Re: [aroma.affymetrix] Error while setting up AffymetrixCelSet

2016-08-07 Thread Henrik Bengtsson
Hmm... this looks weird but as usual, there's probably a simple explanation to it. Yes, it could possibly be that the CDF is incompatible with the CEL files, but in that case I'd expect an informative error message explaining why. In a fresh R session, what does the following output? library("ar

[aroma.affymetrix] Error while setting up AffymetrixCelSet

2016-08-01 Thread Marijke VAN MOERBEKE
Dear all I run into an error while setting up a CELset with my data. I've checked the structure of the folder annotationData and rawData and this is as instructed. My working directory contains the folders annotationData and rawData which both have a folder "hjay" (my chiptype) containing the c