Hello,
I sent an e-mail earlier regarding errors in running the total copy
number vignette, but please disregard that as it turns out it was just
an issue with the annotation files. Sorry for the inconveniences.
However, I've encountered another problem that I'm hoping someone
could help me with.
After running the normalization of the chip effects using:
cesNList[[chipType]] <- process(fln, verbose=verbose)
I encountered the error of:
Error in list(`process(fln, verbose = verbose)` = <environment>,
`process.FragmentLengthNormalization(fln, verbose = verbose)` =
<environment>, :
[2010-06-07 09:34:07] Exception: Cannot fit target function to enzyme,
because there are no (finite) data points that are unique to this
enzyme: 1
sessionInfo()
R version 2.11.1 (2010-05-31)
powerpc-apple-darwin9.8.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] aroma.affymetrix_1.6.0 aroma.apd_0.1.7 affxparser_1.20.0
R.huge_0.2.0 aroma.core_1.6.0
[6] aroma.light_1.16.0 matrixStats_0.2.1 R.rsp_0.3.6
R.cache_0.3.0 R.filesets_0.8.1
[11] digest_0.4.2 R.utils_1.4.0 R.oo_1.7.2
R.methodsS3_1.2.0
traceback()
8: throw.Exception(Exception(...))
7: throw(Exception(...))
6: throw.default("Cannot fit target function to enzyme, because there
are no (finite) data points that are unique to this enzyme: ",
ee)
5: throw("Cannot fit target function to enzyme, because there are no
(finite) data points that are unique to this enzyme: ",
ee)
4: getTargetFunctions.FragmentLengthNormalization(this, verbose = less(verbose))
3: getTargetFunctions(this, verbose = less(verbose))
2: process.FragmentLengthNormalization(fln, verbose = verbose)
1: process(fln, verbose = verbose)
Thanks in advance,
Jack
--
Jack Y. Yu
Washington University in St.Louis
(505) 920-0701
--
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