...and by the way, what is your sessionInfo(), i.e. what does the
following report?
> library("aroma.affymetrix");
> sessionInfo();
/Henrik
On Thu, Apr 5, 2012 at 1:55 PM, Henrik Bengtsson
wrote:
> Hi,
>
> first of all, there is a very simple reason for this, we just have to
> find out why. My
Hi,
first of all, there is a very simple reason for this, we just have to
find out why. My best guess now is that one of the files are
incomplete. Start a fresh R session and verify that you get the
exactly same *file sizes* as below:
> library("aroma.affymetrix");
> cdf <- AffymetrixCdfFile$by
Hi,
Here is the path
>path <- getPath(cdf)
> list.files(path)
[1] "GenomeWideSNP_6,Full,HB20080710.acs"
"GenomeWideSNP_6,Full,na31,hg19,HB20110328.ufl"
[3] "GenomeWideSNP_6,Full,na31,hg19,HB20110328.ugp"
"GenomeWideSNP_6,Full.cdf"
Frederic
Le mercredi 4 avril 2012 16:57:18 UTC+2, Fr
Hi,
On Thu, Apr 5, 2012 at 10:17 AM, Frederic Foucault
wrote:
> Hello,
>
> I follow the setup of the vignette but failed again
>
> setwd("c:/Users/foucault/Bioinformatic/acne/Test/")
>> library("aroma.affymetrix");
>> library("ACNE");
>> verbose <- Arguments$getVerbose(-10, timestamp=TRUE);
>>
Hello,
I follow the setup of the vignette but failed again
setwd("c:/Users/foucault/Bioinformatic/acne/Test/")
> library("aroma.affymetrix");
> library("ACNE");
> verbose <- Arguments$getVerbose(-10, timestamp=TRUE);
>
> dataSet <- "GSE14996,testSet";
> chipType <- "GenomeWideSNP_6";
> cdf <- A
