I have been trying to perform copy number analysis of SNP6.0 data. I am unable to get past the "process" function, where R appears to hang (will not respond to interrupt) after displaying the following line during the verbose output from the process function call:
20120821 13:37:24| Reading types for *all* units... I thought this may just be taking a long time because of the size of the dataset, but I reduced the dataset to just one .cel file and the problem persists, even after letting it run for 14 hours or so. I am using aroma 2.5.0. I am running this on R Studio Server on a Bioconductor Amazon Machine Image. function call: csC <- process(acc, verbose=verbose) All of the prior steps from the CRMAv2 vignette work smoothly. Any advice would be appreciated. jk -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
