Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed: https://answers.launchpad.net/yade/+question/679428 Status: Open => Answered Janek Kozicki proposed the following answer: Try cleaning thread libraries the same way you did this with qt libraries? I have done some much testing of yade last month, that I am sure it must work. Maybe try inside a clear install of linux in chroot or virtualbox? Just to find out if it can work for you. In one case yade wasn't working for one student because he defined some special PATHs in ~/.bashrc to get to work some other unrelated custom software installed from .tar.gz (not from the package manager). We discovered this after simple `adduser test` on his laptop. And yade worked on that user test, but didn't work in his regular account. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed: https://answers.launchpad.net/yade/+question/679428 Status: Answered => Open Luc OGER is still having a problem: I have erased all links to qt4 and compile libQGLViewer for qt5 and qmake-qt5 The program still crashes at the same "view 3D" choice the last line is : /tmp/yade-Debt3H/tmp-0:3: Error in sourced command file: Invalid thread ID: info (gdb) i don't even understand the term info for the thread ID ??? if I ask for the "info thread" i got this: Id Target Id Frame * 1Thread 0x7f0ffc4084c0 (LWP 30222) "yade-2019-04-26" 0x7f0ffb8d1dd7 in waitpid () from /lib64/libc.so.6 2Thread 0x7f0fd827b700 (LWP 30227) "WorkerThread"0x7f0ffbbd6246 in do_futex_wait.constprop () from /lib64/libpthread.so.0 3Thread 0x7f0fd7a7a700 (LWP 30228) "WorkerThread"0x7f0ffbbd6246 in do_futex_wait.constprop () from /lib64/libpthread.so.0 4Thread 0x7f0fc4b1a700 (LWP 30229) "yade-2019-04-26" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 5Thread 0x7f0fbcd1c700 (LWP 30230) "llvmpipe-0" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 6Thread 0x7f0fbc51b700 (LWP 30231) "llvmpipe-1" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 7Thread 0x7f0fbbd1a700 (LWP 30232) "llvmpipe-2" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 8Thread 0x7f0fbb519700 (LWP 30233) "llvmpipe-3" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 9Thread 0x7f0fbad18700 (LWP 30234) "llvmpipe-4" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 10 Thread 0x7f0fba517700 (LWP 30235) "llvmpipe-5" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 11 Thread 0x7f0fb9d16700 (LWP 30236) "llvmpipe-6" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 12 Thread 0x7f0fb9515700 (LWP 30237) "llvmpipe-7" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 13 Thread 0x7f0f9a303700 (LWP 30435) "QXcbEventReader" 0x7f0ffb8fa0bb in poll () from /lib64/libc.so.6 14 Thread 0x7f0f98bf1700 (LWP 30436) "yade-2019-04-26" 0x7f0ffbbd6246 in do_futex_wait.constprop () from /lib64/libpthread.so.0 15 Thread 0x7f0f87bf4700 (LWP 30437) "QDBusConnection" 0x7f0ffb8fa0bb in poll () from /lib64/libc.so.6 16 Thread 0x7f0f8733a700 (LWP 30438) "llvmpipe-0" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 17 Thread 0x7f0f86b39700 (LWP 30439) "llvmpipe-1" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 18 Thread 0x7f0f86338700 (LWP 30440) "llvmpipe-2" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 19 Thread 0x7f0f85b37700 (LWP 30441) "llvmpipe-3" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 20 Thread 0x7f0f85336700 (LWP 30442) "llvmpipe-4" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 21 Thread 0x7f0f84b35700 (LWP 30443) "llvmpipe-5" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 22 Thread 0x7f0f6700 (LWP 30444) "llvmpipe-6" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 23 Thread 0x7f0f6f7fe700 (LWP 30445) "llvmpipe-7" 0x7f0ffbbd38ad in pthread_cond_wait@@GLIBC_2.3.2 () from /lib64/libpthread.so.0 24 Thread 0x7f0f6effd700 (LWP 30452) "yade-2019-04-26" 0x7f0ffb8fbf33 in select () from /lib64/libc.so.6 this looks to be a problem for a pthread but I have no idea where to look inside ou avoid this? -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed: https://answers.launchpad.net/yade/+question/679428 Janek Kozicki proposed the following answer: I meant that maybe there is some conflict between qt versions. Maybe you have installed both qt4 and qt5. And yade is compiled with one, but when buinary is executed it tries to use the other. Try uninstalling all qt libraries, then installing only the smallest necessary subset. Assuming you do not have some stray *.so file in lib directory -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed:
https://answers.launchpad.net/yade/+question/679428
Status: Open => Answered
Janek Kozicki proposed the following answer:
I suspect qt. See on installation page the „
Warning
To provide Qt4->Qt5 migration one needs.”
