert Szent-Gyorgi
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




[Wien] lapw1 divide by zero error

2011-10-27 Thread Laurence Marks
I am pretty sure that you have now isolated the problem to the libsvml
that you are using. The quickest method (for you) is to remove it from
the options then recompile everything, I think there are a few other
(not many) codes that use the Intel vector library. It will make the
code slightly slower, but not overwhelmingly so.

Personally, I would want to determine the issue better. If you are
using dynamic linking then ldd $WIENROOT/lapw1 will tell you which
version of libsvml is being linked in. (If you are running on remote
nodes you need to ssh or whatever and check there as well.) You can
force dynamic linking by removing any -i-static (or similar)
compilation options. You should be using one which is somewhere in
the PATH for ifort, rather than an mkl version.

N.B., I don't know if you installed the ifort/mkl or someone else did.
It is not unusual to have incompatible combinations and many codes do
not care, but WIen2k is a good debugger of misconfigured systems. If
someone else installed the compilers you may want to talk to them
about updating.

On Thu, Oct 27, 2011 at 6:27 PM,  vielmaj at onid.orst.edu wrote:
 I tried removing the -DINTEL_VML and it now the scf cycle works just fine.
 ?Should I leave it like this, or should I re-compile the whole thing without
 -DINTEL_VML. ?Or should I do something different.

 Thanks,

 Jason

 Quoting Laurence Marks L-marks at northwestern.edu:

 The changes you made should not matter, since you changed the
 complex version and TiC (and line 384) are for the real version. Two
 thoughts:

 a) Download a clean version of SRC_lapw1 from the website, unzip/untar
 it and do a sdiff of hamilt.F to ensure that you have changed nothing
 else by mistake.

 b) Remove -DINTEL_VML from your compilation options (just for lapw1)
 and recompile then test. If this works then you have a bad libsvml
 and/or incompatible versions/ifort or similar. You might be picking up
 the version from mkl rather than ifort, check the order in the linking
 or how you are setting up, e.g. via sourcing the sh/csh compiler
 scripts.

 If neither of these helps, I would suspect something wrong in your
 input files -- try one of the other examples.

 N.B., I assume that you have turned on some debug options for initial
 testing, which is wise but you will want to remove them later.

 On Thu, Oct 27, 2011 at 5:34 PM, ?vielmaj at onid.orst.edu wrote:

 Hello,

 I am getting a divide by zero error in the lapw1 routines.

 I compiled with the ifort 10 and mkl 9 compilers. ?To compile completely
 with no errors, I had to make the following changes n SRC_lapw1/hamilt.F
 program below for me using an older compiler.

 ! in case of older mk/vml you may miss vzcis (IPO Error: unresolved :
 vzcis_)
 ! Either upgrade the libraries (ifort+mkl) or:
 ! Comment the line below and uncomment the other ones.
 ! Uncomment also all other lines above where ? help_tmpcos occurs

 !!_COMPLEX ? ? ? ? call vzcis(j_end(ihelp),help1,help_exp)
 !_COMPLEX ? ? ? ? call vdcos(j_end(ihelp),help1,help_tmpcos)
 !_COMPLEX ? ? ? ? call vdsin(j_end(ihelp),help1,help_tmpsin)
 !_COMPLEX ? ? ? ? do j = 1, j_end(ihelp)
 !_COMPLEX ? ? ? ? ? ?help_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
 !_COMPLEX ? ? ? ? end do

 #these three lines below are also in hamilt.F that were uncommented
 !_COMPLEX ? ? ?deallocate( help_tmpcos, help_tmpsin )
 !_COMPLEX ? ? ?DOUBLE PRECISION, allocatable :: ? help_tmpsin(:),
 help_tmpcos(:)
 !_COMPLEX ? ? ?allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )

 Once I run the TiC example, I get this error.

