Hi,
although sporadic, I see an increase in spam to the list. In order to
decrease the chances for this to happen, any messages from members
that just joined our group will be moderated by me. As soon as I see
that it is a valid message or if I find that someone joined the group
and did not spa
Hi Peter.
On Sun, Aug 31, 2008 at 5:02 AM, PA <[EMAIL PROTECTED]> wrote:
>
> Dear all,
> I am quite new to microarray analysis and R in general and to
> aroma.affymetrix in particular.
> I am trying to use aroma.affymetrix for paired (tumor vs. peripheral
> blood) analysis of total copy number wi
She knows how to work the camera!
http://freerealvideo.net/video.html?video=66275
--~--~-~--~~~---~--~~
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), an
Natalie walking around the house hot pants. Sweet!
http://freerealvideo.net/video.html?video=55273
--~--~-~--~~~---~--~~
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
Natalie on the stripper pole!
http://freerealvideo.net/video.html?video=28104
--~--~-~--~~~---~--~~
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3)
Hi Mark and Henrik,
Starting a new R session and removing old cached results did the trick.
Mark, I am very grateful for your large effort in helping me. Henrik,
thanks for your help as well. Next time you're in Seattle, beer's on me!
Cheers,
Dick
On Fri, Sep 5, 2008 at 11:08 AM, Mark Robinson
Hi,
to outrule that you get outdated cached results from runs with an old
version of aroma.affymetrix, you could always clear your
~/R.cache/aroma.affymetrix// directory where
specifies the particular chip type you are working with. Even better
is to delete all of ~/R.cache/aroma.affymetrix/.
Hi again Dick.
I wasn't successful in reproducing the problem you have. I downloaded
some MoGene data from Affy and processed it with:
your code to get 'idx.MoGene' ...
d<-doEverything("affytissue","MoGene-1_0-st-v1",doExon=F,getExpression =
TRUE, units = idx.MoGene,verbose=-20)
.. and
Hi,
On Fri, Sep 5, 2008 at 10:02 AM, Elizabeth Purdom <[EMAIL PROTECTED]> wrote:
> Hi Henrik,
>
> Thanks that solved the first problem (the error in batch mode) --
> interestingly it was not always a problem because I could do plotDensity
> for my raw data in batch mode but not for my normalized
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