On 19 Apr 2019, 14:43 +0200, Luc OGER ,
wrote:
> Question #679428 on Yade changed:
> https://answers.launchpad.net/yade/+question/679428
>
> Status: Answered => Open
>
> Luc OGER is still having a problem:
> new research for solving my problem: here the debug answer with latest
> verison 15/04/2019 with qt5 and python 2.7 on Opnsuse 15.0
>
> DEBUG /home/oger/Yade/trunk/core/Omega.cpp:140 buildDynlibDatabase: Factoring
> plugin ZECollider
> DEBUG /home/oger/Yade/trunk/pkg/dem/FlatGridCollider.cpp:44 initIndices:
> sphereIdx=1
> DEBUG /home/oger/Yade/trunk/pkg/dem/FlatGridCollider.cpp:44 initIndices:
> sphereIdx=1
> TCP python prompt on localhost:9000, auth cookie `kecyds'
> XMLRPC info provider on http://localhost:21000
> DEBUG /home/oger/Yade/trunk/pkg/common/OpenGLRenderer.cpp:66 initgl:
> (re)initializing GL for gldraw methods.
>
> qt5ct: using qt5ct plugin
> Running script 01-bouncing-sphere.py
> INFO /home/oger/Yade/trunk/core/Omega.cpp:265 saveSimulation: Saving file
> :memory:
> [[ ^L clears screen, ^U kills line. F12 controller, F11 3D view (press "h" in
> 3D view for help), F10 both, F9 generator, F8 plot. ]]
>
> In [1]: QXcbConnection: XCB error: 145 (Unknown), sequence: 171, resource id:
> 0, major code: 139 (Unknown), minor code: 20
> inotify_add_watch("/home/oger/.config/qt5ct") failed: "No such file or
> directory"
>
>
> In [2]: INFO /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:350 centerScene:
> Select with shift, press 'm' to move.
> DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:359 centerScene: scene's
> bound not yet calculated or has zero or nan dimension(s), attempt get that
> from bodies' positions.
> DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:370 centerScene: Got scene
> box min=0 0 0 and max=0 0 2
> DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:374 centerScene: Scene
> center=0 0 1, halfSize=0 0 1, radius=1
> INFO /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:350 centerScene: Select with
> shift, press 'm' to move.
> DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:359 centerScene: scene's
> bound not yet calculated or has zero or nan dimension(s), attempt get that
> from bodies' positions.
> DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:370 centerScene: Got scene
> box min=0 0 0 and max=0 0 2
> DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:374 centerScene: Scene
> center=0 0 1, halfSize=0 0 1, radius=1
> SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-YVDdwH/tmp-0'
> GNU gdb (GDB; openSUSE Leap 15.0) 8.2
> Copyright (C) 2018 Free Software Foundation, Inc.
> License GPLv3+: GNU GPL version 3 or later
> This is free software: you are free to change and redistribute it.
> There is NO WARRANTY, to the extent permitted by law.
> Type "show copying" and "show warranty" for details.
> This GDB was configured as "x86_64-suse-linux".
> Type "show configuration" for configuration details.