 hup: Command not found.
 Invalid null command.
 ?LAPW0 END
 Invalid null command.
 forrtl: severe (71): integer divide by zero
 Image ? ? ? ? ? ? ?PC ? ? ? ? ? ? ? ?Routine ? ? ? ? ? ?Line
 ?Source
 lapw1 ? ? ? ? ? ? ?0049B8F2 ?Unknown ? ? ? ? ? ? ? Unknown
 ?Unknown
 lapw1 ? ? ? ? ? ? ?0049BAF0 ?Unknown ? ? ? ? ? ? ? Unknown
 ?Unknown
 lapw1 ? ? ? ? ? ? ?004932D4 ?Unknown ? ? ? ? ? ? ? Unknown
 ?Unknown
 lapw1 ? ? ? ? ? ? ?0042D547 ?hamilt_ ? ? ? ? ? ? ? ? ? 384
 ?hamilt_tmp_.F
 lapw1 ? ? ? ? ? ? ?0041CC99 ?calkpt_ ? ? ? ? ? ? ? ? ? 156
 ?calkpt_tmp_.F
 lapw1 ? ? ? ? ? ? ?0044A312 ?MAIN__ ? ? ? ? ? ? ? ? ? ? 61
 ?lapw1_tmp_.F
 lapw1 ? ? ? ? ? ? ?00413B4E ?Unknown ? ? ? ? ? ? ? Unknown
 ?Unknown
 libc.so.6 ? ? ? ? ?2B735713A30D ?Unknown ? ? ? ? ? ? ? Unknown
 ?Unknown
 lapw1 ? ? ? ? ? ? ?00413A69 ?Unknown ? ? ? ? ? ? ? Unknown
 ?Unknown

 ?stop error


 It links to the following line in the hamilt.F program.

 !_REAL ? ? ? ? ? ?call vdcos(j_end(ihelp),help1,help_cos)

 Thanks for you help,

 Jason Vielma
 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien




 --
 Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu
 Research is to see what everybody else has seen, 

[Wien] lapw1 problem with PbTiO3

2011-05-12 Thread viel...@onid.orst.edu
I have been able to many other simulations.  The Wien2k I downloaded  
was the most recent version as of January this year.  Has then been  
any upgrades since then?

Jason

Quoting Peter Blaha pblaha at theochem.tuwien.ac.at:

 Have you been able to run any other example successfully ?

 The problem is most likely not in the compilation, but in the x_lapw script,
 as case.in1 is modified after the first lapw2 call (thus you can run  
 the first scf iteration, but
 at the lapw2 step case.in1 gets cut and the second scf cycle fails)

 You may have downloaded a buggy version, and similar problems were  
 later on discussed (and fixed)
 on the mailing list.

 I suggest to upgrade.

 Am 11.05.2011 17:47, schrieb vielmaj at onid.orst.edu:
 I am using the 2010 version of Wien2k. The PT.in1 and PT.in1_st are  
 different. The PT.in1 is only printing the first line. I went back  
 and used the setrmt (3%) and I still have
 the same problem.

 I installed with the Intel Fortran Compiler 10 and MKL Libraries 9.  
 Also I made the following changes that were mentioned in the  
 hamilt.F file to get Wien to work.

 /usr/local/WIEN/SRC_lapw1# vim hamilt.F

 ! in case of older mk/vml you may miss vzcis (IPO Error: unresolved  
 : vzcis_)
 ! Either upgrade the libraries (ifort+mkl) or:
 ! Comment the line below and uncomment the other ones.
 ! Uncomment also all other lines above where help_tmpcos occurs

 !!_COMPLEX call vzcis(j_end(ihelp),help1,help_exp)
 !_COMPLEX call vdcos(j_end(ihelp),help1,help_tmpcos)
 !_COMPLEX call vdsin(j_end(ihelp),help1,help_tmpsin)
 !_COMPLEX do j = 1, j_end(ihelp)
 !_COMPLEX help_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
 !_COMPLEX end do


 !_COMPLEX deallocate( help_tmpcos, help_tmpsin )
 !_COMPLEX DOUBLE PRECISION, allocatable :: help_tmpsin(:), help_tmpcos(:)
 !_COMPLEX allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )


 Quoting Peter Blaha pblaha at theochem.tuwien.ac.at:

 Which version of WIEN2k are you using ?

 Checkout Pt.in1 and compare it with Pt.in1_st

 The case.in1 file is updated in each scf cycle and somehow it  
 seems that in your
 version this update failed.

 PS: Your struct file does NOT have the recommended RMT values. How  
 did you select
 the RMTs ? setrmt gives something else.
 Eventually, this could also be the source of your problems and you  
 did not notice
 some error/warnings occuring before ?

 Am 11.05.2011 00:18, schrieb vielmaj at onid.orst.edu:
 I am doing a simple calculation with PbTiO3 and I am having a  
 problem on the second SCF cycle.

 I get this error.

