Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files

2012-01-18 Thread Henrik Bengtsson
ehalf Of Henrik Bengtsson >> Sent: January-18-12 9:04 AM >> To: aroma-affymetrix@googlegroups.com >> Subject: Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png >> files >> >> On Wed, Jan 18, 2012 at 1:36 AM, Henrik Bengtsson >> wrote: >>

RE: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files

2012-01-18 Thread Steven McKinney
m > Subject: Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png > files > > On Wed, Jan 18, 2012 at 1:36 AM, Henrik Bengtsson > wrote: > > Hi, > > > > the loading of the Cairo package is misleading here, since it is > > actually not utilizing

Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files

2012-01-18 Thread Henrik Bengtsson
)' for on-line help, or >> 'help.start()' for an HTML browser interface to help. >> Type 'q()' to quit R. >> >>> .help.ESS <- help >>> options(STERM='iESS', editor='emacsclient') >>> require("Cairo&qu

Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files

2012-01-18 Thread Henrik Bengtsson
SS', editor='emacsclient') >> require("Cairo") > Loading required package: Cairo >> CairoPNG("foo.png", width=840, height=640); plot(1:10); dev.off(); > null device >          1 >> > > > > > Steven McKinney > > __

RE: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files

2012-01-17 Thread Steven McKinney
l device 1 > Steven McKinney ________ From: Steven McKinney Sent: January 17, 2012 8:59 PM To: aroma-affymetrix@googlegroups.com Subject: RE: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Hi Henrik, Running the commands

Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files

2012-01-17 Thread Henrik Bengtsson
Since there are several different PNG drivers for R, aroma tries to automatically find one that works. Try the following in a fresh R session: library("aroma.core"); pngDev <- findPngDevice(transparent=FALSE); pngDev("foo.png", width=840, height=640); plot(1:10); dev.off(); Is foo.png empty? Wha

[aroma.affymetrix] ChromosomeExplorer producing zero byte png files

2012-01-17 Thread Steven McKinney
Hi all, I am having no luck running ChromosomeExplorer - I keep getting zero byte PNG files and I'm seeing a warning message but as yet have been unable to figure out which function is issuing the warning. The warning is libpng warning: Application built with libpng-1.2.26 but running with 1