[Zope-dev] ReiserStorage 0.01 alpha

2000-06-06 Thread Petru Paler

  Hello all,

   Attached you can find the code for a preliminary ZODB storage manager
which is designed to take adventage of the reiserfs filesystem
(http://devlinux.com/namesys). While it is usable on other filesystems
too, the performance will decrease as the number of objects in your
database increases.
   Comments:

1. This is as alpha as it can be. While it is usable to do some testing on
a spare Zope, you must be insane to even try to use this on a production
system.
2. A generic DirectoryStorage is comming soon, with the diference being
splitting files by directory (and, of course, being slower than the
reiserfs version).
3. As you can see in the source, I/O errors in critical points can corrupt
the storage.
4. It currently does not support versioning and undo. I'm working first on
getting it stable and fast, and then add these features.

Feedback is not only welcome, but wanted :)

-Petru


##
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# To-do list:
# Critical:
#- Most I/O operations are not

[Zope-dev] Request for comments: Directory storage

2000-06-07 Thread Petru Paler

  Hello all,

   You probably saw my yesterday post with the first alpha of
ReiserStorage. One of the questions that people tend to ask about it is
wheter they can use it without reiserfs.
   There are two problems with not using reiserfs:

1. ReiserStorage (now renamed to DirectoryStorage) stores each object in a
separate file and *all* the files in a single directory. This was done in
order to let the filesystem what it was meant to do: store and retrieve
files quickly. While reiserfs is *extremely* good at this (it uses a btree
to store directory entries), most other filesystems do linear searches
when finding a file so performance is very bad when you have many files in
a single directory.
   This problem can be solved by splitting files into multiple directories
when not using reiserfs. This would add a little overhead but it is
tolerable.

2. Waste of space. Typical block-allocation filesystems like ext2 and FAT
will waste alot of space in the usage pattern of DirectoryStorage.
ReiserFS packs small files together in the btree, so it solves the
problem, but I have no ideea how this could be fixed easyly on the other
fs's.

Comments ? Suggestions ?

PS: a new DirectoryStorage release will be done today, with bugfixes and
new features.

-Petru



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Re: [Zope-dev] Request for comments: Directory storage

2000-06-07 Thread Petru Paler

> This is the embodiment of my MutliFileStorage thingy on Jim's ZODB Wiki.  I

   Oops, didn't saw the ZODB Wiki until now :)

> droped it (Never picked it up) when Mountable Storage was announced.  I'll
> create a ReierFS partition some time this week and try it out.  Excellent!

   Glad you find it interesting :) One thing I should mention is that you
should use the rupasov hash option on the partition. teahash will also
work, but rupasov hash is designed for consecutive file names and
DirectoryStorage specifically exploits that feature.

-Petru



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Re: [Zope-dev] Request for comments: Directory storage

2000-06-07 Thread Petru Paler

> >Glad you find it interesting :) 
> 
> Very.  I think the line between FileSYstem and Database gets more blurred
> every day.

That's what Hans Reiser says all the time :)

> Thanks for the heads up.  I have to patch my kernel up to 2.2.11 first,
> then I'll be recompiling, then creating.  It may take me a bit.  But I sure
> as heck want to try it. Thanks again.

2.2.11 ? You should really use the latest kernel (2.2.15 at this time,
2.2.16 due to be out soon).

-Petru


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Re: [Zope-dev] Request for comments: Directory storage

2000-06-08 Thread Petru Paler

> From my naive understanding, would this help with the problem ZODB has
> with regard to folders with many objects? Would a person who is using
> DirectoryStorage not necessarily be required to partition their objects
> into an artificially derived hierarchical directory structure?


   No, these are unrelated. DirectoryStorage is a storage for ZODB and
doesn't really care about what the application (Zope in this case) stores
in it.

> In other words can it be a possible solution to
> http://www.zope.org/Wikis/zope-dev/ReallyBigFolders ?
> 
> Ooo, if so any idea on ETA?

I don't know. Michel Pelletier has released an alpha BTreeFolder, but
I didn't had time to look at it..

-Petru


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Re: [Zope-dev] Request for comments: Directory storage

2000-06-08 Thread Petru Paler

> >  Hello all,
> >
> >   You probably saw my yesterday post with the first alpha of
> >ReiserStorage.
> 
> Woohoo!
> 
> Id like to try this on NT with NTFS too (which has similar performance
> characteristics with big directories and small files). Do you think
> this is worth a try, or does your ReiserStorage use other
> Unix-specific tricks?

