Hi People,
I am extracting unit names from specific chromosome over specific
region (x,y) e.g.:
gi <- getGenomeInformation(cdf)
units <- getUnitsOnChromosome(gi, chromosome=2, region=c(x,y))
unit_names <- getUnitNames(cdf, unit=units)
“unit_names” will contain something like SNP_A-2243961 and CN
2010/1/27 Mikhail :
> Henrik, thank you for such a thorough answer. Now I understand how to
> create two datasets, and it did work. I'm trying to use these datasets
> for FIRMAGene analysis, as described in
> http://bioinf.wehi.edu.au/folders/firmagene/sup3.R
> file. Nowhere in this file I can see
Henrik, thank you for such a thorough answer. Now I understand how to
create two datasets, and it did work. I'm trying to use these datasets
for FIRMAGene analysis, as described in
http://bioinf.wehi.edu.au/folders/firmagene/sup3.R
file. Nowhere in this file I can see how and where the two dataset
Hi, all
A quick question about using lmFit on firma scores from exon array
analysis. According to the vignettes, to detect splicing events, we
need to use lmFit to find the significant event as following (my code
so far):
fit <- lmFit(exFirma[,3:ncol(exFirma)] ,design)
fit2<-contrasts.fit(fit,con
