Hello, I am working in R Studio 0.99.903 and want to calculate the assortativity for two variables. 1. Do individuals cluster if they are of the same sex? Male (m) or Female (f) 2. Do individuals cluster if they have the same reproductive status? Reproductive active (y), non-active (n), NA <- so here I have quite some NA values
the association data is in file "network_2013" the info on sex and reproductive status of the individuals is in file my_supp_2013 #conversion of network data into igraph graph net_graph_2013 <- graph.adjacency(network_2013,mode="undirected",weighted=TRUE,diag=FALSE) # Sex assortativity_nominal(net_graph_2013, my_supp_2013$Sex, directed=F) # Repr Status assortativity_nominal(net_graph_2013, my_supp_2013$Repro, directed=F) I do not know why it works for the Sex but not for Reproductive Status. I assume it has to do with the NA values? Please help. Veronika
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"X89BC",0.0588235294117647,0.0625,0.08,0.0864197530864197,0.037037037037037,0.0540540540540541,0.0344827586206897,0.0842105263157895,0.0444444444444444,0.0634920634920635,0.0731707317073171,0.0375,0.0232558139534884,0.0526315789473684,0.0632911392405063,0.0444444444444444,0.0645161290322581,0.0769230769230769,0.109090909090909,0.0289855072463768,0.109375,0.0576923076923077,0.0641025641025641,0.0704225352112676,0.2,0.0804597701149425,0.0555555555555556,0.0526315789473684,0.1,0.0925925925925926,0.078125,0.0317460317460317,0.0549450549450549,0.0740740740740741,0.05,0.0327868852459016,0.19047619047619,0.0535714285714286,0.0810810810810811,0.0454545454545455,0.294117647058824,0.0634920634920635,0,0.0666666666666667,0.0824742268041237,0.0384615384615385,0.0517241379310345,0.0625,0.0617283950617284 "X8ACD",0.103448275862069,0.284210526315789,0.304347826086957,0.43010752688172,0.173333333333333,0.197916666666667,0.115384615384615,0.277227722772277,0.295918367346939,0.411764705882353,0.318681318681319,0.198019801980198,0.107142857142857,0.224489795918367,0.290322580645161,0.285714285714286,0.123595505617978,0.411764705882353,0.113636363636364,0.139784946236559,0.197802197802198,0.305555555555556,0.164948453608247,0.230769230769231,0.133333333333333,0.322916666666667,0.282828282828283,0.216494845360825,0.275,0.240963855421687,0.419753086419753,0.232558139534884,0.224489795918367,0.329787234042553,0.48314606741573,0.181818181818182,0.116883116883117,0.0786516853932584,0.528735632183908,0.0641025641025641,0.12,0.481927710843373,0.0666666666666667,0,0.32,0.072289156626506,0.123595505617978,0.530120481927711,0.629213483146067 "X9027",0.19,0.411764705882353,0.42,0.380952380952381,0.0824742268041237,0.396039603960396,0.0618556701030928,0.518867924528302,0.485714285714286,0.257425742574257,0.41747572815534,0.4,0.151515151515152,0.339622641509434,0.470588235294118,0.456310679611651,0.252427184466019,0.336633663366337,0.282828282828283,0.343137254901961,0.306930693069307,0.579439252336449,0.358490566037736,0.363636363636364,0.103092783505155,0.461538461538462,0.504761904761905,0.30188679245283,0.191919191919192,0.323232323232323,0.24,0.306930693069307,0.524271844660194,0.365384615384615,0.274509803921569,0.275510204081633,0.102040816326531,0.198019801980198,0.343137254901961,0.0721649484536082,0.0824742268041237,0.254901960784314,0.0824742268041237,0.32,0,0.103092783505155,0.237623762376238,0.28,0.343137254901961 "X97F6",0.262295081967213,0.129411764705882,0.111111111111111,0.0978260869565217,0.0181818181818182,0.15,0.150943396226415,0.122448979591837,0.180851063829787,0.025974025974026,0.149425287356322,0.127906976744186,0.224489795918367,0.109756097560976,0.108433734939759,0.202127659574468,0.185714285714286,0.1,0.194029850746269,0.16,0.186666666666667,0.142857142857143,0.209302325581395,0.253333333333333,0.0172413793103448,0.127659574468085,0.118279569892473,0.172413793103448,0.104477611940299,0.130434782608696,0.0512820512820513,0.123287671232877,0.161290322580645,0.133333333333333,0.109756097560976,0.32258064516129,0,0.412698412698413,0.0632911392405063,0,0.0181818181818182,0,0.0384615384615385,0.072289156626506,0.103092783505155,0,0.295081967213115,0.0675675675675676,0.0555555555555556 "X9CDF",0.32258064516129,0.188235294117647,0.25609756097561,0.168421052631579,0.0491803278688525,0.324675324675325,0.087719298245614,0.275510204081633,0.25531914893617,0.135802469135802,0.269662921348315,0.218390804597701,0.321428571428571,0.253012048192771,0.261904761904762,0.191489361702128,0.301369863013699,0.129411764705882,0.375,0.285714285714286,0.256410256410256,0.228571428571429,0.264367816091954,0.243589743589744,0.032258064516129,0.193548387096774,0.263157894736842,0.186046511627907,0.125,0.2,0.109756097560976,0.205479452054795,0.252631578947368,0.21978021978022,0.117647058823529,0.303030303030303,0.0483870967741935,0.387096774193548,0.119047619047619,0.0166666666666667,0.0163934426229508,0.107142857142857,0.0517241379310345,0.123595505617978,0.237623762376238,0.295081967213115,0,0.113924050632911,0.142857142857143 "XB2B6",0.103896103896104,0.303370786516854,0.227272727272727,0.380434782608696,0.2,0.193181818181818,0.121212121212121,0.23469387755102,0.268041237113402,0.301204819277108,0.292134831460674,0.180851063829787,0.114285714285714,0.211111111111111,0.206896551724138,0.221052631578947,0.0465116279069767,0.419753086419753,0.0975609756097561,0.116279069767442,0.166666666666667,0.259615384615385,0.117021276595745,0.179775280898876,0.119402985074627,0.301075268817204,0.202020202020202,0.136842105263158,0.253333333333333,0.184210526315789,0.394736842105263,0.148148148148148,0.195876288659794,0.197802197802198,0.375,0.164556962025316,0.121212121212121,0.0909090909090909,0.433734939759036,0.0909090909090909,0.0757575757575758,0.41025641025641,0.0625,0.530120481927711,0.28,0.0675675675675676,0.113924050632911,0,0.517241379310345 "XBF50",0.0851063829787234,0.287128712871287,0.302083333333333,0.422680412371134,0.185185185185185,0.2,0.0952380952380952,0.317307692307692,0.288461538461538,0.4,0.285714285714286,0.274509803921569,0.0777777777777778,0.225490196078431,0.227722772277228,0.29126213592233,0.111111111111111,0.387096774193548,0.126315789473684,0.141414141414141,0.168421052631579,0.311926605504587,0.168316831683168,0.206185567010309,0.148148148148148,0.300970873786408,0.228571428571429,0.196078431372549,0.275862068965517,0.150537634408602,0.423529411764706,0.159574468085106,0.233009708737864,0.353535353535354,0.412371134020619,0.123711340206186,0.132530120481928,0.0729166666666667,0.43956043956044,0.0963855421686747,0.123456790123457,0.505747126436782,0.0617283950617284,0.629213483146067,0.343137254901961,0.0555555555555556,0.142857142857143,0.517241379310345,0
ID;Sex;Repro X0566;f;y X0696;f;y X08AD;f;NA X0942;f;n X0A19;m;n X0EDF;f;y X17B5;f;y X199B;f;y X1C19;f;y X1F19;f;NA X1F85;f;NA X2253;f;y X2389;f;y X260B;f;NA X2877;f;NA X287B;f;y X297D;f;y X2C47;f;NA X2D08;f;y X2D53;f;NA X2DB2;f;y X2E96;f;y X30DA;f;y X32AD;f;y X32BC;m;n X3437;f;y X3449;f;y X35A6;f;y X3931;m;n X3946;f;NA X3B21;f;NA X3BE1;f;y X3D2A;f;y X3D93;f;y X4E85;f;NA X58D2;f;y X593D;m;n X6886;f;y X73AA;f;NA X7807;m;n X7899;m;n X879B;f;NA X89BC;f;NA X8ACD;f;NA X9027;f;y X97F6;f;NA X9CDF;f;y XB2B6;f;NA XBF50;f;NA
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