The version I sent to the list assumes a '/' directory separator. I'm
releasing a fixed version (a snapshot of my working code) in a couple of
seconds.
I do think it's worth a try, but I doubt NTFS is as good as ReiserFS
:)

-Petru


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[Zope-dev] DirectoryStorage 0.03

2000-06-08 Thread Petru Paler


   Note that this version (experimentally) uses a dbm database for storing
serials. If you don't have/don't want to use gdbm, replace all occurences
of gdbm with dbhash or dumbdbm. I didn't used anydbm because it has some
strange problems with my python installation :) (but it will be fixed
soon).

Changelog:
0.03:
- don't die if posix.fsync is not available
- base class renamed to DirectoryStorage
- added directory (re)creation and locking
- added a 'magic' file
- last oid file open/close bug
- moved serials to an gdbm database

0.02:
- converted to using os.path.join

0.01:
- initial release


-Petru


# Copyright (c) 2000 Petru Paler ([EMAIL PROTECTED]) All rights reserved.


# To-do list:
# Critical:
#- Most I/O operations are not atomic. This means that I/O errors (and, for
#that matter, any exceptions occured in _finish) leave the storage in an
#undefined state
#
# Not critical:
#- Performance tuning -- add caches where apropiate
#- make sure locking is ok
#- provide directory splitting to enable use on non-reiser filesystems
#
# ... and probably many others

"""Directory storage"""

__version__ = "0.03"

from BaseStorage import BaseStorage
from lock_file import lock_file
import POSException
import os, struct, stat, operator, gdbm

try:
from posix import fsync
except:
fsync = None

def oid2str(oid):
return "%02X"*8 % struct.unpack("!8B", oid)

def rmrf(dir):
"Recursively delete dir"
for f in os.listdir(dir):
pathname = os.path.join(dir, f)
mode = os.stat(pathname)[stat.ST_MODE]
if stat.S_ISDIR(mode):
rmrf(pathname)
elif stat.S_ISREG(mode):
os.unlink(pathname)
else:
raise 'remove error', 'strange file in dir storage'
os.rmdir(dir)

MAGIC = 'Directory Storage Format v1.0'

class DirectoryStorage(BaseStorage):

def __init__(self, dirname, create=0):

if not os.path.exists(dirname):
create = 1

if os.path.exists(dirname):
try:
f = open(os.path.join(dirname, 'lock'), 'r+')
except:
f = open(os.path.join(dirname, 'lock'), 'w+')
lock_file(f)
try:
f.write(str(os.getpid()))
f.flush()
except:
pass
self._lock_file = f

BaseStorage.__init__(self, dirname)

self._oid_dir = os.path.join(dirname, 'oid')
self._tindex = []
self._oid = '\0\0\0\0\0\0\0\0'

if create:
if os.path.exists(dirname):
# prune the old dir
rmrf(dirname)

os.mkdir(dirname)
os.mkdir(os.path.join(dirname, 'oid'))
f = open(os.path.join(dirname, 'lock'), 'w+')
lock_file(f)
try:
f.write(str(os.getpid()))
f.flush()
except:
pass
self._lock_file = f
f = open(os.path.join(dirname, 'magic'), 'w+')
f.write(MAGIC)
f.close()

self._sindex = gdbm.open(os.path.join(dirname, 'serial'), 'n')
self.lof = open(os.path.join(dirname, 'last_oid'), 'w+')
else:
self._sindex = gdbm.open(os.path.join(dirname, 'serial'), 'w')
f = open(os.path.join(dirname, 'last_oid'), 'r+')
self._oid = f.read()
self.lof = f

def __len__(self):
return len(os.listdir(self._oid_dir))

def getSize(self):
files = os.listdir(self._oid_dir)
files = map(lambda x,d=self._oid_dir: os.path.join(d, x), files)
sizes = map(lambda x: os.stat(x)[stat.ST_SIZE], files)
return reduce(operator.add, sizes)

de

RE: [Zope-dev] Request for comments: Directory storage

2000-06-08 Thread Petru Paler

> M. I suspect NTs heavier file security checks will prove to be a
> significant disadvantage - benchmarks to follow.

   If you do benchmarks, you should do them comparing
DirectoryStorage/NTFS to DirectoryStorage/reiserfs, because (at least at
mass object creation) DirectoryStorage is slower than FileStorage (because
of the open() overhead).
   I plan on optimizing the random access on huge number of objects case.

