[Wiki-research-l] Wikipedia-Europe PMC hackathon

2015-06-09 Thread Dan Bolser
Sorry if this is the wrong list, please feel free to distribute as
appropriate.

Details (developing) here:
https://en.wikipedia.org/wiki/Wikipedia:WikiProject_Computational_Biology/EBI_hackathon_on_September_4,_2015

Message from Jo McEntyre:

We are organising a Wikipedia-Europe PMC hackathon on 4th Sept on the
genome campus, around the Wikipedia Science conference
https://wikimedia.org.uk/wiki/Wikipedia_Science_Conference.

With Daniel Mietchen, the three themes we have identified are:
- contributing datasets e.g. data citations, text-mined entities from
Europe PMC to Wikidata & possibly seeing this pushed through to some
Wikipedia pages
-  import of full text articles into Wikisource and potential
highlighting named entities
- pushing PMID-PMCID-DOI mapping to Wikidata/Wikipedia

We would very much like you to attend!
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Re: [Wiki-research-l] # of citations on Wikipedia?

2012-04-29 Thread Dan Bolser
On this topic, will Wikipedia ever implement a 'citation tool'? I'm
thinking something like Mendeley or EndNote for wiki text? It would be
great to have citations more formally implemented within MW (via an
extension).


Cheers,
Dan.

On 20 April 2012 18:31, phoebe ayers  wrote:
> Hi all,
>
> Has there been any research done into: the number of citations (e.g.
> to books, journal articles, online sources, everything together) on
> Wikipedia (any language, or all)? The distribution of citations over
> different kinds or qualities of articles? # of uses of citation
> templates? Anything like this?
>
> I realize this is hard to count, averages are meaningless in this
> context, and any number will no doubt be imprecise! But anything would
> be helpful. I have vague memories of seeing some citation studies like
> this but don't remember the details.
>
> Thanks,
> -- phoebe
>
> --
> * I use this address for lists; send personal messages to phoebe.ayers
>  gmail.com *
>
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[Wiki-research-l] Analysis of spelling mistakes in WP vs. 'other' sites?

2012-03-16 Thread Dan Bolser
Hi,

Many people in my professional circle berate the quality of Wikipedia
(without any grounds, IMHO). It occurred to me recently that one
simple example of the quality of Wikipeida is the fact that you can
almost guarantee (IME) the correctness of the spelling in WP.

Has anyone ever done a systematic analysis of the number of spelling
errors compared to 'other' sites? It seems that when reading read-only
corporate or academic websites, spelling mistakes are not infrequent.

This would be a nice factoid to be able to throw out when the next
person says "well, I read it in WP so...". (Of course I'm assuming
spelling is a proxy for overall quality, which is clearly arguable,
but it's a good sign ;-).


Cheers,
Dan.

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Re: [Wiki-research-l] WikiPapers: all the literature about wikis compiled in a... wiki

2012-02-05 Thread Dan Bolser
On 3 February 2012 19:48, emijrp  wrote:
> 2012/2/2 Dan Bolser 
>>
>> Since you both use SMW, it would be great to develop some way of
>> directly sharing data between the two wikis. (I'm currently
>> researching that now for a different project). So far the only
>> mechanism I have found is via the 'remote query' feature of the
>> exhibit extension:
>> http://semantic-mediawiki.org/wiki/Help:Exhibit_format
>>
>> Oh, I also just remembered this, which would be a great way for you to
>> set up sharing between wikis:
>> http://www.mediawiki.org/wiki/Extension:DSMW
>>
>> Perhaps it will be possible to add something to the regular query
>> syntax to allow 'remote queries'?
>
> I have to look at the Semantic MediaWiki features for export/import data. I
> know that there are some RDF options, but I have not tested yet.

I've been researching it for a different project, and I've written it
up what I have done so far here:
http://bioblog5000.blogspot.com/2012/02/seqwiki-integration-with-neuolex.html


>> Talking of data sharing, do you both use the same (standard?) data
>> model for describing publications? i.e. using the Dublin core
>> ontology? (Sorry for not going to check that, I figure just ask ;-)
>>
>
> Following the parameters in this
> link http://www.cs.umd.edu/projects/plus/SHOE/onts/dublin.html , this is the
> WikiPapers model:
> TITLE -> title
> CREATOR -> author
> SUBJECT -> keywords
> DESCRIPTION -> abstract
> PUBLISHER -> published in
> CONTRIBUTOR -> ?
> DATE -> year
> TYPE -> type
> FORMAT -> ?
> IDENTIFIER -> doi, arXiv, PubMed, isbn, issn
> SOURCE -> ?
> LANGUAGE -> language
> RELATION -> ?
> COVERAGE -> ?
> RIGHTS -> license
>
> format and relation have not been formally defined by Dublin. I'm not sure
> what info adds 'contributor' to 'creator', 'source' to 'publisher' and
> 'coverage' to 'abstract/keywords'.