 #
 forrtl: severe (24): end-of-file during read, unit 5, file  
 /home/vielmaj/PT/PT.in1
 Image PC Routine Line Source
 lapw1 00E2926A Unknown Unknown Unknown
 lapw1 00E2846A Unknown Unknown Unknown
 lapw1 00DE269A Unknown Unknown Unknown
 lapw1 00DAA97E Unknown Unknown Unknown
 lapw1 00DA9F8A Unknown Unknown Unknown
 lapw1 00DC8E8B Unknown Unknown Unknown
 lapw1 00447548 inilpw_ 363 inilpw.f
 lapw1 0044A073 MAIN__ 42 lapw1_tmp_.F
 lapw1 00413B4E Unknown Unknown Unknown
 libc.so.6 2B0950FCDC4D Unknown Unknown Unknown
 lapw1 00413A69 Unknown Unknown Unknown

 stop error

 #

 And this is in the dayfile

 #

 lapw1 (15:13:42) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+16io 0pf+0w
 error: command /usr/local/WIEN/lapw1 lapw1.def failed

 stop error

 #

 Here is my struct file

 #
 PT
 P LATTICE,NONEQUIV.ATOMS: 499_P4mm
 MODE OF CALC=RELA unit=ang
 7.530562 7.530562 7.882051 90.00 90.00 90.00
 ATOM -1: X=0. Y=0. Z=0.
 MULT= 1 ISPLIT=-2
 Pb NPT= 781 R0=0.0500 RMT= 3.2500 Z: 82.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -2: X=0.5000 Y=0.5000 Z=0.5400
 MULT= 1 ISPLIT=-2
 Ti NPT= 781 R0=0.5000 RMT= 1.8000 Z: 22.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -3: X=0.5000 Y=0.5000 Z=0.1180
 MULT= 1 ISPLIT=-2
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -4: X=0.5000 Y=0. Z=0.6210
 MULT= 2 ISPLIT= 8
 -4: X=0. Y=0.5000 Z=0.6210
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 8 NUMBER OF SYMMETRY OPERATIONS
 -1 0 0 0.
 0-1 0 0.
 0 0 1 0.
 1
 -1 0 0 0.
 0 1

[Wien] lapw1 problem with PbTiO3

2011-05-12 Thread viel...@onid.orst.edu
I changed the x_lapw script to the one mentioned in the following  
forum title severe bug in x_lapw.  The PbTiO3 calculations work now.

Thanks,

Jason

Quoting Peter Blaha pblaha at theochem.tuwien.ac.at:

 Have you been able to run any other example successfully ?

 The problem is most likely not in the compilation, but in the x_lapw script,
 as case.in1 is modified after the first lapw2 call (thus you can run  
 the first scf iteration, but
 at the lapw2 step case.in1 gets cut and the second scf cycle fails)

 You may have downloaded a buggy version, and similar problems were  
 later on discussed (and fixed)
 on the mailing list.

 I suggest to upgrade.

 Am 11.05.2011 17:47, schrieb vielmaj at onid.orst.edu:
 I am using the 2010 version of Wien2k. The PT.in1 and PT.in1_st are  
 different. The PT.in1 is only printing the first line. I went back  
 and used the setrmt (3%) and I still have
 the same problem.

 I installed with the Intel Fortran Compiler 10 and MKL Libraries 9.  
 Also I made the following changes that were mentioned in the  
 hamilt.F file to get Wien to work.

 /usr/local/WIEN/SRC_lapw1# vim hamilt.F

 ! in case of older mk/vml you may miss vzcis (IPO Error: unresolved  
 : vzcis_)
 ! Either upgrade the libraries (ifort+mkl) or:
 ! Comment the line below and uncomment the other ones.
 ! Uncomment also all other lines above where help_tmpcos occurs

 !!_COMPLEX call vzcis(j_end(ihelp),help1,help_exp)
 !_COMPLEX call vdcos(j_end(ihelp),help1,help_tmpcos)
 !_COMPLEX call vdsin(j_end(ihelp),help1,help_tmpsin)
 !_COMPLEX do j = 1, j_end(ihelp)
 !_COMPLEX help_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
 !_COMPLEX end do


 !_COMPLEX deallocate( help_tmpcos, help_tmpsin )
 !_COMPLEX DOUBLE PRECISION, allocatable :: help_tmpsin(:), help_tmpcos(:)
 !_COMPLEX allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )


 Quoting Peter Blaha pblaha at theochem.tuwien.ac.at:

 Which version of WIEN2k are you using ?

 Checkout Pt.in1 and compare it with Pt.in1_st

 The case.in1 file is updated in each scf cycle and somehow it  
 seems that in your
 version this update failed.

 PS: Your struct file does NOT have the recommended RMT values. How  
 did you select
 the RMTs ? setrmt gives something else.
 Eventually, this could also be the source of your problems and you  
 did not notice
 some error/warnings occuring before ?

 Am 11.05.2011 00:18, schrieb vielmaj at onid.orst.edu:
 I am doing a simple calculation with PbTiO3 and I am having a  
 problem on the second SCF cycle.

