[aroma.affymetrix] object 'cns' not found

2012-04-16 Thread Andyusa
HI All, It was my first time to use the aroma to run two pairs of samples vs controls, but it turn out failure (detail below). Could anyone give me some advices? Thanks. Andy library("aroma.affymetrix"); verbose <- Arguments$getVerbose(-8, timestamp=TRUE); # Don't display too many decimals. opt

[aroma.affymetrix] Failed to split tumor and normal samples

2012-04-16 Thread Andyusa
Hi I posted that before, but it did not show up and I re-posted it here. Sorry if double posted but please advise how to correct the problem shown below. Thanks. Andy library("aroma.affymetrix"); verbose <- Arguments$getVerbose(-8, timestamp=TRUE); # Don't display too many decimals. options(di

Re: [aroma.affymetrix] object 'cns' not found

2012-04-16 Thread Pierre Neuvial
Hi Andy, On Mon, Apr 16, 2012 at 4:15 AM, Andyusa wrote: > HI All, > > It was my first time to use the aroma to run two pairs of samples vs > controls, but it turn out failure (detail below). Could anyone give me some > advices? Thanks. Andy > > library("aroma.affymetrix"); > verbose <- Arguments

Re: [aroma.affymetrix] object 'cns' not found

2012-04-16 Thread Henrik Bengtsson
Hi, some minor corrections/clarifications below. On Mon, Apr 16, 2012 at 1:32 AM, Pierre Neuvial wrote: > Hi Andy, > > On Mon, Apr 16, 2012 at 4:15 AM, Andyusa wrote: >> HI All, >> >> It was my first time to use the aroma to run two pairs of samples vs >> controls, but it turn out failure (deta