o: aroma-affymetrix@googlegroups.com
>> Subject: Re: [aroma.affymetrix] Combining data from multiple chip types
>>
>> Hi.
>>
>> On Fri, Dec 9, 2011 at 7:02 PM, Steven McKinney wrote:
>> > Dear Henrik
>> >
>> > Thanks to your instructions, I have s
> -Original Message-
> From: aroma-affymetrix@googlegroups.com [mailto:aroma-
> affymet...@googlegroups.com] On Behalf Of Henrik Bengtsson
> Sent: December-12-11 9:30 PM
> To: aroma-affymetrix@googlegroups.com
> Subject: Re: [aroma.affymetrix] Combining data from m
8401618, 8826931, 9000365, ..., 9144105 [8]
> Path (to the first file):
> totalAndFracBData/TumourNormal,ACC,-XY,BPN,-XY,AVG,A+B,FLN,-XY/Mapping250K_Sty
> Total file size: 7.28 MB
> RAM: 0.01MB
>
>
>> cns <- CbsModel(sets$Tum, sets$Nor);
> Loading required package
et(this, 1)
at getFile(this, 1)
at getChipType(getFile(this, 1), ...)
at getChipType.AromaUnitSignalBinarySet(X[[1]], ...)
at FUN(X[[1]], ...)
at lapply(X, FUN, ...)
at sapply.default(res, FUN = getChipType)
at sapply(res, FUN = getChipType)
at getSets.AromaMicroarrayDataSetTuple(this)
at getSets(this
uidance.
>
>
> Steven McKinney
>
>
>> -Original Message-
>> From: aroma-affymetrix@googlegroups.com [mailto:aroma-
>> affymet...@googlegroups.com] On Behalf Of Henrik Bengtsson
>> Sent: December-02-11 12:49 PM
>> To: aroma-affymetrix@googlegroups.c
; affymet...@googlegroups.com] On Behalf Of Henrik Bengtsson
> Sent: December-02-11 12:49 PM
> To: aroma-affymetrix@googlegroups.com
> Subject: Re: [aroma.affymetrix] Combining data from multiple chip types
>
> Hi.
>
> Yes, the Aroma framework can handle this.
>
> On Fri, Dec
Hi.
Yes, the Aroma framework can handle this.
On Fri, Dec 2, 2011 at 12:19 PM, Steven McKinney wrote:
> Hi all,
>
> I am running an analysis on Affymetrix SNP6, 250K Nsp and 250K Sty chip types.
> For various reasons, patient samples were assessed either on SNP6 chips or
> on 500K chipsets (250K
Hi all,
I am running an analysis on Affymetrix SNP6, 250K Nsp and 250K Sty chip types.
For various reasons, patient samples were assessed either on SNP6 chips or
on 500K chipsets (250K Nsp and 250K Sty). To further complicate things,
an occasional 250K Nsp chip processing failed, so some patients