Setting up the ontology stuff formally is also on my todo list, here
is some preliminary info:
http://bioblog5000.blogspot.com/2012/02/seqwiki-ontology-integration.html


>> Cheers,
>> Dan.
>>
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Re: [Wiki-research-l] WikiPapers: all the literature about wikis compiled in a... wiki

2012-02-02 Thread Dan Bolser
On 26 January 2012 11:59, Finn Aarup Nielsen  wrote:
>
> Hi Emijrp,
>
> On 25-01-2012 17:27, emijrp wrote:



> AcaWiki seems to have 22 summaries:
>
> http://acawiki.org/index.php?title=Special:BrowseData/Summary&Tag=Wikipedia
>
> My Brede Wiki has 75 pages (most of which refers to academic papers):
>
> http://neuro.imm.dtu.dk/wiki/Category:Wikipedia
>
>
>> I'm not sure if you want to join to the effort : ). You are more than
>> welcome to add your publications, tools and datasets. Any suggestion
>> would be great.
>
>
> You are using the same license as I am on the Brede Wiki, so you could copy
> page from my wiki to yours (or vice versa). I have been talking to the
> AcaWiki people about exchanging summaries, but we haven't set up a service
> for that yet.

Since you both use SMW, it would be great to develop some way of
directly sharing data between the two wikis. (I'm currently
researching that now for a different project). So far the only
mechanism I have found is via the 'remote query' feature of the
exhibit extension:
http://semantic-mediawiki.org/wiki/Help:Exhibit_format

Oh, I also just remembered this, which would be a great way for you to
set up sharing between wikis:
http://www.mediawiki.org/wiki/Extension:DSMW

Perhaps it will be possible to add something to the regular query
syntax to allow 'remote queries'?

Talking of data sharing, do you both use the same (standard?) data
model for describing publications? i.e. using the Dublin core
ontology? (Sorry for not going to check that, I figure just ask ;-)


Cheers,
Dan.

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Re: [Wiki-research-l] The Wikimedia Research Newsletter 1(6) - Dec 2011 is out

2011-12-30 Thread Dan Bolser
Any one mail out a print version of this?
On 28 Dec 2011 05:07, "Dario Taraborelli" 
wrote:

> The latest issue (December 2011) of the monthly Wikimedia Research
> Newsletter is out:
>
> http://meta.wikimedia.org/wiki/Research:Newsletter/2011-12-26
>
> In this issue:
>
> 1 Mental health information on Wikipedia more accurate than Britannica and
> Kaplan & Sadock psychiatry textbook
> 2 Psychologists gauge impact of Wikipedia's Rorschach test coverage
> 3 Spell-checking the English Wikipedia
> 4 Wikipedians are "smart but fun", and have expertise in topics they edit
> 5 Wikipedia as a database for structured biological data
> 6 Individual and social drivers of participation in Wikipedia
> 7 Mining article revision histories for insights into open collaboration
> 8 Briefly
> 9 References
>
> ••• 15 items were covered in this issue •••
>
> You can post suggestions and contributions for the next issue at:
> http://meta.wikimedia.org/wiki/Research_talk:Newsletter
>
> or by mail at researchn...@wikimedia.org
>
> RSS feed for the newsletter:
> http://blog.wikimedia.org/c/research-2/wikimedia-research-newsletter/feed/
>
> Best,
> Dario
>
>
> --
> Dario Taraborelli, PhD
> Senior Research Analyst
> Wikimedia Foundation
>
> http://wikimediafoundation.org
> http://nitens.org/taraborelli
>
>
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Re: [Wiki-research-l] how to query WIkipedia for a list of people who died in a given year

2011-12-23 Thread Dan Bolser
On 23 December 2011 19:59, Kim Bruning  wrote:
> On Fri, Dec 23, 2011 at 06:02:37PM +, FT2 wrote:
>> Categories are done by hand, at most one could write a bot that looked for
>> infobox or introduction text containing date of birth/death and
>> automatically add the category if it didn't exist, but as a rule it seems
>> that if someone's died then a date of death is usually there and usually so
>> are the categories you'd need.
>
> This is why we need rollout of some sort of semantic engine. I understand 
> that rolling out the existing SMW "will never happen"

Why d'you say that so categorically?

Theoretically, I don't see "why this shouldn't happen at some point".



> on wikipedia :-(, but IIRC people were working on more lightweight systems?
>
> sincerely,
>        Kim Bruning
> --
>
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Re: [Wiki-research-l] List of papers: 2596.

2011-12-22 Thread Dan Bolser
Awesome!

The January edition of the NAR [1] database issue [2] will have a
focus on wikis, so you might want to look out for that too.


Cheers,
Dan.

[1] http://nar.oxfordjournals.org/
[2] http://nar.oxfordjournals.org/content/current

On 18 Dec 2011 20:41, "emijrp"  wrote:
>
> Hi all;
>
> I just want to share with you a list of 2596 papers about wikis I generated 
> this afternoon scraping Google Scholar results.[1] To download, use: wget -t1 
> -c -i papers.txt. If you want to split the list before: split -l500 
> papers.txt papers-
>
> I'm creating a wiki to compile all available bibliography about wikis, so, I 
> need a ton of those.
>
> Regards,
> emijrp
>
> [1] http://pastebin.com/6MzvR6Vi
>
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