 I get this error.

 #
 forrtl: severe (24): end-of-file during read, unit 5, file  
 /home/vielmaj/PT/PT.in1
 Image PC Routine Line Source
 lapw1 00E2926A Unknown Unknown Unknown
 lapw1 00E2846A Unknown Unknown Unknown
 lapw1 00DE269A Unknown Unknown Unknown
 lapw1 00DAA97E Unknown Unknown Unknown
 lapw1 00DA9F8A Unknown Unknown Unknown
 lapw1 00DC8E8B Unknown Unknown Unknown
 lapw1 00447548 inilpw_ 363 inilpw.f
 lapw1 0044A073 MAIN__ 42 lapw1_tmp_.F
 lapw1 00413B4E Unknown Unknown Unknown
 libc.so.6 2B0950FCDC4D Unknown Unknown Unknown
 lapw1 00413A69 Unknown Unknown Unknown

 stop error

 #

 And this is in the dayfile

 #

 lapw1 (15:13:42) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+16io 0pf+0w
 error: command /usr/local/WIEN/lapw1 lapw1.def failed

 stop error

 #

 Here is my struct file

 #
 PT
 P LATTICE,NONEQUIV.ATOMS: 499_P4mm
 MODE OF CALC=RELA unit=ang
 7.530562 7.530562 7.882051 90.00 90.00 90.00
 ATOM -1: X=0. Y=0. Z=0.
 MULT= 1 ISPLIT=-2
 Pb NPT= 781 R0=0.0500 RMT= 3.2500 Z: 82.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -2: X=0.5000 Y=0.5000 Z=0.5400
 MULT= 1 ISPLIT=-2
 Ti NPT= 781 R0=0.5000 RMT= 1.8000 Z: 22.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -3: X=0.5000 Y=0.5000 Z=0.1180
 MULT= 1 ISPLIT=-2
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -4: X=0.5000 Y=0. Z=0.6210
 MULT= 2 ISPLIT= 8
 -4: X=0. Y=0.5000 Z=0.6210
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 8 NUMBER OF SYMMETRY OPERATIONS
 -1 0 0 0.
 0-1 0 0.
 0 0 1 0.
 1
 -1 0 0 0.
 0 1 0 0.
 0 0 1

[Wien] lapw1 problem with PbTiO3

2011-05-11 Thread Peter Blaha
Which version of WIEN2k are you using ?

Checkout Pt.in1 and compare it with Pt.in1_st

The case.in1 file is updated in each scf cycle and somehow it seems that in your
version this update failed.

PS: Your struct file does NOT have the recommended RMT values. How did you 
select
the RMTs ? setrmtgives something else.
Eventually, this could also be the source of your problems and you did not 
notice
some error/warnings occuring before ?

Am 11.05.2011 00:18, schrieb vielmaj at onid.orst.edu:
 I am doing a simple calculation with PbTiO3 and I am having a problem on the 
 second SCF cycle.

 I get this error.

 #
 forrtl: severe (24): end-of-file during read, unit 5, file 
 /home/vielmaj/PT/PT.in1
 Image PC Routine Line Source
 lapw1 00E2926A Unknown Unknown Unknown
 lapw1 00E2846A Unknown Unknown Unknown
 lapw1 00DE269A Unknown Unknown Unknown
 lapw1 00DAA97E Unknown Unknown Unknown
 lapw1 00DA9F8A Unknown Unknown Unknown
 lapw1 00DC8E8B Unknown Unknown Unknown
 lapw1 00447548 inilpw_ 363 inilpw.f
 lapw1 0044A073 MAIN__ 42 lapw1_tmp_.F
 lapw1 00413B4E Unknown Unknown Unknown
 libc.so.6 2B0950FCDC4D Unknown Unknown Unknown
 lapw1 00413A69 Unknown Unknown Unknown

 stop error

 #

 And this is in the dayfile

 #

 lapw1 (15:13:42) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+16io 0pf+0w
 error: command /usr/local/WIEN/lapw1 lapw1.def failed

