Re: [Yade-users] [Question #652297]: Feng Chen's Yade-OpenFoam coupling model.
Question #652297 on Yade changed: https://answers.launchpad.net/yade/+question/652297 Feng Chen proposed the following answer: Hi, Ed Carlos Alves Rocha: The YADE-OpenFOAM example was posted around year 2009-2010 based on YADE-0.11.1 which is a very old version and although some python features were added to YADE, python was not supported during that time. Due to personal schedule I was not able to keep that version up to date with the yade main branch. Basically, to reproduce that example, you will need to use yade-0.11.1 and OpenFOAM-1.4, although I believe you can still get these old versions, it might be a bit difficult to get all things running (however I can still help if you have specific errors). A newer update for DEM-OpenFOAM is at https://launchpad.net/esysfoam, it was not using YADE but ESyS-Paticle as the DEM simulator, there is also build instructions posted on that site, basically repeating the same seepage/consolidation problem which might be easier to reproduce. Still, the same issue, I am not able to keep the versions up to date, so try to find those old versions of the code (ESyS-Particle-win and OpenFOAM-1.5) and not the latest ones. I am not sure if this is a good place to post ESyS-particle related questions but I am still able to answer questions related to that. Note that I might not be able to respond you very promptly, however if you need further assistance, please let me know. Regards, Feng Chen -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #294790]: YADE-1.20.0 compiled with Intel Compiler
Question #294790 on Yade changed: https://answers.launchpad.net/yade/+question/294790 Status: Answered => Open Feng Chen is still having a problem: Hi, Anton: The purpose of using the intel compiler is that I intended to use the Xeon Phi co-processor which might be able to have some speedup on openmp (shared memory model) enabled codes (which I think YADE should be a good candidate), in order to use it the first step is to compile with the intel's compiler. Currently gcc does not have support for Knights Corner vector instructions therefore should not be used. Is it possible to compile part of yade and run some benchmark problems (which was true many years ago^_^) without the python interface (the benchmark/optimization using Xeon Phi will not need python)? Thanks Feng -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #294790]: YADE-1.20.0 compiled with Intel Compiler
Question #294790 on Yade changed: https://answers.launchpad.net/yade/+question/294790 Status: Answered => Open Feng Chen is still having a problem: Hi, Anton, thanks for your quick reply, I attached here the debug info for the run, it seems quite long, do you have any idea which part went wrong? [fchen14@host003 bin]$ ./yade-1.20.0 >err.log 2>&1 Segmentation fault below is the err.log: --- Welcome to Yade 1.20.0 DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.hpp:108 Omega: Constructing Omega. DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:212 loadPlugins: Loading plugin /project/fchen14/yade/install/lib64/yade-1.20.0/libyade.so DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:136 buildDynlibDatabase: called with 234 plugins. DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin AxialGravityEngine DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin BicyclePedalEngine DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_Box_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_ChainedCylinder_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_Cylinder_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_Facet_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_GridConnection_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_Sphere_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_Tetra_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bo1_Wall_Aabb DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Body DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Bound DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin BoundDispatcher DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin BoundFunctor DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin BoundaryController DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Box DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin BoxFactory DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin BubbleMat DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin BubblePhys DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CapillaryPhys DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CapillaryStressRecorder DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CapillaryTriaxialTest DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Cell DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CentralGravityEngine DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin ChCylGeom6D DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin ChainedCylinder DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin ChainedState DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CircularFactory DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Clump DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CohFrictMat DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CohFrictPhys DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CohesiveFrictionalContactLaw DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CohesiveTriaxialTest DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin Collider DEBUG /project/fchen14/yade/trunk-1.20.0/core/Omega.cpp:142 buildDynlibDatabase: Factoring plugin CombinedKinematicEngine DEBUG /project/fchen14/yade/trun
[Yade-users] [Question #294790]: YADE-1.20.0 compiled with Intel Compiler
New question #294790 on Yade:
https://answers.launchpad.net/yade/+question/294790
Hi, All:
I am now trying to use YADE-1.20.0 on a cluster (Redhat Enterprise 6) compiled
with Intel Compiler 15.0.0, I made some attempt yesterday and was successful in
compiling YADE with the following cmake configure and make, I compiled loki,
boost 1.54 (1.55 has a problem with shard_ptr), eigen and minieigen using the
same intel compiler,
#!/bin/bash
export CC=icc
export CXX=icpc
export BSTTARGET=/project/fchen14/yade/boost/boost_1_54_0/install/
cmake -DCMAKE_C_COMPILER="icc" \
-DCMAKE_CXX_COMPILER="icpc" \
-DBoost_NO_BOOST_CMAKE=TRUE \
-DBoost_NO_SYSTEM_PATHS=TRUE \
-DBOOST_ROOT:PATHNAME=$BSTTARGET \
-DBoost_LIBRARY_DIRS:FILEPATH=${BSTTARGET}/lib \
-DBoost_INCLUDE_DIRS=${BSTTARGET}/include \
-DENABLE_GTS=OFF \
-DENABLE_GL2PS=OFF -DENABLE_GTS=OFF \
-DPY_minieigen=/project/fchen14/yade/eigen/minieigen-0.5.3/install/ \
-DEIGEN3_INCLUDE_DIR=/project/fchen14/yade/eigen/eigen-3.2.8/install/include/eigen3
\
-DLOKI_INCLUDE_DIR=/project/fchen14/yade/loki/loki-0.1.7/install/include \
-DLOKI_LIBRARY=/project/fchen14/yade/loki/loki-0.1.7/install/lib \
-DCMAKE_INSTALL_PREFIX=../install \
../trunk-1.20.0/ #/project/fchen14/yade/loki/loki-0.1.7/install/include
the libyade.so was generated successfully, however when I tried to launch
yade-1.20.0 with the following command it resulted in a segmentation fault:
[fchen14@host001 bin]$ ./yade-1.20.0
Welcome to Yade 1.20.0
Segmentation fault
further exploring into the script ./yade-1.20.0 I located the segmentation
fault happens at the line 129 in ./yade-1.20.0
129 import yade
So I am wondering
1) does anyone have the experience of using YADE with intel compiler?
