Dear Henrik,
I have one question about CBS output.
Can I transform the CBS result to a standard form like:
"unitName" "chromosome" "position" patient1 patient2 patient3
So that I that plot the CBS result in the same way like before.
I know CBS has one tabulate excel output, but it lists the s
Hi Pierre,
Thanks!
I find that if I use R commands to save the plot, such as this,
toPNG(pairName, tags=c(chrTag, "PairedPSCBS"), width=840, aspectRatio=0.6, {
plotTracks(fit);
});
The saved plot has poor quality, with the text all blurry.
Instead, if I plot on the screen and save the image m
Dear Henrik
I am a consultant working with Laurent Malvert.
Many thanks for helping us with the aroma.affymetrix issue we have
been experiencing. Gladly this looks like being complete.
Whilst installing your recent release of aroma.affymetrix v2.5.0, I
encountered some dependencies and would like
Hi Ying,
This is a question for the Bioconductor mailing list, because it had
to do with the affxparser package (and nothing to do with the aroma
framework). Can you post it there ?
Cheers,
Pierre
On Mon, May 7, 2012 at 10:07 PM, sean nj wrote:
> Hi guys,
>
> I tried to convert recent customCD
Hi Michelle,
Yes: just replace
plotTracks(fit);
by
plotTracks(fit, chromosome=2);
Best,
Pierre
On Mon, May 7, 2012 at 11:48 PM, Michelle wrote:
> Hi Henrik,
>
> On this page http://aroma-project.org/vignettes/PairedPSCBS-lowlevel you
> showed how to make whole genome plots of TCN, the
> de
