[aroma.affymetrix] Re: Compare the splicing pattern of two samples

2009-05-06 Thread Mark Robinson
> Hi Mark: > > After I have obtained the statistically significant differentially > expression(DE) exons between the two groups using limma, I want further to > explore the splicing pattern of the DE exons in each group. As I know, for > each array, FIRMA scores each exon as to whether its probes

[aroma.affymetrix] Re: Error Occured When Convertting CDF File

2009-05-06 Thread Xinjun Zhang
Hi Elizabeth: Thanks for your suggestions. I have fixed the problem and some similar problems of "failed to allocate vector of size XXX". This problem is caused by the insufficient memory size which is assigned to R by OS. The max size to R in windows 32 bit environment is 2470Mb. When it is use

[aroma.affymetrix] Re: Compare the splicing pattern of two samples

2009-05-06 Thread Xinjun Zhang
Hi Mark: After I have obtained the statistically significant differentially expression(DE) exons between the two groups using limma, I want further to explore the splicing pattern of the DE exons in each group. As I know, for each array, FIRMA scores each exon as to whether its probes systematical