> For bug reporting instructions, please see:
>
Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed:
https://answers.launchpad.net/yade/+question/679428
Status: Answered => Open
Luc OGER is still having a problem:
new research for solving my problem: here the debug answer with latest
verison 15/04/2019 with qt5 and python 2.7 on Opnsuse 15.0
DEBUG /home/oger/Yade/trunk/core/Omega.cpp:140 buildDynlibDatabase: Factoring
plugin ZECollider
DEBUG /home/oger/Yade/trunk/pkg/dem/FlatGridCollider.cpp:44 initIndices:
sphereIdx=1
DEBUG /home/oger/Yade/trunk/pkg/dem/FlatGridCollider.cpp:44 initIndices:
sphereIdx=1
TCP python prompt on localhost:9000, auth cookie `kecyds'
XMLRPC info provider on http://localhost:21000
DEBUG /home/oger/Yade/trunk/pkg/common/OpenGLRenderer.cpp:66 initgl:
(re)initializing GL for gldraw methods.
qt5ct: using qt5ct plugin
Running script 01-bouncing-sphere.py
INFO /home/oger/Yade/trunk/core/Omega.cpp:265 saveSimulation: Saving file
:memory:
[[ ^L clears screen, ^U kills line. F12 controller, F11 3D view (press "h" in
3D view for help), F10 both, F9 generator, F8 plot. ]]
In [1]: QXcbConnection: XCB error: 145 (Unknown), sequence: 171, resource id:
0, major code: 139 (Unknown), minor code: 20
inotify_add_watch("/home/oger/.config/qt5ct") failed: "No such file or
directory"
In [2]: INFO /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:350 centerScene:
Select with shift, press 'm' to move.
DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:359 centerScene: scene's bound
not yet calculated or has zero or nan dimension(s), attempt get that from
bodies' positions.
DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:370 centerScene: Got scene box
min=0 0 0 and max=0 0 2
DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:374 centerScene: Scene
center=0 0 1, halfSize=0 0 1, radius=1
INFO /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:350 centerScene: Select with
shift, press 'm' to move.
DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:359 centerScene: scene's bound
not yet calculated or has zero or nan dimension(s), attempt get that from
bodies' positions.
DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:370 centerScene: Got scene box
min=0 0 0 and max=0 0 2
DEBUG /home/oger/Yade/trunk/gui/qt5/GLViewer.cpp:374 centerScene: Scene
center=0 0 1, halfSize=0 0 1, radius=1
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-YVDdwH/tmp-0'
GNU gdb (GDB; openSUSE Leap 15.0) 8.2
Copyright (C) 2018 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Type "show copying" and "show warranty" for details.
This GDB was configured as "x86_64-suse-linux".
Type "show configuration" for configuration details.
For bug reporting instructions, please see:
Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed: https://answers.launchpad.net/yade/+question/679428 Status: Open => Answered Jérôme Duriez proposed the following answer: Hello, Regarding "get back a specific old daily git package (if possible?)" I would say this is what version control systems are made for ;-) Use either "git log" in your terminal, or browse https://github.com/yade/trunk/commits/master (for history before January 2019) to identify which commit (its id, eg 6387d336023fd836fd3145505ae1a59c9f3670f2 but you do not need to type the whole thing) you want to get back Then type something like git cherry-pick theDesiredCommitId # maybe with -n command depending on what you want, see man git cherry-pick or https://git-scm.com/docs/git-cherry-pick How smoothly it will work may depend whether you modified the sources. If you did modify them and have private personal changes that are nowhere else than on your computer, maybe save them elsewhere before experimenting git ! Jérôme -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed: https://answers.launchpad.net/yade/+question/679428 Status: Answered => Open Luc OGER is still having a problem: Dear Bruno, I agreed that the missing debug info is due to nissing debug package in the OS but it is just a list of warning linked to the gdb stop due to an error during the visualization process. My problem is to try to discover where to look to find the problem : yade in batch mode is working well; ! I have tried to compile previous versionbut 2018-02a and b cannot be compiled with my opensuse 15.0 as the CGAL package has a different number of argument for some functions.. the 2019.01 generates the same crash as the daily one I know that november versionswere working well but I don't know how to get back a specific old daily git package (if possible?) to try again and check when the development starts to crash. Luc -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #679428]: unable to display sphere with latest version
