Hi Mark,
Thank you so much for your reply. I am new to array analysis so I am
open to any suggestions. My original thought was to do normalize
using rank. I am not sure if it matters, but my end goal is to be
able to do FIRMA analysis between my groups
I realize that the data probably will
Hi,
I am trying to process SNP6.0 CEL files to get CN data. I am getting
the following error. Could anybody help me to figure it out?
plm - AvgCnPlm(csC, mergeStrands=TRUE, combineAlleles=TRUE, shift=
+300)
fit(plm, verbose=verbose)
Error in UseMethod(getCdf) : no applicable method for getCdf
Hi Anguraj.
You'll need to give more information for us to be able to help you.
First of all, give us the output of 'sessionInfo()' (are you using the
latest version?) and perhaps what you can do is try and repeat your
sequence of commands from a *new* R session, call
,
algorithmParamet
ers:List of 3, ..$ alpha: num [1:8] 0.1 0.075 0.05 0.03 0.01 0.0025
0.001 0.0001
, ..$ q: num 2, ..$ Q: num 98)
Output path: probeData/sanger1,CEU,cgpSet,ACC,ra,-XY/GenomeWideSNP_6
Is done: FALSE
RAM: 0.01MB
csC - process(acc, verbose=verbose)
20081216 10:14:13|Calibrating data set
