[Yade-dev] [Branch ~yade-dev/yade/trunk] Rev 2570: 1. Fix requestErase of erased interaction (thanks to Anton for reporting)
revno: 2570
fixes bug(s): https://launchpad.net/bugs/681018
committer: Václav Šmilauer e...@doxos.eu
branch nick: yade
timestamp: Thu 2010-11-25 09:56:11 +0100
message:
1. Fix requestErase of erased interaction (thanks to Anton for reporting)
modified:
core/InteractionContainer.cpp
--
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=== modified file 'core/InteractionContainer.cpp'
--- core/InteractionContainer.cpp 2010-11-24 19:54:29 +
+++ core/InteractionContainer.cpp 2010-11-25 08:56:11 +
@@ -84,7 +84,8 @@
void InteractionContainer::requestErase(Body::id_t id1, Body::id_t id2, bool force){
- find(id1,id2)-reset(); IdsForce v={id1,id2,force};
+ const shared_ptrInteraction I=find(id1,id2); if(!I) return;
+ I-reset(); IdsForce v={id1,id2,force};
#ifdef YADE_OPENMP
threadsPendingErase[omp_get_thread_num()].push_back(v);
#else
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[Yade-dev] [Bug 681018] Re: Crash in last revision
Now should be definitley fixed in r2570 (I tried yuor script). Let us keep this bug open, so that I remember I should add a simple test to the regression suite. Cheers, v. -- Crash in last revision https://bugs.launchpad.net/bugs/681018 You received this bug notification because you are a member of Yade developers, which is subscribed to Yade. Status in Yet Another Dynamic Engine: In Progress Bug description: The simulation starts and after couple seconds of simulation it crashes. The problem is in O.bodies.erase(i.id) Test script and backtrace are attached. ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
[Yade-dev] [Bug 681018] Re: Crash in last revision
** Branch linked: lp:yade -- Crash in last revision https://bugs.launchpad.net/bugs/681018 You received this bug notification because you are a member of Yade developers, which is subscribed to Yade. Status in Yet Another Dynamic Engine: In Progress Bug description: The simulation starts and after couple seconds of simulation it crashes. The problem is in O.bodies.erase(i.id) Test script and backtrace are attached. ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
Re: [Yade-dev] [Branch ~yade-dev/yade/trunk] Rev 2570: 1. Fix requestErase of erased interaction (thanks to Anton for reporting)
Thanks, Vaclav!
Should last commits be imported to 0.60?
Anton
On Thu, Nov 25, 2010 at 9:57 AM, nore...@launchpad.net wrote:
revno: 2570
fixes bug(s): https://launchpad.net/bugs/681018
committer: Václav Šmilauer e...@doxos.eu
branch nick: yade
timestamp: Thu 2010-11-25 09:56:11 +0100
message:
1. Fix requestErase of erased interaction (thanks to Anton for reporting)
modified:
core/InteractionContainer.cpp
--
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=== modified file 'core/InteractionContainer.cpp'
--- core/InteractionContainer.cpp 2010-11-24 19:54:29 +
+++ core/InteractionContainer.cpp 2010-11-25 08:56:11 +
@@ -84,7 +84,8 @@
void InteractionContainer::requestErase(Body::id_t id1, Body::id_t id2,
bool force){
- find(id1,id2)-reset(); IdsForce v={id1,id2,force};
+ const shared_ptrInteraction I=find(id1,id2); if(!I) return;
+ I-reset(); IdsForce v={id1,id2,force};
#ifdef YADE_OPENMP
threadsPendingErase[omp_get_thread_num()].push_back(v);
#else
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Re: [Yade-dev] [Branch ~yade-dev/yade/trunk] Rev 2570: 1. Fix requestErase of erased interaction (thanks to Anton for reporting)
Should last commits be imported to 0.60? No, 0.60 is not affected, that was bugs I introduced recently. BTW go for the final 0.60 packages, if you have a while. It would be nice to try with gcc (to have openmp), but if it is too much hassle, just do it just with clang. Cheers, Vaclav ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