-Petru


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RE: [Zope-dev] Request for comments: Directory storage

2000-06-08 Thread Petru Paler

> I don't have the two on comparable machines :-(
> 
> Do you have a standard benchmark for comparing the relative performance
> FileStorage/DirectoryStorage on reiser fs?

Not yet. I have been using a script which just creates/retrieves
objects from the ODB but I guess something more serious is needed. Will
write :)

-Petru


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Re: [Zope-dev] Request for comments: Directory storage

2000-06-09 Thread Petru Paler

> I'd love some sort of benchmarking tool for this (and posibly other 
> Storages). I guess the best way would a python script that uses urllib.
> Something that would algorithmically pump up the DB to > 1GB in size
> and retrieve the URL's. Any volunteers or am I doing it in my
> copious spare time (tm)?

It would be great if you could do it, but beware that you will be
benchmarking a lot of overhead if you only plan to measure storage
performance. Why not use ZODB directly ?

> I've got a nice NetApp here to run some tests on.

What filesystem does that use ?

-Petru


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[Zope-dev] DirectoryStorage 0.04

2000-06-09 Thread Petru Paler


Changelog:

0.04:
- added missing binary flags to open() calls to make it work on NT.
- added flush() calls after file writing
- added close() method to the DirectoryStorage class

0.03:
- don't die if posix.fsync is not available
- base class renamed to DirectoryStorage
- added directory (re)creation and locking
- added a 'magic' file
- last oid file open/close bug
- moved serials to an gdbm database

0.02:
- converted to using os.path.join

0.01:
- initial release


-Petru


# Copyright (c) 2000 Petru Paler ([EMAIL PROTECTED]) All rights reserved.


# To-do list:
# Critical:
#- Most I/O operations are not atomic. This means that I/O errors (and, for
#that matter, any exceptions occured in _finish) leave the storage in an
#undefined state
#
# Not critical:
#- Performance tuning -- add caches where apropiate
#- make sure locking is ok
#- provide directory splitting to enable use on non-reiser filesystems
#
# ... and probably many others

"""Directory storage"""

__version__ = "0.04"

from BaseStorage import BaseStorage
from lock_file import lock_file
import POSException
import os, struct, stat, operator, gdbm

try:
from posix import fsync
except:
fsync = None

def oid2str(oid):
return "%02X"*8 % struct.unpack("!8B", oid)

def rmrf(dir):
"Recursively delete dir"
for f in os.listdir(dir):
pathname = os.path.join(dir, f)
mode = os.stat(pathname)[stat.ST_MODE]
if stat.S_ISDIR(mode):
rmrf(pathname)
elif stat.S_ISREG(mode):
os.unlink(pathname)
else:
raise 'remove error', 'strange file in dir storage'
os.rmdir(dir)

MAGIC = 'Directory Storage Format v1.0'

class DirectoryStorage(BaseStorage):

def __init__(self, dirname, create=0):

if not os.path.exists(dirname):
create = 1

if os.path.exists(dirname):
try:
f = open(os.path.join(dirname, 'lock'), 'r+')
except:
f = open(os.path.join(dirname, 'lock'), 'w+')
lock_file(f)
try:
f.write(str(os.getpid()))
f.flush()
except:
pass
self._lock_file = f

BaseStorage.__init__(self, dirname)

self._oid_dir = os.path.join(dirname, 'oid')
self._tindex = []
self._oid = '\0\0\0\0\0\0\0\0'

if create:
if os.path.exists(dirname):
# prune the old dir
rmrf(dirname)

os.mkdir(dirname)
os.mkdir(os.path.join(dirname, 'oid'))
f = open(os.path.join(dirname, 'lock'), 'w+')
lock_file(f)
try:
f.write(str(os.getpid()))
f.flush()
except:
pass
self._lock_file = f
f = open(os.path.join(dirname, 'magic'), 'w+')
f.write(MAGIC)
f.close()

self._sindex = gdbm.open(os.path.join(dirname, 'serial'), 'n')
self.lof = open(os.path.join(dirname, 'last_oid'), 'w+b')
else:
self._sindex = gdbm.open(os.path.join(dirname, 'serial'), 'w')
f = open(os.path.join(dirname, 'last_oid'), 'r+b')
self._oid = f.read()
self.lof = f

def __len__(self):
return len(os.listdir(self._oid_dir))

def getSize(self):
files = os.listdir(self._oid_dir)
files = map(lambda x,d=self._oid_dir: os.path.join(d, x), files)
sizes = map(lambda x: os.stat(x)[stat.ST_SIZE], files)
return reduce(operator.add, sizes)

def close(self):
self.lof.close()
self._sindex.close()
self._lock_file.close()


Re: [Zope-dev] Request for comments: Directory storage

2000-06-13 Thread Petru Paler

> > It would be great if you could do it, but beware that you will be
> > benchmarking a lot of overhead if you only plan to measure storage
> > performance. Why not use ZODB directly ?
> 
> If I talk HTTP, it measures things fully - Python's interpreter lock
> will mean a storage system written in python will benchmark better
> without having to compete with ZServer, and vice versa for storage
> systems with non-pythonic bits.