 stop error

 #

 Here is my struct file

 #
 PT
 P LATTICE,NONEQUIV.ATOMS: 499_P4mm
 MODE OF CALC=RELA unit=ang
 7.530562 7.530562 7.882051 90.00 90.00 90.00
 ATOM -1: X=0. Y=0. Z=0.
 MULT= 1 ISPLIT=-2
 Pb NPT= 781 R0=0.0500 RMT= 3.2500 Z: 82.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -2: X=0.5000 Y=0.5000 Z=0.5400
 MULT= 1 ISPLIT=-2
 Ti NPT= 781 R0=0.5000 RMT= 1.8000 Z: 22.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -3: X=0.5000 Y=0.5000 Z=0.1180
 MULT= 1 ISPLIT=-2
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -4: X=0.5000 Y=0. Z=0.6210
 MULT= 2 ISPLIT= 8
 -4: X=0. Y=0.5000 Z=0.6210
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 8 NUMBER OF SYMMETRY OPERATIONS
 -1 0 0 0.
 0-1 0 0.
 0 0 1 0.
 1
 -1 0 0 0.
 0 1 0 0.
 0 0 1 0.
 2
 0-1 0 0.
 -1 0 0 0.
 0 0 1 0.
 3
 0 1 0 0.
 -1 0 0 0.
 0 0 1 0.
 4
 0-1 0 0.
 1 0 0 0.
 0 0 1 0.
 5
 0 1 0 0.
 1 0 0 0.
 0 0 1 0.
 6
 1 0 0 0.
 0-1 0 0.
 0 0 1 0.
 7
 1 0 0 0.
 0 1 0 0.
 0 0 1 0.
 8

 #

 Thanks,
 Jason Vielma

 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

-- 
-
Peter Blaha
Inst. Materials Chemistry, TU Vienna
Getreidemarkt 9, A-1060 Vienna, Austria
Tel: +43-1-5880115671
Fax: +43-1-5880115698
email: pblaha at theochem.tuwien.ac.at
-


[Wien] lapw1 problem with PbTiO3

2011-05-11 Thread viel...@onid.orst.edu
I am using the 2010 version of Wien2k.  The PT.in1 and PT.in1_st are  
different.  The PT.in1 is only printing the first line. I went back  
and used the setrmt (3%) and I still have the same problem.

I installed with the Intel Fortran Compiler 10 and MKL Libraries 9.   
Also I made the following changes that were mentioned in the hamilt.F  
file to get Wien to work.

/usr/local/WIEN/SRC_lapw1# vim hamilt.F

! in case of older mk/vml you may miss vzcis (IPO Error: unresolved : vzcis_)
! Either upgrade the libraries (ifort+mkl) or:
! Comment the line below and uncomment the other ones.
! Uncomment also all other lines above where   help_tmpcos occurs

!!_COMPLEX call vzcis(j_end(ihelp),help1,help_exp)
!_COMPLEX call vdcos(j_end(ihelp),help1,help_tmpcos)
!_COMPLEX call vdsin(j_end(ihelp),help1,help_tmpsin)
!_COMPLEX do j = 1, j_end(ihelp)
!_COMPLEXhelp_exp(j) = dcmplx(help_tmpcos(j),help_tmpsin(j))
!_COMPLEX end do


!_COMPLEX  deallocate( help_tmpcos, help_tmpsin )
!_COMPLEX  DOUBLE PRECISION, allocatable ::   help_tmpsin(:),  
help_tmpcos(:)
!_COMPLEX  allocate( help_tmpcos(HSdim_r), help_tmpsin(HSdim_r) )


Quoting Peter Blaha pblaha at theochem.tuwien.ac.at:

 Which version of WIEN2k are you using ?

 Checkout Pt.in1 and compare it with Pt.in1_st

 The case.in1 file is updated in each scf cycle and somehow it seems  
 that in your
 version this update failed.

 PS: Your struct file does NOT have the recommended RMT values. How  
 did you select
 the RMTs ? setrmtgives something else.
 Eventually, this could also be the source of your problems and you  
 did not notice
 some error/warnings occuring before ?

 Am 11.05.2011 00:18, schrieb vielmaj at onid.orst.edu:
 I am doing a simple calculation with PbTiO3 and I am having a  
 problem on the second SCF cycle.

 I get this error.

 #
 forrtl: severe (24): end-of-file during read, unit 5, file  
 /home/vielmaj/PT/PT.in1
 Image PC Routine Line Source
 lapw1 00E2926A Unknown Unknown Unknown
 lapw1 00E2846A Unknown Unknown Unknown
 lapw1 00DE269A Unknown Unknown Unknown
 lapw1 00DAA97E Unknown Unknown Unknown
 lapw1 00DA9F8A Unknown Unknown Unknown
 lapw1 00DC8E8B Unknown Unknown Unknown
 lapw1 00447548 inilpw_ 363 inilpw.f
 lapw1 0044A073 MAIN__ 42 lapw1_tmp_.F
 lapw1 00413B4E Unknown Unknown Unknown
 libc.so.6 2B0950FCDC4D Unknown Unknown Unknown
 lapw1 00413A69 Unknown Unknown Unknown

