Hi Diya.
Just to add my 2 cents to this, although Mathieu has pretty much
covered it.
There are no online tutorials (that I know of) for exactly what you
want to do, but your proposed analysis is very standard. lmFit() of
limma can work directly on your matrix of logged data. Consult the
Hi Joanna.
I've copied the aroma.affymetrix mailing list in case others have this
question.
Yes, there are a few undocumented arguments that you will need for
mouse (the example script was based on human). So, in R if you type:
source("http://129.94.136.7/file_dump/mark/bpmapCluster2Cdf.R"
