Good to hear.
I'll fix/workaround this peculiar problem so this won't the future.
It might be a while before you see the fix, but it's added to my todo
list [https://github.com/HenrikBengtsson/R.oo/issues/5].
/Henrik
On Mon, Jan 26, 2015 at 9:00 AM, Jerry Liu wrote:
> It worked! I did load the
It worked! I did load the annotation package and hgu133a for other
analysis. Couldt be some name space collision. Restarting seems to work.
Now it had passed that error and running...
Thanks again very much!
Jerry
On Monday, January 26, 2015 at 11:32:25 AM UTC-5, Henrik Bengtsson wrote:
>
> On
On Mon, Jan 26, 2015 at 7:56 AM, Jerry Liu wrote:
> Hi Henrik ,
>
> Thanks very much for your such quick reply! It could be a Bioconductor
> error. I'd appreciate it greatly if you could give me some suggestions on
> how to fix this.
I think I understand the problem(*). The immediate
solution/wo
Hi Henrik ,
Thanks very much for your such quick reply! It could be a Bioconductor
error. I'd appreciate it greatly if you could give me some suggestions on
how to fix this.
Here's the trace back:
19: stop(paste(msg, collapse = ""), call. = FALSE, domain = NA)
18: .Defunct(msg = msg)
17: (func
On Mon, Jan 26, 2015 at 7:31 AM, Jerry Liu wrote:
>
> Hello,
>
> I got an error after trying to fit the CBS model:
>
> Error: hgu133aPFAM is defunct. Please use select() if you
> need access to PFAM or PROSITE accessions.
>
> Here are the command I ran:
>
> ds<-doCRMAv2("GSE57277_DLBCL", chipTyp
Hello,
I got an error after trying to fit the CBS model:
Error: hgu133aPFAM is defunct. Please use select() if you
need access to PFAM or PROSITE accessions.
Here are the command I ran:
ds<-doCRMAv2("GSE57277_DLBCL", chipType="Mapping250K_Sty", plm="RmaCnPlm")
sm<-CbsModel(ds)
fit(sm, verbose