Re: [Yade-dev] 0.60 rc1 package error
sudo sudo add-apt-repository ppa:yade-pkg/stable; sudo apt-get install yade-0.60 dpkg: error processing /var/cache/apt/archives/yade-0.60_rc1~maverick1_amd64.deb (--unpack): trying to overwrite '/usr/share/pixmaps/yade16x16.xpm', which is also in package yade-bzr2490 bzr2490-maverick1 Oops. Can you fix that? You will have to append version (0.60) to the icons as well (and change it in the menu file), otherwise the packages will conflict. Or perhpas just don't put the menu stuff at all, it dos not work anyway. Thanks, v. ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
Re: [Yade-dev] [Bug 681018] Re: Crash in last revision
Hi Guys! I just had a try with the new version, and finally, it works fine for me as well. Thanks Klaus On Thu, Nov 25, 2010 at 10:15 AM, Anton Gladky 681...@bugs.launchpad.netwrote: Thanks a lot, Vaclav! All is Ok now. Anton -- Crash in last revision https://bugs.launchpad.net/bugs/681018 You received this bug notification because you are a member of Yade developers, which is subscribed to Yade. Status in Yet Another Dynamic Engine: In Progress Bug description: The simulation starts and after couple seconds of simulation it crashes. The problem is in O.bodies.erase(i.id) Test script and backtrace are attached. ___ Mailing list: https://launchpad.net/~yade-devhttps://launchpad.net/%7Eyade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-devhttps://launchpad.net/%7Eyade-dev More help : https://help.launchpad.net/ListHelp -- Crash in last revision https://bugs.launchpad.net/bugs/681018 You received this bug notification because you are a member of Yade developers, which is subscribed to Yade. Status in Yet Another Dynamic Engine: In Progress Bug description: The simulation starts and after couple seconds of simulation it crashes. The problem is in O.bodies.erase(i.id) Test script and backtrace are attached. ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
[Yade-dev] [Bug 681307] Re: regular-sphere-pack examples crashes at debug-version
** Attachment added: backtrace.tgz https://bugs.launchpad.net/bugs/681307/+attachment/1744512/+files/backtrace.tgz -- regular-sphere-pack examples crashes at debug-version https://bugs.launchpad.net/bugs/681307 You received this bug notification because you are a member of Yade developers, which is subscribed to Yade. Status in Yet Another Dynamic Engine: New Bug description: regular-sphere-pack works fine at optimized build and crashes at debug-build. Backtrace is attached. ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
[Yade-dev] [Bug 681307] Re: regular-sphere-pack examples crashes at debug-version
*** This bug is a duplicate of bug 669095 *** https://bugs.launchpad.net/bugs/669095 ** This bug has been marked a duplicate of bug 669095 error: Body's boundary metting its opposite boundary * You can subscribe to bug 669095 by following this link: https://bugs.launchpad.net/yade/+bug/669095/+subscribe -- regular-sphere-pack examples crashes at debug-version https://bugs.launchpad.net/bugs/681307 You received this bug notification because you are a member of Yade developers, which is subscribed to Yade. Status in Yet Another Dynamic Engine: New Bug description: regular-sphere-pack works fine at optimized build and crashes at debug-build. Backtrace is attached. ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
[Yade-dev] [Branch ~yade-dev/yade/trunk] Rev 2571: - FlowEngine : rewrite updateVolume so that cell volumes are not computed twice.
revno: 2571
committer: Bruno Chareyre bruno.chare...@hmg.inpg.fr
branch nick: yade
timestamp: Thu 2010-11-25 13:16:32 +0100
message:
- FlowEngine : rewrite updateVolume so that cell volumes are not computed
twice.