 stop error

 #

 And this is in the dayfile

 #

 lapw1 (15:13:42) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+16io 0pf+0w
 error: command /usr/local/WIEN/lapw1 lapw1.def failed

 stop error

 #

 Here is my struct file

 #
 PT
 P LATTICE,NONEQUIV.ATOMS: 499_P4mm
 MODE OF CALC=RELA unit=ang
 7.530562 7.530562 7.882051 90.00 90.00 90.00
 ATOM -1: X=0. Y=0. Z=0.
 MULT= 1 ISPLIT=-2
 Pb NPT= 781 R0=0.0500 RMT= 3.2500 Z: 82.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -2: X=0.5000 Y=0.5000 Z=0.5400
 MULT= 1 ISPLIT=-2
 Ti NPT= 781 R0=0.5000 RMT= 1.8000 Z: 22.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -3: X=0.5000 Y=0.5000 Z=0.1180
 MULT= 1 ISPLIT=-2
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 ATOM -4: X=0.5000 Y=0. Z=0.6210
 MULT= 2 ISPLIT= 8
 -4: X=0. Y=0.5000 Z=0.6210
 O NPT= 781 R0=0.0001 RMT= 1.5000 Z: 8.0
 LOCAL ROT MATRIX: 1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
 8 NUMBER OF SYMMETRY OPERATIONS
 -1 0 0 0.
 0-1 0 0.
 0 0 1 0.
 1
 -1 0 0 0.
 0 1 0 0.
 0 0 1 0.
 2
 0-1 0 0.
 -1 0 0 0.
 0 0 1 0.
 3
 0 1 0 0.
 -1 0 0 0.
 0 0 1 0.
 4
 0-1 0 0.
 1 0 0 0.
 0 0 1 0.
 5
 0 1 0 0.
 1 0 0 0.
 0 0 1 0.
 6
 1 0 0 0.
 0-1 0 0.
 0 0 1 0.
 7
 1 0 0 0.
 0 1 0 0.
 0 0 1 0.
 8

 #

 Thanks,
 Jason Vielma

 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

[Wien] lapw1 problem with PbTiO3

2011-05-10 Thread viel...@onid.orst.edu
I am doing a simple calculation with PbTiO3 and I am having a problem  
on the second SCF cycle.

I get this error.

#
forrtl: severe (24): end-of-file during read, unit 5, file  
/home/vielmaj/PT/PT.in1
Image  PCRoutineLineSource
lapw1  00E2926A  Unknown   Unknown  Unknown
lapw1  00E2846A  Unknown   Unknown  Unknown
lapw1  00DE269A  Unknown   Unknown  Unknown
lapw1  00DAA97E  Unknown   Unknown  Unknown
lapw1  00DA9F8A  Unknown   Unknown  Unknown
lapw1  00DC8E8B  Unknown   Unknown  Unknown
lapw1  00447548  inilpw_   363  inilpw.f
lapw1  0044A073  MAIN__ 42   
lapw1_tmp_.F
lapw1  00413B4E  Unknown   Unknown  Unknown
libc.so.6  2B0950FCDC4D  Unknown   Unknown  Unknown
lapw1  00413A69  Unknown   Unknown  Unknown

   stop error

#

And this is in the dayfile

#

   lapw1   (15:13:42) 0.0u 0.0s 0:00.00 0.0% 0+0k 0+16io 0pf+0w
error: command   /usr/local/WIEN/lapw1 lapw1.def   failed

