Re: Universal binaries of matrixStats v0.1.3 for OSX, please (Was: Re: [aroma.affymetrix] Installation errors under R 2.8 / Mac OS X)

2008-12-15 Thread Lynn Amon
These packages won't install because there is no DESCRIPTION file. Thanks, Lynn Mark Robinson wrote: Attached. Cheers, Mark On 15/12/2008, at 9:48 AM, Henrik Bengtsson wrote: Hi, thanks for reporting

[aroma.affymetrix] Re: Batch Effects

2008-12-15 Thread Mark Robinson
Hi Sarah. There is currently nothing readily available for batch effect adjustment in aroma.affymetrix (that I know of). But, there are ways of doing it that wouldn't be too difficult to do as a once-off. What did you have in mind? ... however, even with a batch adjustment, it may still

[aroma.affymetrix] GLAD configuration

2008-12-15 Thread sc@rcega
Hi Henrik! I just analyzed 27 tumor for the 100k chip and I read the Glad paper. I wonder the following: Is it necessary to configure the GLAD model for the 100k Affymetrix chip? Thx! David --~--~-~--~~~---~--~~ When reporting problems on aroma.affymetrix,