- Remove irrelevant remark in SCPE
- Some missing 6D here and ther in decorations (could affect only
devirtualized build)
modified:
pkg/common/Cylinder.cpp
pkg/common/Cylinder.hpp
pkg/dem/FlowEngine.cpp
pkg/dem/Ig2_Sphere_Sphere_ScGeom.cpp
pkg/dem/SampleCapillaryPressureEngine.hpp
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=== modified file 'pkg/common/Cylinder.cpp'
--- pkg/common/Cylinder.cpp 2010-11-12 18:44:15 +
+++ pkg/common/Cylinder.cpp 2010-11-25 12:16:32 +
@@ -9,10 +9,11 @@
ChainedCylinder::~ChainedCylinder(){}
ChainedState::~ChainedState(){}
CylScGeom::~CylScGeom(){}
-
-
-YADE_PLUGIN(
- (Cylinder)(ChainedCylinder)(ChainedState)(CylScGeom)(Ig2_Sphere_ChainedCylinder_CylScGeom)(Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D)
+// Ig2_Sphere_ChainedCylinder_CylScGeom::~Ig2_Sphere_ChainedCylinder_CylScGeom() {}
+// Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D::~Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D() {}
+
+
+YADE_PLUGIN((Cylinder)(ChainedCylinder)(ChainedState)(CylScGeom)(Ig2_Sphere_ChainedCylinder_CylScGeom)(Ig2_ChainedCylinder_ChainedCylinder_ScGeom6D)
#ifdef YADE_OPENGL
(Gl1_Cylinder)(Gl1_ChainedCylinder)
#endif
@@ -64,7 +65,7 @@
Real dist = direction.dot(branch);
// if ((dist-interactionDetectionFactor*cylinder-radius) !c-isReal()) return (false);//position _before_ start of cylinder
if ((dist-interactionDetectionFactor*cylinder-radius) isNew) return (false);//position _before_ start of cylinder
-
+
//Check sphere-cylinder distance
Vector3r projectedP = cylinderSt-pos+shift2 + direction*dist;
branch = projectedP-sphereSt-pos;
@@ -74,7 +75,7 @@
shared_ptrCylScGeom scm;
if(!isNew) scm=YADE_PTR_CASTCylScGeom(c-geom);
else { scm=shared_ptrCylScGeom(new CylScGeom()); c-geom=scm; }
-
+
scm-radius1=sphere-radius;
scm-radius2=cylinder-radius;
scm-id3=cylinderSt-chains[cylinderSt-chainNumber][cylinderSt-rank+1];
@@ -160,9 +161,9 @@
const ChainedState bchain2 = revert? *pChain1 : *pChain2;
if (bchain2.rank-bchain1.rank != 1) {/*cerrMutual contacts in same chain between not adjacent elements, not handled*/ return false;}
if (pChain2-chainNumber!=pChain1-chainNumber) {cerrPROBLEM0124endl; return false;}
-
+
ChainedCylinder *bs1=static_castChainedCylinder*(revert? cm2.get():cm1.get());
-
+
shared_ptrScGeom6D scm;
bool isNew = !c-geom;
if(!isNew) scm=YADE_PTR_CASTScGeom6D(c-geom);
@@ -176,8 +177,8 @@
scm-contactPoint=bchain2.pos;
//bs1-segment used for fast BBs and projections + display
bs1-segment= bchain2.pos-bchain1.pos;
-#ifdef YADE_OPENGL
- //bs1-length and s1-chainedOrientation used for display only,
+#ifdef YADE_OPENGL
+ //bs1-length and s1-chainedOrientation used for display only,
bs1-length=length;
bs1-chainedOrientation.setFromTwoVectors(Vector3r::UnitZ(),bchain1.ori.conjugate()*segt);
#endif
@@ -301,10 +302,10 @@
//gluDeleteQuadric(quadObj);
//glPopMatrix();
// //GLERROR;
-//
+//
// // glEndList();}
// // glCallList(glCylinderList);
-//
+//
// }
//!## BOUNDS FUNCTOR #
=== modified file 'pkg/common/Cylinder.hpp'
--- pkg/common/Cylinder.hpp 2010-11-12 18:44:15 +
+++ pkg/common/Cylinder.hpp 2010-11-25 12:16:32 +
@@ -1,9 +1,9 @@
#pragma once
+#includeyade/pkg/common/Dispatching.hpp
#includeyade/core/Shape.hpp
#includeyade/core/State.hpp
#includeyade/core/Body.hpp
#includeyade/pkg/dem/ScGeom.hpp
-#includeyade/pkg/common/Dispatching.hpp
#includeyade/pkg/common/Sphere.hpp
#includeyade/core/Scene.hpp
#ifdef YADE_OPENGL
@@ -13,28 +13,31 @@
class Cylinder: public Sphere{
public:
- Cylinder(Real _radius, Real _length): length(_length) { /*segment=Vector3r(0,0,1)*_length;*/ radius=_radius; createIndex(); }
+// Cylinder(Real _radius, Real _length): length(_length) { /*segment=Vector3r(0,0,1)*_length;*/ radius=_radius; createIndex(); }
virtual ~Cylinder ();
