Re: [aroma.affymetrix] Firma Scores in the range of 700-1500

2010-07-22 Thread Mark Robinson
Hi Gaurav. Note that the FIRMA scores (and expression values, chip effects, etc.) are stored in the exponentiated (base 2) scale. So, take log2() of them: > log2(1568) [1] 10.6 That's much more feasible. Cheers, Mark On 2010-07-22, at 12:10 AM, gaurav bhatti wrote: > I wanted to reproduce

[aroma.affymetrix] Re: Problem with GLAD on linux cluster

2010-07-22 Thread cstratowa
Dear Henrik, Thank you very much for changing the code for getAverageFile(), I will try it and let you know. Thank you also for the explanation of writing to a temporary file, now I understand your intention. Regarding race conditions: No, I do not assume that aroma.* takes care of potential rac