Question #679428 on Yade changed: https://answers.launchpad.net/yade/+question/679428 Status: Open => Answered Bruno Chareyre proposed the following answer: Hi, We are not actively testing builds on openSuse. The error message "Missing separate debuginfo for.." is not very specific and it apparently appears in ultiple forums, usually related to opensuse and various softwares. It would be useful to know which revision made this problem occur. Are you 100% sure that another version compiled the same way on the same system will work (then which one)? Bruno -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
[Yade-users] [Question #679428]: unable to display sphere with latest version
New question #679428 on Yade: https://answers.launchpad.net/yade/+question/679428 i am using the latest git version of Yade and compiled it on Opensuse 15.0 without any error but alot of warnings...as ususal! but recently I got aproblem for having a display of the spheres here the final lines in the debug mode when I run yade 01-bopuncing case and prss display 3D: Missing separate debuginfo for /usr/lib64/kde4/plugins/imageformats/kimg_xview.so Try: zypper install -C "debuginfo(build-id)=a85fc879980a1489d22bab033684de284a79320c" 0x7f8380cf2d97 in waitpid () from /lib64/libc.so.6 /tmp/yade-q0wBU7/tmp-0:3: Error in sourced command file: Invalid thread ID: info I did not catched where I have to look to solve this new problem? Thanks in advance for your help Luc here the cmake log of the yade generation: isce-suse:/home/Yade/build # cmake -DUSE_QT5=OFF -DPYTHON_EXECUTABLE=/usr/bin/python2 -DCMAKE_VERBOSE_MAKEFILE=ON -DLocalBoost=1.166 -Wno-dev -Wno-deprecated -Wno-int-in-bool-context -DENABLE_LBMFLOW=OFF -DENABLE_TWOPHASEFLOW=OFF -DENABLE_PFVFLOW=OFF -DQGLVIEWER_INCLUDE_DIR=/usr/local/include/QGLViewer -DLocalBoost=1.66.0 -DDEBUG=ON ../trunk -- The C compiler identification is GNU 7.3.1 -- The CXX compiler identification is GNU 7.3.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/bin/python2 (found version "2.7.14") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found version "4.8.7") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Version is set to 2019-03-14.git-8b073f5 -- Found OpenGL: /usr/lib64/libOpenGL.so -- GTS using gts-config /usr/bin/gts-config -- Using GTS from /usr -- Found GL2PS: /usr/lib64/libgl2ps.so -- Found CGAL: /usr/include, /usr/lib64/libCGAL.so -- Found NumPy: version "1.14.0" /usr/lib64/python2.7/site-packages/numpy/core/include -- Found Loki: /usr/include -- GCC Version >= 4.8. Adding -ftrack-macro-expansion=0 -- GCC Version >= 4.8. Adding -save-temps -- GCC Version >= 4.9. Adding -fstack-protector-strong -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.66.0 -- Found the following Boost libraries: -- python -- thread -- filesystem -- iostreams -- regex -- serialization -- system -- date_time -- chrono -- atomic -- Boost_VERSION: 106600 -- Boost_LIB_VERSION: 1_66 -- Boost_INCLUDE_DIRS: /usr/include -- Boost_LIBRARIES: /usr/lib64/libboost_python.so/usr/lib64/libboost_thread.so/usr/lib64/libboost_filesystem.so/usr/lib64/libboost_iostreams.so/usr/lib64/libboost_regex.so/usr/lib64/libboost_serialization.so/usr/lib64/libboost_system.so/usr/lib64/libboost_date_time.so/usr/lib64/libboost_chrono.so/usr/lib64/libboost_atomic.so -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.6") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.14") -- Found Eigen3, version: 3.3.4 -- Disable vectorization -- Found VTK -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP -- GTS using gts-config /usr/bin/gts-config -- Using GTS from /usr -- Checking for one of the modules 'glib-2.0' -- Found GLib2: glib-2.0 /usr/include/glib-2.0;/usr/lib64/glib-2.0/include -- Looking for include file glib/gregex.h -- Looking for include file glib/gregex.h - not found -- Found GTS -- Found GLUT: /usr/lib64/libglut.so -- USE QT4 -- Found QGLVIEWER-qt4: /usr/local/include/QGLViewer -- Found Qt4: /usr/bin/qmake (found version "4.8.7") -- Found GUI-LIBS -- GMP libs: /usr/lib64/libgmp.so /usr/lib64/libgmpxx.so -- Found GMP: /usr/include -- GMP libs: /usr/lib64/libgmp.so /usr/lib64/libgmpxx.so -- Found CGAL -- SuiteSparse version 4.5.5