YADE_CLASS_BASE_DOC_ATTRS_CTOR(Cylinder,Sphere,Geometry of a cylinder, as Minkowski sum of line and sphere.,
// ((Real,radius,NaN,,Radius [m]))
((Real,length,NaN,,Length [m]))
((Vector3r,segment,Vector3r::Zero(),,Length vector)),
createIndex();
+
/*ctor*/
+ segment=Vector3r(0,0,1)*length;
);
REGISTER_CLASS_INDEX(Cylinder,Sphere);
};
+REGISTER_SERIALIZABLE(Cylinder);
class ChainedCylinder: public Cylinder{
public:
- ChainedCylinder(Real _radius, Real _length): Cylinder(_radius,_length){}
+// ChainedCylinder(Real _radius, Real _length);/*: Cylinder(_radius,_length){}*/
virtual
Re: [Yade-dev] can't launch yade
/Starting program: /usr/bin/python /home/giulia/YADE/bin/yade-bzr2567 --debug -x/ [Thread debugging using libthread_db enabled] Usage: yade-bzr2567 [options] [ simulation.xml[.bz2] | script.py [script options]] yade-bzr2567: error: no such option: -/ / Oops, that was a typo on my part, it should have been just -x (without the slash), sorry. /Program received signal SIGFPE, Arithmetic exception. 0x7fffe6d4602f in OpenMPAccumulatordouble::OpenMPAccumulator() () from /home/giulia/YADE/lib/yade-bzr2567/plugins/libplugins.so (gdb) thread apply bt full / but I don't have anything after that.. I'm completely lost Excellent! Had you run with --debug, you would get backtrace, but this is good enough already! I think I fixed it in the latest revision (2573). Do bzr up and re-compile, it should work. In the unexpected case that it does not, run again in the debugger and inside (gdb) run yade with --debug (with or without -x, that does not make much difference). Explanation: since there is only one int division in OpenMPAccumulator constructor (by the constant CLS, cache line size, hardware-defined property of the CPU), it is apparently CLS that is not assigned correctly by sysconf(_SC_LEVEL1_DCACHE_LINESIZE) for your processor: it should be something like 32, 64, 128 but in your case it gives zero -- I guess that your processor model is too new for the system lib to know it (ubuntu 9.10 you said, right?). I added a check for zero value there, in which case 64 will be used as fallback. Cheers, Vaclav ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
[Yade-dev] New Material and new contact law
Hi Guys! I have to implement a simple contact law which considers normal tensile force only but elasto-plastic behaviour (steel wire). Once the connection breaks there is no more interaction. Any idea if there is already something similar in the code? Any suggestion how to start? I was thinking to create a new material ElPlastMat. Makes it sense or not? I am still not really familiar with the code. So I appreciate any kind of help. Thanks Klaus ___ Mailing list: https://launchpad.net/~yade-dev Post to : yade-dev@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-dev More help : https://help.launchpad.net/ListHelp
[Yade-dev] [Branch ~yade-dev/yade/trunk] Rev 2574: 1. Changes from 0.60 (debian packaging).
revno: 2574
committer: Anton Gladky gladky.an...@gmail.com
branch nick: trunk
timestamp: Fri 2010-11-26 08:42:42 +0100
message:
1. Changes from 0.60 (debian packaging).
removed:
debian/yade-dbg.menu-template
added:
debian/yade.desktop-template
modified:
debian/rules
debian/yade.menu-template
debian/yade.postinst-template
scripts/debian-prep
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=== modified file 'debian/rules'
--- debian/rules 2010-10-16 18:31:17 +
+++ debian/rules 2010-11-26 07:42:42 +
@@ -51,7 +51,7 @@
# remove the profile, if existing, to have clean config
rm -f scons.profile-deb
