for the normal
> samples of each batch could then be used to normalize the other
> samples of that batch.
>
> I hope this will help you.
>
> Best,
>
> Pierre
>
>
>
> On Tue, Jan 5, 2016 at 7:32 AM, Peter Savas > wrote:
> > Dear Group,
> >
Dear Group,
I have 28 samples of tumour normal pairs, run on 2 GenomeWideSNP6.0 arrays
several months apart. Some of the pairs have members on different chips (ie
tumor on one, normal on the other). I am not sure about the best way to
normalise the data such that these split pairs can be used f
