[aroma.affymetrix] Re: error in creating regions.xsl file after gada segmentation

2012-02-09 Thread Roger
want to make it available to as many people as possible but at the same time it will take me a little bit to fix this. Henrik, do you have a suggestion on how I could fix it quickly? and also make it easy to port to newer versions of aroma.affymetrix. Best regards and I apologize again for the inconvenie

[aroma.affymetrix] Re: Vignette: Estimation of total copy numbers using the CRMA v2 method (10K-6.0)

2008-12-12 Thread Roger
Dear Henrik, Good news, I'm really looking forward to try it. I hope I will have some time to try it soon. I like it is single-array based. I would like to have a look on the paper draft if you don't mind to send it to me. Otherwise I will wait until you make it available. Best regar

[aroma.affymetrix] Re: incorporating other copy number algorithms in aroma.affymetrix

2008-09-02 Thread Roger
dealing with Aroma.Affymetrix normalization... I will send the answer directly to you. I will also be very happy to share the beta version of the GADA package and the connection to aroma with you if you are interested. All the best, Roger, On Aug 30, 6:17 am, Alex <[EMAIL PROTECTED]> wrote:

[aroma.affymetrix] Re: incorporating other copy number algorithms in aroma.affymetrix

2008-09-02 Thread Roger
Hi Henrik, On Aug 29, 12:06 pm, "Henrik Bengtsson" <[EMAIL PROTECTED]> wrote: > Hi, > > > > On Wed, Aug 27, 2008 at 9:44 PM, Roger <[EMAIL PROTECTED]> wrote: > > > Hi, > > > It took me some time (and finding a colaborator to help me) to w

[aroma.affymetrix] incorporating other copy number algorithms in aroma.affymetrix

2008-08-27 Thread Roger
M" ... Is this correct? If that is the case I would be interested in knowing how are these SD calculated... I may be able to use them in my algorithm. Finally, one last question is that I get a few probes with the M value NA. I guess it is fine, b