Re: [Wien] pbs_tmrsh x ssh
Hi, Another link that can be useful is: http://www.open-mpi.org/faq/?category=building#build-rte-tm Anyway, I will try it and let you know the results. All the best, Luis 2014-07-23 18:30 GMT-03:00 Gavin Abo gs...@crimson.ua.edu: It seems to me that pbs_tmrsh is only available on systems that have PBS Professional. There is information about it in the PBS Professional support documentation (Reference Guide and User Guide) on Altair's PBS Works website: http://www.pbsworks.com/(S(k4q1hy4krq5yn3rw0qjyvcmg))/SupportDocuments.aspx I would say replace ssh by pbs_tmrsh in siteconfig and see what happens; either it works as an ssh replacement or it doesn't. On 7/23/2014 2:43 PM, Laurence Marks wrote: Hint: man pbs_tmrsh. I don't have it, and in fact I cannot find a web page with it anywhere. If you can find a link post it? On Wed, Jul 23, 2014 at 3:07 PM, Luis Ogando lcoda...@gmail.com wrote: Dear Wien2k community, SSH is forbidden in my computation center due to misuse. I tried the hopen suggestion given by Prof. Marks to circumvent the ssh use without success. By now, I am only able to use one cluster node each time (as in a SMP machine), but the guys from computation center said that pbs_tmrsh could be a possible alternative to ssh among the nodes. Well, I would like to know if someone has any experience in using pbs_tmrsh with Wien2k. Any hint or advice ? All the best, Luis -- Professor Laurence Marks Department of Materials Science and Engineering Northwestern University www.numis.northwestern.edu 1-847-491-3996 Co-Editor, Acta Cryst A Research is to see what everybody else has seen, and to think what nobody else has thought Albert Szent-Gyorgi ___ Wien mailing list Wien@zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html ___ Wien mailing list Wien@zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
Re: [Wien] pbs_tmrsh x ssh
Hi Prof. Marks, Gavin and others, Wien2k is finally running in more than one node without ssh. My steps: 1) I rebuilt the OpenMPI wrappers with --with-tm option in configure. This should work for PBS Pro , Open PBS and Torque ( see http://www.open-mpi.org/faq/?category=building#build-rte-tm ). 2) I believe that this will influence only mpirun, but, in any case, I recompiled FFTW and Wien2k with the new wrappers. 3) As it is advised not to use pbs_tmrsh when OpenMPI is built with --with-tm option, I set USE_REMOTE to 0 in the parallel_options file. This avoids ssh or equivalent commands during Wien2k execution. The only issue is that if I want to use -it and a combination of K-point and MPI parallelizations, I have to set the scratch to the local directory. I hope that this information may be useful for others. All the best, Luis 2014-07-24 8:45 GMT-03:00 Luis Ogando lcoda...@gmail.com: Hi, Another link that can be useful is: http://www.open-mpi.org/faq/?category=building#build-rte-tm Anyway, I will try it and let you know the results. All the best, Luis 2014-07-23 18:30 GMT-03:00 Gavin Abo gs...@crimson.ua.edu: It seems to me that pbs_tmrsh is only available on systems that have PBS Professional. There is information about it in the PBS Professional support documentation (Reference Guide and User Guide) on Altair's PBS Works website: http://www.pbsworks.com/(S(k4q1hy4krq5yn3rw0qjyvcmg))/SupportDocuments.aspx I would say replace ssh by pbs_tmrsh in siteconfig and see what happens; either it works as an ssh replacement or it doesn't. On 7/23/2014 2:43 PM, Laurence Marks wrote: Hint: man pbs_tmrsh. I don't have it, and in fact I cannot find a web page with it anywhere. If you can find a link post it? On Wed, Jul 23, 2014 at 3:07 PM, Luis Ogando lcoda...