   stop error

#

Here is my struct file

#
PT
P   LATTICE,NONEQUIV.ATOMS:  499_P4mm
MODE OF CALC=RELA unit=ang
   7.530562  7.530562  7.882051 90.00 90.00 90.00
ATOM  -1: X=0. Y=0. Z=0.
   MULT= 1  ISPLIT=-2
Pb NPT=  781  R0=0.0500 RMT=3.2500   Z: 82.0
LOCAL ROT MATRIX:1.000 0.000 0.000
  0.000 1.000 0.000
  0.000 0.000 1.000
ATOM  -2: X=0.5000 Y=0.5000 Z=0.5400
   MULT= 1  ISPLIT=-2
Ti NPT=  781  R0=0.5000 RMT=1.8000   Z: 22.0
LOCAL ROT MATRIX:1.000 0.000 0.000
  0.000 1.000 0.000
  0.000 0.000 1.000
ATOM  -3: X=0.5000 Y=0.5000 Z=0.1180
   MULT= 1  ISPLIT=-2
O  NPT=  781  R0=0.0001 RMT=1.5000   Z:  8.0
LOCAL ROT MATRIX:1.000 0.000 0.000
  0.000 1.000 0.000
  0.000 0.000 1.000
ATOM  -4: X=0.5000 Y=0. Z=0.6210
   MULT= 2  ISPLIT= 8
   -4: X=0. Y=0.5000 Z=0.6210
O  NPT=  781  R0=0.0001 RMT=1.5000   Z:  8.0
LOCAL ROT MATRIX:1.000 0.000 0.000
  0.000 1.000 0.000
  0.000 0.000 1.000
8  NUMBER OF SYMMETRY OPERATIONS
-1 0 0 0.
  0-1 0 0.
  0 0 1 0.
1
-1 0 0 0.
  0 1 0 0.
  0 0 1 0.
2
  0-1 0 0.
-1 0 0 0.
  0 0 1 0.
3
  0 1 0 0.
-1 0 0 0.
  0 0 1 0.
4
  0-1 0 0.
  1 0 0 0.
  0 0 1 0.
5
  0 1 0 0.
  1 0 0 0.
  0 0 1 0.
6
  1 0 0 0.
  0-1 0 0.
  0 0 1 0.
7
  1 0 0 0.
  0 1 0 0.
  0 0 1 0.
8

#

Thanks,
Jason Vielma



[Wien] lapw1 failed

2011-04-30 Thread Peter Blaha
But check the final results with RKMAX 3 or 3.5 !!

Am 29.04.2011 23:44, schrieb Yang Ding:
 Dear prof.  Marks,

 I reduced the Rkmax to 2.5 , and now calculation is going well. Many thanks 
 for the help!

 best regards,

 Yang Ding

 On 4/28/2011 11:49 PM, Laurence Marks wrote:

 The size/plane waves scales as Rkmax/min(rmt) so with hydrogen of 0.5 rmt 
 2.5 or so is fine. Look in the faq about hydrogen.

 On Apr 28, 2011 11:20 PM, Yang Ding yangding at aps.anl.gov 
 mailto:yangding at aps.anl.gov wrote:
  Dear Professor Marks,
 
  Many thanks for your quick reply. I used default RKMAX 7.0 in
  calculations. I have read the FAQ on the wien2k web page, but I still
  have not found the clues.
  What confused me is that the workstation has 24 GB memory, but why
  still not enough for the calculations? Would you please educate me a
  bit on how to increase the memory?
 
  I will try RKMAX as 2.5 and increase the RMT of C as you suggested.
 
  Thanks again,
  Yang
 
  On 4/28/2011 10:07 PM, Laurence Marks wrote:
  Almost certainly it is what it implies -- there is not enough memory
  for the calculation to run. Did you run with a small RKMAX, e.g. 2.5?
  (Check the FAQ).
 
  N.B., you may need to use .lcore or increase the RMT of the C
  otherwise you lose some of the C 1s core electrons.
 
  2011/4/28yangding at aps.anl.gov mailto:yangding at aps.anl.gov:
  Dear WIEN users,
 
  I am using WIEN10.1 to calculate the CO(C5H5)2 (structure file is 
  attached). However, I always got error message during lapw1 process. 
  There is no detailed error
 information in the lapw1.error file except for Error in LAPW1. The Dayfile 
 and STDOUT messages are listed as following. I will appreciate if you could 
 provide any clue
 on this problem.
 
  regards,
  Yang Ding
 
  --
  System:
  Hardware: HP Z800 workstation (Intel XEON)
  OS: Fedora 11:0
  RAM: 24 GB
  Virtual memory: 32 GB
 
  Dimension parameters:
  NMATMAX = 15
  NUME = 5
 
  --
  Dayfile:
 
 
  start (Thu Apr 28 18:54:43 CDT 2011) with lapw0 (1/99 to go)
 
  cycle 1 (Thu Apr 28 18:54:43 CDT 2011) (1/99 to go)
 
  lapw0 (18:54:43) 83.169u 1.176s 1:24.67 99.5% 0+0k 64496+52288io 88pf+0w
  lapw1 (18:56:07) 32.515u 0.242s 0:32.81 99.8% 0+0k 104+17936io 0pf+0w
  error: command /home/yang/WIEN/lapw1 lapw1.def failed
 
  stop error
  --
  STDOUT
 
  APW0 END
  forrtl: severe (41): insufficient virtual memory
  Image PC Routine Line Source
  lapw1 0051868D Unknown Unknown Unknown
  lapw1 00517195 Unknown Unknown Unknown
  lapw1 004B8130 Unknown Unknown Unknown
  lapw1 0047192A Unknown Unknown Unknown
  lapw1 0049C395 Unknown Unknown Unknown
  lapw1 0044E0FB Unknown Unknown Unknown
  lapw1 00412286 Unknown Unknown Unknown
  lapw1 0040DF5D Unknown Unknown Unknown
  lapw1 0043436C Unknown Unknown Unknown
  lapw1 00404ABC Unknown Unknown Unknown
  libc.so.6 003462C1EA4D Unknown Unknown Unknown
  lapw1 004049B9 Unknown Unknown Unknown
 
  stop error
  ___
  Wien mailing list
  Wien at zeus.theochem.tuwien.ac.at mailto:Wien at 
  zeus.theochem.tuwien.ac.at
  http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
 
