arning=function() {
> > message('Try/catch: warning')
> > traceback()
> > },
> > finally={
> > message('Try/catch: finally')
> > traceback()
> > }
> > )
> > print(cbs)
> >
> > I start
> print(cbs)
>
> I started the script with all the samples (without "arrays=1019:1020") as
> before.
>
> What surprised me is that the script continued to the writeRegions call and
> it started to export all the samples.
>
> pathname <- writeRegions(cbs, verbose=v
teRegions call and
it started to export all the samples.
pathname <- writeRegions(cbs, verbose=verbose)
> # Export CBS regions
> > pathname <- writeRegions(cbs, verbose=verbose)
> 20170831 21:53:10|Array #1 ('201T') of 1019...
> 20170831 21:53:10| Extracting region
- CbsModel(cesN, cesN1.ref)
> fit(cbs, verbose=verbose)
> print(cbs)
>
> # Export CBS regions
> pathname <- writeRegions(cbs, verbose=verbose)
>
>
>> 20170831 06:57:51| Pathname:
>> cbsData/gdsc_all,ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY,paired/GenomeWideSNP_6/YKG-1,chr25
al samples
cbs <- CbsModel(cesN, cesN1.ref)
fit(cbs, verbose=verbose)
print(cbs)
# Export CBS regions
pathname <- writeRegions(cbs, verbose=verbose)
20170831 06:57:51| Pathname:
> cbsData/gdsc_all,ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY,paired/GenomeWideSNP_6/YKG-1,chr25,6c653767ed90d29ad