2) As this will be only using the cluster with batch job so I do not need any
GUI and use as few dependencies as possible, I just want to run a very simple
case like free fall/collision of a few thousand particles and then benchmark
the run, can I run yade without python interface? (If trying to diagnose the
segmentation fault with python interface will take a long time?
Thanks for any suggestions!
Feng Chen
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Re: [Yade-users] [Question #256106]: Coupling YADE with CFD
Question #256106 on Yade changed: https://answers.launchpad.net/yade/+question/256106 Feng Chen proposed the following answer: Hi, Shailesh YADE-OpenFOAM was not updated since 2011, I also started ESyS-Foam project at https://launchpad.net/esysfoam, however due to personal schedule I do not have much time updating either project. There is no thermal analysis currently and you will need to adapt a OpenFOAM thermal analysis solver into it. The source code and examples are still on the webpage and should be a good reference for your own work. Feel free to ask if you have more questions. Thank you, Feng Chen -- You received this question notification because you are a member of yade-users, which is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #165417]: Fluid Simulation
Question #165417 on Yade changed: https://answers.launchpad.net/yade/+question/165417 Status: Open = Answered Feng Chen proposed the following answer: Hi, Daniela: I have initiated an ESyS-OpenFOAM coupling project since the beginning of this year, due to personal schedule it was not actively developed since March, recently I got quite a lot personal emails regarding this topic and code. Although currently I am still facing some convergence and numerical instabilities, I am planning to release it pretty soon, I have created a project called ESyS-FOAM and will soon release the code. Verification is a difficult thing and might need more people to join this work, also discuss the road map. YADE-OpenFOAM coupling probably can be re-wrote in a similar way, once I upload the files, you are very welcome to use, test and contribute this, as far as I know, OpenFOAM 2.0 has already contained a DEM part, but I do not know much about it. Feng -- You received this question notification because you are a member of yade-users, which is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #165417]: Fluid Simulation
Question #165417 on Yade changed: https://answers.launchpad.net/yade/+question/165417 Feng Chen proposed the following answer: Hi, Bruno: That reference is from PFC2D's (v3.1) manual Fixed coarse-grid fluid scheme in PFC2D, I remember it is in the second example of fluidized bed. I have not done in-depth research about this, but my experience is your dn/dt and d(rho*n)/dt (n is the porosity, rho is fluid density) must be small (but don't know how small it should be) compared to other terms, or your solution for N-S equation will soon fail, if omit your porosity derivative in your N-S equation, everything will be happy... feng -- You received this question notification because you are a member of yade-users, which is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #165417]: Fluid Simulation
Question #165417 on Yade changed: https://answers.launchpad.net/yade/+question/165417 Feng Chen proposed the following answer: My 2 cents: There are 3 things to parallel in this coupled problem: 1. Parallel in DEM itself (discrete particle domain decomposition, OpenMP, MPI etc) 2. Parallel in CFD (similar to above, continuum domain decomposition, OpenFOAM is mature on this) 3. Parallel in DEM-CFD (we are working on this, almost done) Feng -- You received this question notification because you are a member of yade-users, which is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
[Yade-users] Viscous damping code for YADE
Hi, all: I am about to release the viscous damping code for YADE SVN, this damping is different from the non-viscous damping and the damping effect only exist when particles are in contact, the basic equations are similar to: http://en.wikipedia.org/wiki/Damping In some conditions, this is more realistic than the non-viscous damping. Two verification problems are listed in: Feng Chen, Eric. C. Drumm, and Georges Guiochon „Prediction/Verification of Particle Motion in One Dimension with the Discrete-Element Method”. International Journal of Geomechanics, ASCE, Volume 7, Issue 5, pp. 344-352 2007 One thing is I only tested it with YADE-0.11.1, it might take some time to compile with the latest SVN, hope this would be helpful. Merry Christmas! Best regards, Feng Chen Graduate Student Department of Civil and Environmental Engineering 223 Perkins Hall University of Tennessee, Knoxville, 37996 http://fchen3.googlepages.com/home -- This message was sent by Launchpad via the Contact user/team link on your profile page. For more information see https://help.launchpad.net/YourAccount/ContactingPeople ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