 
 
 
 



 ___
 Wien mailing list
 Wien at zeus.theochem.tuwien.ac.at
 http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien

-- 
-
Peter Blaha
Inst. Materials Chemistry, TU Vienna
Getreidemarkt 9, A-1060 Vienna, Austria
Tel: +43-1-5880115671
Fax: +43-1-5880115698
email: pblaha at theochem.tuwien.ac.at
-


[Wien] lapw1 failed

2011-04-28 Thread yangd...@aps.anl.gov
Dear WIEN users,

I am using WIEN10.1 to calculate the CO(C5H5)2 (structure file is attached). 
However, I always got error message during lapw1 process. There is no detailed 
error information in the lapw1.error file except for Error in LAPW1. The 
Dayfile and STDOUT messages are listed as following. I will appreciate if you 
could provide any clue on this problem.

regards,
Yang Ding

--
System: 
Hardware: HP Z800 workstation (Intel XEON)
OS: Fedora 11:0
RAM: 24 GB
Virtual memory: 32 GB

Dimension parameters:
NMATMAX = 15
NUME = 5

--
Dayfile:


start   (Thu Apr 28 18:54:43 CDT 2011) with lapw0 (1/99 to go)

cycle 1 (Thu Apr 28 18:54:43 CDT 2011)  (1/99 to go)

   lapw0   (18:54:43) 83.169u 1.176s 1:24.67 99.5% 0+0k 64496+52288io 
 88pf+0w
   lapw1   (18:56:07) 32.515u 0.242s 0:32.81 99.8% 0+0k 104+17936io 0pf+0w
error: command   /home/yang/WIEN/lapw1 lapw1.def   failed

   stop error

--
STDOUT

APW0 END
forrtl: severe (41): insufficient virtual memory
Image  PCRoutineLineSource  
   
lapw1  0051868D  Unknown   Unknown  Unknown
lapw1  00517195  Unknown   Unknown  Unknown
lapw1  004B8130  Unknown   Unknown  Unknown
lapw1  0047192A  Unknown   Unknown  Unknown
lapw1  0049C395  Unknown   Unknown  Unknown
lapw1  0044E0FB  Unknown   Unknown  Unknown
lapw1  00412286  Unknown   Unknown  Unknown
lapw1  0040DF5D  Unknown   Unknown  Unknown
lapw1  0043436C  Unknown   Unknown  Unknown
lapw1  00404ABC  Unknown   Unknown  Unknown
libc.so.6  003462C1EA4D  Unknown   Unknown  Unknown
lapw1  004049B9  Unknown   Unknown  Unknown

   stop error
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[Wien] lapw1 error

2010-11-27 Thread hua peng
Dear users,

I have performed a simple scf calculation for SrTiO3 using Wien2k_08. If I
run scf with k point set to 100, it runs smoothly. But when I increase the
number of k point to 1000 or 1, it stops and shows error:

LAPW0 END

SELECT - Error

   stop error



In *lapw1.error* file

?'SELECT' - no energy limits found for L= 0


 'SELECT' - E-bottom -200.0   E-top -200.0?



When I run the job parallel, it shows error

LAPW1 END

 LAPW1 END

 LAPW1 END

 LAPW1 END

 LAPW1 END

 LAPW1 END

LAPW2 - FERMI; weighs written

 LAPW2 END

 LAPW2 END

 LAPW2 END

 LAPW2 END

 LAPW2 END

 LAPW2 END

 SUMPARA END

 CORE  END

 MIXER END

(standard_in) 1: illegal character: N

(standard_in) 1: illegal character: N

(standard_in) 1: illegal character: N

(standard_in) 1: illegal character: N

(standard_in) 1: illegal character: N

(standard_in) 1: illegal character: N

ctest: Subscript out of range.



Does anyone have a comment? How should I fix this problem? I'll appreciate
your answer.



Regards

Hua Peng

-
Hua Peng
Department of Physics
ShanDong University
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