Yes, you are right.

> > What filesystem does that use ?
> 
> No idea :-) Something log based that is very fast and handles huge
> directories happily. It also appears that another member of this
> list has an EMC Symmetrix box to test on, which I believe is the next (and 
> highest) level up from a Netapp.

Mmmm... I heard that Network Appliance hired a couple of the SGI engineers
that designed XFS ?

> I've attached a prerelease alpha of zouch.py for giggles. Not even a
> command line yet, so you will need to edit some code at the bottom.
> The current settings generate about 360 directories and about 36000 files,
> and proceeds to make about 18 reads. This bloated by test ZODB
> to just over 200MB and took about 2.6 hours attacking my development Zope
> server from another host on my LAN.

Cool :)
Thanks for writing this, it will be very useful for benchmarking.

-Petru


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[Zope-dev] alpha SOAP support

2000-06-21 Thread Petru Paler

   Hi everyone,

Here's a very rough cut at adding SOAP support to Zope. It is mostly a 
shameless adaptation of the already existing XML-RPC support and it probably
has alot of problems, but it should provide a starting point. Don't expect too
much out of it for now since: 1) it was written by someone (me :) with about
two hours of previous SOAP experience and 2) it is 1:34 AM here and I wrote it
in the last hour :) Having said that, I was able to call a method inside Zope
and retrieve back the result, so I attach a diff against a current Zope CVS
checkout.
Feedback is more than welcome.

-Petru


diff -urN --exclude-from=exclude _zope-untouched/lib/python/ZPublisher/HTTPRequest.py 
soap-zope/lib/python/ZPublisher/HTTPRequest.py
--- _zope-untouched/lib/python/ZPublisher/HTTPRequest.pySat Jun 10 02:57:58 
2000
+++ soap-zope/lib/python/ZPublisher/HTTPRequest.py  Thu Jun 22 01:23:28 2000
@@ -94,6 +94,7 @@
 from Converters import get_converter
 from maybe_lock import allocate_lock
 xmlrpc=None # Placeholder for module that we'll import if we have to.
+soap=None
 
 isCGI_NAME = {
 'SERVER_SOFTWARE' : 1, 
@@ -347,13 +348,23 @@
 if (fs.headers.has_key('content-type') and
 fs.headers['content-type'] == 'text/xml' and
 method == 'POST'):
-# Ye haaa, XML-RPC!
-global xmlrpc
-if xmlrpc is None: import xmlrpc
-meth, self.args = xmlrpc.parse_input(fs.value)
-response=xmlrpc.response(response)
-other['RESPONSE']=self.response=response
-other['REQUEST_METHOD']='' # We don't want index_html!
+   if environ.has_key('HTTP_SOAPACTION'):
+   # this is a SOAP request
+   global soap
+   if soap is None:
+   import soap
+   meth, self.args = soap.parse_input(fs.value)
+   response = soap.response(response)
+   other['RESPONSE'] = self.response = response
+   other['REQUEST_METHOD'] = ''
+   else:
+   # Ye haaa, XML-RPC!
+   global xmlrpc
+   if xmlrpc is None: import xmlrpc
+   meth, self.args = xmlrpc.parse_input(fs.value)
+   response=xmlrpc.response(response)
+   other['RESPONSE']=self.response=response
+   other['REQUEST_METHOD']='' # We don't want index_html!
 else:
 self._file=fs.file
 else:
diff -urN --exclude-from=exclude _zope-untouched/lib/python/ZPublisher/soap.py 
soap-zope/lib/python/ZPublisher/soap.py
--- _zope-untouched/lib/python/ZPublisher/soap.py   Thu Jan  1 02:00:00 1970
+++ soap-zope/lib/python/ZPublisher/soap.py Thu Jun 22 01:23:12 2000
@@ -0,0 +1,116 @@
+"""SOAP support module
+
+Written by Petru Paler
+
+Based on the XML-RPC Zope support module written by Eric Kidd at UserLand 
+software, with much help from Jim Fulton at DC. 
+
+This code hooks Zope up to Fredrik Lundh's Python SOAP library.
+"""
+
+import sys
+from string import replace
+from HTTPResponse import HTTPResponse
+import soaplib
+
+def parse_input(data):
+"""Parse input data and return a method path and argument tuple
+
+The data is a string.
+"""
+method, params = soaplib.loads(data)
+# Translate '.' to '/' in meth to represent object traversal.
+method = replace(method, '.', '/')
+return method, params
+
+# See below
+#
+# def response(anHTTPResponse):
+# """Return a valid ZPublisher response object
+# 
+# Use data already gathered by the existing response.
+# The new response will replace the existing response.
+# """
+# # As a first cut, lets just clone the response and
+# # put all of the logic in our refined response class below.
+# r=Response()
+# r.__dict__.update(anHTTPResponse.__dict__)
+# return r
+
+
+
+
+# Possible implementation helpers:
+
+class Response:
+"""Customized Response that handles SOAP-specific details.
+
+We override setBody to marhsall Python objects into SOAP. We
+also override exception to convert errors to SOAP faults.
+
+If these methods stop getting called, make sure that ZPublisher is
+using the soap.Response object created above and not the original
+HTTPResponse object from which it was cloned.
+
+It's probably possible to improve the 'exception' 

