Hi,
After I got the firma scores, how can i analyze it. I see boxplot of
firma scores in the paper. So how i can get the same result.
I want to check the alternative splicing between our several samples.
Now I have got the score of each one but How to compare them.
Thanks very much.
Jiang
--
Wh
Hi Mark,
I want to ask how to construct custom CDF and how to replace it in CEL
files.
Thanks,
Best,
Jiang
On Nov 16, 7:18 pm, Mark Robinson wrote:
> Hi Tim.
>
> The FIRMAGene code is not designed to play nice with NAs in the probe
> level data. I'm somewhat hesitant to include this because it
Thanks very much. But what does the FIRMA score mean if it didn't
compare the different samples.
Best,
Jiang
On Nov 17, 5:54 pm, Mark Robinson wrote:
> Hi Jiang.
>
> Its helpful to use meaningful subject headers, so that others can
> search the mailing lists. So, I've changed your messages to
Dear Herink,
I have 2 technical questions (I saw something similar regarding older
versions).
I generated a cesN set, extracted some arrays that I want to average:
###
cesA <- extract(cesN, c(1:2))
cesEX <- extract(cesN, c(7:9))
sc364 <- calculateBaseline(cesEX, chromosomes=1:23,
ploidy=2,defa