Re: [aroma.affymetrix] Re: custom CDF

2009-12-11 Thread Mark Robinson
Hi Zaid. There is an example flat file (well, 10 lines of it) at that page that Pierre suggested. You'll want to filter the missing lines and make sure all the data in a column is of the same type. Cheers, Mark No. My flat file has some lines with missing values and non integer values. Is

[aroma.affymetrix] Re: Output of aroma affymetrix analysis

2009-12-11 Thread zaid
yea but does that save the file in the current directory? After that step, I don't see any output files. Am i missing a step? On Dec 11, 1:48 pm, Mark Robinson mrobin...@wehi.edu.au wrote: Hi Zaid. Reading on at that page, it says: - To extract the estimates (transcript or

[aroma.affymetrix] Re: Output of aroma affymetrix analysis

2009-12-11 Thread zaid
Nevermind!! Thanks again On Dec 11, 2:03 pm, zaid z...@genomedx.com wrote: yea but does that save the file in the current directory? After that step, I don't see any output files. Am i missing a step? On Dec 11, 1:48 pm, Mark Robinson mrobin...@wehi.edu.au wrote: Hi Zaid. Reading on