Hi Peter.
I haven't looked at this since early 2009 and our motive in making this
available as a script (instead of within the aroma.affymetrix package) was
simply as an FYI and the code is readily available for others to modify
for their needs. You will of course understand that underlying packa
I attempted to use the script posted on the site to convert the
pd.hugene.1.0.st.v1 package to a CDF file but it appears not to be
working. The resulting cdf file has too many units and
aroma.affymetrix will not work with it beyond naming the CDF. Are you
aware of any issues?
source("http://bioi
Hi Daniela.
You haven't told us what inputs you've used for 'plm' and 'cls' ...
and what is stored in 'u'?
Have you read the docs at:
?FIRMAGene
Cheers,
Mark
On 14-Mar-10, at 10:21 AM, dkny169 wrote:
Hello,
I have a question regarding FIRMAGene. Executing the FIRMAGene
command I get the
Hi Daniela.
Those files are available from Affymetrix.
For example, see:
http://www.affymetrix.com/estore/browse/products.jsp?productId=131453&categoryId=35676#1_3
HuGene-1_0-st-v1 Transcript Cluster Annotations, CSV, Release 30 (18
MB 11/09/09)
HuGene-1_0-st-v1 Probe Sequences, tabular form
Hi Vince.
Yes, getUniqueCdf() *should* inflate the dimensions of the original
CDF. Basically, it is rearranging the probesets so that individual
probes do not match to multiple probesets. To do this, it creates a
CDF with a higher dimension, copying the original physical location to
mul
