Before anything else, can you verify that your CDF is correct?
Confirm that you get the following:
> library("aroma.affymetrix");
> cdf <- AffymetrixCdfFile$byChipType("GenomeWideSNP_6", tags="Full");
> cdf
AffymetrixCdfFile:
Path: annotationData/chipTypes/GenomeWideSNP_6
Filename: GenomeWideSNP_6
Hi.
On Wed, Jul 11, 2012 at 9:59 AM, Nir wrote:
> HI All,
>
>
> I am trying to run the standard procedures for a HuGene-1_0-st-v1 array.
>
> Here is the code:
>
> ---
>
> setwd("");
>
> library(aroma.affymetrix)
>
> chipType <- "HuGene-1_0-st-v1
HI All,
I am trying to run the standard procedures for a HuGene-1_0-st-v1 array.
Here is the code:
---
setwd("");
library(aroma.affymetrix)
chipType <- "HuGene-1_0-st-v1"
cdf <- AffymetrixCdfFile$byChipType(chipType, tags="r3")
print(c
