On Tue, Jun 19, 2012 at 2:29 PM, Michelle wrote:
> Hi Henrik,
>
> I noticed that the tcnMeans from PSCBS are centered around 2, while the
> rawCNs extracted using the CBS model are centered around 1.
> What is the difference between tcnMean and rawCN, and, is there a column in
> PSCBS output that
Hi Henrik,
I noticed that the tcnMeans from PSCBS are centered around 2, while the
rawCNs extracted using the CBS model are centered around 1.
What is the difference between tcnMean and rawCN, and, is there a column in
PSCBS output that is equivalent to rawCN?
Thanks,
Michelle
On Fri, Feb 17,
You can ignore them. Warnings are almost always alright - errors are not.
/Henrik
On Tue, Jun 19, 2012 at 6:40 AM, NT_CMU wrote:
> Thank you Henrik and Pierre. I am able to run it successfully now.
>
> It gives me a few warnings at the end.
>
>> warnings()
> Warning messages:
> 1: In log2(y) :
Thanks. This helped me resolve the issue.
Nitesh
On Monday, 18 June 2012 17:19:27 UTC-4, Henrik Bengtsson wrote:
>
> On Mon, Jun 18, 2012 at 1:59 PM, NT_CMU wrote:
> > Hi
> >
> > Thanks for the help Pierre. I managed to resolve it. I am just using the
> > AffymetrixCelSet$byName with the cdf
Thank you Henrik and Pierre. I am able to run it successfully now.
It gives me a few warnings at the end.
> warnings()
Warning messages:
1: In log2(y) : NaNs produced
2: In log2(y) : NaNs produced
3: In log2(y) : NaNs produced
4: In log2(y) : NaNs produced
5: In log2(y) : NaNs produced
6: In log
