[aroma.affymetrix] Re: How do you analyze Gene ST Data?

2008-11-24 Thread ManasaR
Hi, Just to say that i've been working with some GeneST1.0 data following the tips above and it has been a breeze thanks to you guys. I noticed something and thought i should mention it - though it might be trivial and most users might have already discovered it. Just in case there are people lik

[aroma.affymetrix] Re: Batch normalization

2008-11-24 Thread Henrik Bengtsson
Depends on normalization method? Which one are you using? /Henrik On Mon, Nov 24, 2008 at 7:04 PM, joshy <[EMAIL PROTECTED]> wrote: > > Hi > I would like to know the following. > > If I add a new set of CEL files to the batch of CEL files I have > already normalized, do I need to renormalize al

[aroma.affymetrix] Batch normalization

2008-11-24 Thread joshy
Hi I would like to know the following. If I add a new set of CEL files to the batch of CEL files I have already normalized, do I need to renormalize all of them together once agian (as a single batch) Thanks in advance Joshy --~--~-~--~~~---~--~~ When reporting pr

[aroma.affymetrix] Re: How do you analyze Gene ST Data?

2008-11-24 Thread Henrik Bengtsson
Hi, one typo by me, please retry with: path2 <- filePath(path, "chipTypes", "MoGene-1_0-st-v1"); [I forgot 'chipTypes'] /Henrik On Mon, Nov 24, 2008 at 11:56 AM, pwhiteusa <[EMAIL PROTECTED]> wrote: > > The answers are dispersed below > >> > I just wanted to update you on the issue o

[aroma.affymetrix] Re: How do you analyze Gene ST Data?

2008-11-24 Thread pwhiteusa
The answers are dispersed below > > I just wanted to update you on the issue of creating Windows shortcuts > > to point to the correct directory. > > > So the CDF files I want to use is on a mapped network drive - it is > > mapped to my "P Drive": > > > P:\ANNOTATION\aromaAffymetrix\annot