@gmail.com wrote: Dear Wien2k community, SSH is forbidden in my computation center due to misuse. I tried the hopen suggestion given by Prof. Marks to circumvent the ssh use without success. By now, I am only able to use one cluster node each time (as in a SMP machine), but the guys from computation center said that pbs_tmrsh could be a possible alternative to ssh among the nodes. Well, I would like to know if someone has any experience in using pbs_tmrsh with Wien2k. Any hint or advice ? All the best, Luis -- Professor Laurence Marks Department of Materials Science and Engineering Northwestern University www.numis.northwestern.edu 1-847-491-3996 Co-Editor, Acta Cryst A Research is to see what everybody else has seen, and to think what nobody else has thought Albert Szent-Gyorgi ___ Wien mailing list Wien@zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html ___ Wien mailing list Wien@zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
[Wien] pbs_tmrsh x ssh
Dear Wien2k community, SSH is forbidden in my computation center due to misuse. I tried the hopen suggestion given by Prof. Marks to circumvent the ssh use without success. By now, I am only able to use one cluster node each time (as in a SMP machine), but the guys from computation center said that pbs_tmrsh could be a possible alternative to ssh among the nodes. Well, I would like to know if someone has any experience in using pbs_tmrsh with Wien2k. Any hint or advice ? All the best, Luis ___ Wien mailing list Wien@zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
Re: [Wien] pbs_tmrsh x ssh
Hint: man pbs_tmrsh. I don't have it, and in fact I cannot find a web page with it anywhere. If you can find a link post it? On Wed, Jul 23, 2014 at 3:07 PM, Luis Ogando lcoda...@gmail.com wrote: Dear Wien2k community, SSH is forbidden in my computation center due to misuse. I tried the hopen suggestion given by Prof. Marks to circumvent the ssh use without success. By now, I am only able to use one cluster node each time (as in a SMP machine), but the guys from computation center said that pbs_tmrsh could be a possible alternative to ssh among the nodes. Well, I would like to know if someone has any experience in using pbs_tmrsh with Wien2k. Any hint or advice ? All the best, Luis -- Professor Laurence Marks Department of Materials Science and Engineering Northwestern University www.numis.northwestern.edu 1-847-491-3996 Co-Editor, Acta Cryst A Research is to see what everybody else has seen, and to think what nobody else has thought Albert Szent-Gyorgi ___ Wien mailing list Wien@zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
Re: [Wien] pbs_tmrsh x ssh
It seems to me that pbs_tmrsh is only available on systems that have PBS Professional. There is information about it in the PBS Professional support documentation (Reference Guide and User Guide) on Altair's PBS Works website: http://www.pbsworks.com/(S(k4q1hy4krq5yn3rw0qjyvcmg))/SupportDocuments.aspx I would say replace ssh by pbs_tmrsh in siteconfig and see what happens; either it works as an ssh replacement or it doesn't. On 7/23/2014 2:43 PM, Laurence Marks wrote: Hint: man pbs_tmrsh. I don't have it, and in fact I cannot find a web page with it anywhere. If you can find a link post it? On Wed, Jul 23, 2014 at 3:07 PM, Luis Ogando lcoda...@gmail.com mailto:lcoda...@gmail.com wrote: Dear Wien2k community, SSH is forbidden in my computation center due to misuse. I tried the hopen suggestion given by Prof. Marks to circumvent the ssh use without success. By now, I am only able to use one cluster node each time (as in a SMP machine), but the guys from computation center said that pbs_tmrsh could be a possible alternative to ssh among the nodes. Well, I would like to know if someone has any experience in using pbs_tmrsh with Wien2k. Any hint or advice ? All the best, Luis -- Professor Laurence Marks Department of Materials Science and Engineering Northwestern University www.numis.northwestern.edu http://www.numis.northwestern.edu 1-847-491-3996 Co-Editor, Acta Cryst A Research is to see what everybody else has seen, and to think what nobody else has thought Albert Szent-Gyorgi ___ Wien mailing list Wien@zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien SEARCH the MAILING-LIST at: http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