# the last argument specified that we only want files in lib installed -- common files (the executable) are already in the optimized package
- NO_SCONS_GET_RECENT= scons profile=deb buildPrefix=debian runtimePREFIX=/usr version=${VERSION} brief=0 chunkSize=1 jobs=1 features=vtk,gts,opengl,openmp,qt4 PREFIX=debian/yade${_VERSION}-dbg/usr variant='' optimize=0 march= debug=1 CPPPATH=/usr/include/vtk-5.0:/usr/include/vtk-5.2:/usr/include/vtk-5.4:/usr/include/eigen2 QT4DIR=/usr/share/qt4 debian/yade${_VERSION}-dbg/usr/lib
+ NO_SCONS_GET_RECENT= scons profile=deb buildPrefix=debian runtimePREFIX=/usr version=${VERSION} brief=0 chunkSize=5 jobs=1 features=vtk,gts,opengl,qt4 PREFIX=debian/yade${_VERSION}-dbg/usr variant='' optimize=0 march= debug=1 CPPPATH=/usr/include/vtk-5.0:/usr/include/vtk-5.2:/usr/include/vtk-5.4:/usr/include/eigen2 QT4DIR=/usr/share/qt4 debian/yade${_VERSION}-dbg/usr/lib
#optimized build
NO_SCONS_GET_RECENT= scons profile=deb PREFIX=debian/yade${_VERSION}/usr variant='' optimize=1 debug=0
#install platform-independent files (docs, scripts, examples)
@@ -59,7 +59,11 @@
cp -r examples scripts debian/yade${_VERSION}/usr/share/doc/yade${_VERSION}
# copy pixmap files in relevant directories
mkdir -p debian/yade${_VERSION}/usr/share/pixmaps
- cp debian/*.xpm debian/yade${_VERSION}/usr/share/pixmaps
+ mkdir -p debian/yade${_VERSION}/usr/share/applications
+ cp debian/yade16x16.xpm debian/yade${_VERSION}/usr/share/pixmaps/yade${_VERSION}_16x16.xpm
+ cp debian/yade32x32.xpm debian/yade${_VERSION}/usr/share/pixmaps/yade${_VERSION}_32x32.xpm
+ cp debian/yade${_VERSION}.desktop debian/yade${_VERSION}/usr/share/applications/
+ dh_installmenu
# UGLY! generate sphinx docs only if python-sphinx is installed (distinguishes distributions which should build it or not as per debian/control-template build-deps)
if dpkg-query -W python-sphinx; then cd doc/sphinx; PYTHONPATH=. YADE_PREFIX=../../debian/yade${_VERSION}/usr/ ../../debian/yade${_VERSION}/usr/bin/yade${_VERSION} yadeSphinx.py; cd _build/latex; xelatex Yade.tex; xelatex Yade.tex; xelatex Yade.tex; cd ../..; mkdir -p ../../debian/yade${_VERSION}-doc/usr/share/doc/yade${_VERSION}; cp -r _build/html _build/latex/Yade.pdf ../../debian/yade${_VERSION}-doc/usr/share/doc/yade${_VERSION}; else echo Not building HTML documentation, since the python-sphinx package is not installed; fi
@@ -75,7 +79,7 @@
YADE_PREFIX=debian/yade${_VERSION}-dbg/usr debian/yade${_VERSION}/usr/bin/yade${_VERSION} --debug --test
# Build architecture-independent files here.
-binary-indep: build install
+binary-indep: build install
# We have nothing to do by default.
# Build architecture-dependent files here.
@@ -87,7 +91,6 @@
dh_installdocs
dh_installexamples
# dh_install
- dh_installmenu
# dh_installdebconf
# dh_installlogrotate
# dh_installemacsen
=== removed file 'debian/yade-dbg.menu-template'
--- debian/yade-dbg.menu-template 2010-10-16 18:31:17 +
+++ debian/yade-dbg.menu-template 1970-01-01 00:00:00 +
@@ -1,9 +0,0 @@
-?package(y...@_version@):\
- needs=X11\
- section=Applications/Science/Physics\
- title=Yade (@SNAPSHOT@ @VERSION@)\
- command=x-terminal-emulator -T 'Yade @SNAPSHOT@ @VERSION@ (debug)' -x /usr/bin/y...@_version@ -- debug\
- icon=/usr/share/pixmaps/yade32x32.xpm\
- icon16x16=/usr/share/pixmaps/yade16x16.xpm\
- icon32x32=/usr/share/pixmaps/yade32x32.xpm
-
=== added file 'debian/yade.desktop-template'
--- debian/yade.desktop-template 1970-01-01 00:00:00 +
+++ debian/yade.desktop-template 2010-11-26 07:42:42 +
@@ -0,0 +1,8 @@
+[Desktop Entry]
+Type=Application
+Name=Yade @SNAPSHOT@ @VERSION@
+GenericName=Yade
+Exec=x-terminal-emulator -T 'Yade @SNAPSHOT@ @VERSION@' -x /usr/bin/y...@_version@
+Icon=/usr/share/pixmaps/y...@_version@_32x32.xpm
+Terminal=true
+Categories=Education;Physics;Science;
=== modified file 'debian/yade.menu-template'
--- debian/yade.menu-template 2010-10-16 18:31:17 +
+++ debian/yade.menu-template 2010-11-26 07:42:42 +
@@ -3,7 +3,7 @@
section=Applications/Science/Physics\
title=Yade (@SNAPSHOT@ @VERSION@)\
