[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[matej_suchanek]

matej_suchanek closed this task as "Resolved".
matej_suchanek assigned this task to Nikki.

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To: Nikki, matej_suchanek
Cc: Bugreporter, ArthurPSmith, Manuel, TheDJ, Aklapper, EgonWillighagen, 
Astuthiodit_1, karapayneWMDE, Invadibot, maantietaja, ItamarWMDE, Akuckartz, 
Nandana, Matlin, Lahi, Gq86, GoranSMilovanovic, QZanden, LawExplorer, _jensen, 
rosalieper, Scott_WUaS, Wikidata-bugs, aude, Lydia_Pintscher, Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  This ticket can be closed.

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To: EgonWillighagen
Cc: Bugreporter, ArthurPSmith, Manuel, TheDJ, Aklapper, EgonWillighagen, 
Astuthiodit_1, karapayneWMDE, Invadibot, maantietaja, ItamarWMDE, Akuckartz, 
Nandana, Matlin, Lahi, Gq86, GoranSMilovanovic, QZanden, LawExplorer, _jensen, 
rosalieper, Scott_WUaS, Wikidata-bugs, aude, Lydia_Pintscher, Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  Thanks for the ping! That page was indeed the lead I had at the time and 
reason to file this issue, because I could not work out (in the time I had) how 
to update that.
  
  But the solution turned out to be a lot easier for Wikidata: 
https://www.wikidata.org/w/index.php?title=MediaWiki%3AGadget-AuthorityControl.js=revision=1694196586=1409657932
  
  This was done by Nikky only last weekend 
(https://chem-bla-ics.blogspot.com/2022/08/wikidata-now-escapes-smiles-and-cxsmiles.html)
 and since I had to focus on student report grading, I forgot to update this 
ticket.

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To: EgonWillighagen
Cc: Bugreporter, ArthurPSmith, Manuel, TheDJ, Aklapper, EgonWillighagen, 
Astuthiodit_1, karapayneWMDE, Invadibot, maantietaja, ItamarWMDE, Akuckartz, 
Nandana, Matlin, Lahi, Gq86, GoranSMilovanovic, QZanden, LawExplorer, _jensen, 
rosalieper, Scott_WUaS, Wikidata-bugs, aude, Lydia_Pintscher, Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[Bugreporter]

Bugreporter added subscribers: ArthurPSmith, Bugreporter.
Bugreporter added a comment.


  Such issue is usually handled by 
https://wikidata-externalid-url.toolforge.org/ tool.

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To: Bugreporter
Cc: Bugreporter, ArthurPSmith, Manuel, TheDJ, Aklapper, EgonWillighagen, 
Astuthiodit_1, karapayneWMDE, Invadibot, maantietaja, ItamarWMDE, Akuckartz, 
Nandana, Matlin, Lahi, Gq86, GoranSMilovanovic, QZanden, LawExplorer, _jensen, 
rosalieper, Scott_WUaS, Wikidata-bugs, aude, Lydia_Pintscher, Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[Manuel]

Manuel added a project: Wikidata-Campsite.

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To: Manuel
Cc: Manuel, TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, 
Invadibot, maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, 
GoranSMilovanovic, QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, 
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen updated the task description.

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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen updated the task description.

TASK DETAIL
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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  In T307662#7906276 , 
@EgonWillighagen wrote:
  
  > I will write up some examples later today using the "bug" template, to 
highlight some issues.
  
  One done: https://phabricator.wikimedia.org/T307662#7911276

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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  **List of steps to reproduce** (step by step, including full links if 
applicable):
  
  - got to https://www.wikidata.org/wiki/Q26075#P233
  - click the link (formatter URL) for the canonical SMILES C#N
  - notice the SVG shows CH4 instead of C#N
  
  **What happens?**:
  CDKDepict which the canonical SMILES links to shows methane
  
  F35109602: image.png 
  
  instead of hydrogen cyanide:
  
  F35109600: image.png 
  
  **What should have happened instead?**:
  The canonical SMILES should be URL encoded before added as $1 in the 
formatter URL, giving 
https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=C%23N

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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  In T307662#7906210 , 
@TheDJ wrote:
  
  > This is a url encoding problem then. Do you have a link where this is 
actually occurring ?
  
  I will write up some examples later today using the "bug" template, to 
highlight some issues.

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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  In T307662#7906232 , 
@TheDJ wrote:
  
  > Math-Chemistry-Support is a project specifically about defining these 
symbols using our Math/LateX wikicode extension.
  
  Ah, got it. Yeah, theoretically possible, as there is a LaTeX package for 
drawing chemical structures, but I'm not aware of a really good, open source 
tool to convert SMILES (-variants) into TeX. Yes, agreed it doesn't fit there.

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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[TheDJ]

TheDJ added a comment.


  Math-Chemistry-Support is a project specifically about defining them symbols 
using our Math/LateX wikicode extension.

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To: TheDJ
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  In T307662#7906222 , 
@TheDJ wrote:
  
  > This is essentially: T160281 
  
  yes, same issue, but maybe not the same solution.

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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
Mbch331
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[EgonWillighagen]

EgonWillighagen added a comment.


  @TheDJ, that Math-Chemistry-Support is not (also) about chemistry?

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To: EgonWillighagen
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[TheDJ]

TheDJ added a comment.


  This is essentially: T160281 

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To: TheDJ
Cc: TheDJ, Aklapper, EgonWillighagen, Astuthiodit_1, karapayneWMDE, Invadibot, 
maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
QZanden, LawExplorer, _jensen, rosalieper, Scott_WUaS, Wikidata-bugs, aude, 
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[Wikidata-bugs] [Maniphest] T307662: help needed with encoding statement value before pass it into formatter URLs for three SMILES related properties

[TheDJ]

TheDJ edited projects, added Wikidata; removed Math-Chemistry-Support, Math.
TheDJ added a comment.


  Doesn't have anything to do with our math projects. Recat'ing under wikidata

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maantietaja, ItamarWMDE, Akuckartz, Nandana, Lahi, Gq86, GoranSMilovanovic, 
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