Re: [aroma.affymetrix] fit CBS model error

2015-01-26 Thread Jerry Liu
gt; On Mon, Jan 26, 2015 at 7:56 AM, Jerry Liu > wrote: > > Hi Henrik , > > > > Thanks very much for your such quick reply! It could be a Bioconductor > > error. I'd appreciate it greatly if you could give me some suggestions > on > > how to fix this.

Re: [aroma.affymetrix] fit CBS model error

2015-01-26 Thread Jerry Liu
.affymetrix, make sure 1) to run the > latest version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetr

[aroma.affymetrix] fit CBS model error

2015-01-26 Thread Jerry Liu
Hello, I got an error after trying to fit the CBS model: Error: hgu133aPFAM is defunct. Please use select() if you need access to PFAM or PROSITE accessions. Here are the command I ran: ds<-doCRMAv2("GSE57277_DLBCL", chipType="Mapping250K_Sty", plm="RmaCnPlm") sm<-CbsModel(ds) fit(sm, verbose