[Zope-dev] No feedback for SOAP patch ?

2000-06-23 Thread Petru Paler

  Hi,

   I received zero feedback on the SOAP support patch I sent a few days ago...
I no one is interested I guess I should just forget about it and find something
else more interesting ?

-Petru

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Re: [Zope-dev] No feedback for SOAP patch ?

2000-06-23 Thread Petru Paler

On Fri, Jun 23, 2000 at 10:34:50PM -0400, Evan Simpson wrote:
> I've barely had a free second with functioning brain capacity this past
> week, but I'm interested.  More so now that Secret Labs has announced their
> SOAP client library at http://www.pythonware.com/products/soap  If you

   That made me to do it :^) (and it is partly guilty for why it isnt working
as good as it should...).

> haven't already popped your patch into the Collector, please do!

   I just did now

-Petru

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[Zope-dev] RFC: page contracts

2000-08-30 Thread Petru Paler

Hi eveyone.

While playing around with the development version of ACS (ArsDigita Community
System), I noticed a very nice feature they introduced, namely page contracts.

In ACS, this means that every tcl page starts with a call to ad_page_contract.
In the parameters passed, you specify:
   - general page documentation (what it does)
   - author(s)
   - creation date (not needed for Zope since we have bobobase_modification_time)
   - CVS ID (not quite applicable for Zope (yet?))
   - the expected input variables (from forms) along with their default values
   (where applicable) and types (having a couple of types like "integer" and "string"
   predefined and an easy-to-use plugin system to add custom types)
   - an optional validation block in which you can check the input data ranges
   and validity (you can also make validation rules depend on each other so if
   one fails, the rules which depend on it aren't tried)
   - an optional custom error messages section (to use when one of the required
   input variables is not there or does not match the format, or when a validation
   block fails). If you don't provide this some reasonable defaults are provided.

IMHO, such a feature would be very useful for Zope too. I find myself quite 
often doing input validation and error handling in DTML, which is (to say the
least) painful.

I would be interested to give a try at implementing this, but before starting
I wanted to hear community's opinion on:
   - whether this would be useful
   - how this should be aproached (the two possibilities I have in mind until
   now are either a separate manage tab for the page contract, and there a
   HTML-based interface for building it, either a  tag which
   surrounds the page contract (written in python probably) and placed at the
   top of DTML documents/methods).

--
Petru Paler, mailto:[EMAIL PROTECTED]
http://www.ppetru.net - ICQ: 41817235

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Re: [Zope-dev] 2gb file size

2000-11-04 Thread Petru Paler

On Fri, Nov 03, 2000 at 01:04:52PM -0800, Andy McKay wrote:
> My database has suddenly ballooned to 2 gig's stopping my Zope from running.
> Are there any utils to delete the last transaction or so?

Try truncating Data.fs to a bit under 2 gigs, then start Zope. It will 
probably complain about a truncated transaction at a certain offset, write
that down and truncate Data.fs again at exactly that offset and you should
be ok.

--
Petru Paler, mailto:[EMAIL PROTECTED]
http://www.ppetru.net - ICQ: 41817235

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